List of works - Xiaohui Wu

A classification-based prediction model of messenger RNA polyadenylation sites.

scientific article published on 26 May 2010

APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data.

scientific article published on 18 January 2018

AStrap: identification of alternative splicing from transcript sequences without a reference genome

scientific article published on 01 August 2019

Alternative 3′-untranslated regions regulate high-salt tolerance of<i>Spartina alterniflora</i>

scientific article published in 2023

Alternative polyadenylation is involved in auxin-based plant growth and development.

scientific article published on 20 November 2017

Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms

scientific article

Characterization and prediction of mRNA alternative polyadenylation sites in rice genes

scientific article published in January 2014

Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis

scientific article published on 22 January 2019

Differential alternative polyadenylation contributes to the developmental divergence between two rice subspecies, japonica and indica

scientific article published on 13 February 2019

Distinct genome-wide alternative polyadenylation during the response to silicon availability in the marine diatom Thalassiosira pseudonana

scientific article published on 01 April 2019

Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation

scientific article

Genome-Wide Comparative Analyses of Polyadenylation Signals in Eukaryotes Suggest a Possible Origin of the AAUAAA Signal

scientific article published on 22 February 2019

Genome-wide alternative polyadenylation dynamics in response to biotic and abiotic stresses in rice

scientific article published on 31 July 2019

Genome-wide characterization of intergenic polyadenylation sites redefines gene spaces in Arabidopsis thaliana.

scientific article published on 9 July 2015

Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis.

scientific article published on 6 November 2012

Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice.

scientific article

Genome-wide dynamics of alternative polyadenylation in rice.

scientific article published on 12 October 2016

Genome-wide identification and predictive modeling of polyadenylation sites in eukaryotes

scientific article published on April 2014

Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.

scientific article

In silico prediction of mRNA poly(A) sites in Chlamydomonas reinhardtii.

scientific article

Modeling of Genome-Wide Polyadenylation Signals in Xenopus tropicalis

scientific article published on 03 July 2019

PAcluster: Clustering polyadenylation site data using canonical correlation analysis.

scientific article published on 16 August 2017

PlantAPA: A Portal for Visualization and Analysis of Alternative Polyadenylation in Plants

scientific article

PlantAPAdb: A Comprehensive Database for Alternative Polyadenylation Sites in Plants

scientific article published on 25 November 2019

Predictive modeling of plant messenger RNA polyadenylation sites.

scientific article

Ratio-based analysis of differential mRNA processing and expression of a polyadenylation factor mutant pcfs4 using arabidopsis tiling microarray.

scientific article

Regulatory network-based imputation of dropouts in single-cell RNA sequencing data

scientific article published on 17 February 2022

Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination.

scientific article

TSAPA: identification of tissue-specific alternative polyadenylation sites in plants.

scientific article published on 27 January 2018

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.

scientific article

scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data

scientific article published on 08 May 2019

List of works by Xiaohui Wu

A classification-based prediction model of messenger RNA polyadenylation sites.

APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data.

AStrap: identification of alternative splicing from transcript sequences without a reference genome

Alternative 3′-untranslated regions regulate high-salt tolerance of<i>Spartina alterniflora</i>

Alternative polyadenylation is involved in auxin-based plant growth and development.

Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms

Characterization and prediction of mRNA alternative polyadenylation sites in rice genes

Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis

Differential alternative polyadenylation contributes to the developmental divergence between two rice subspecies, japonica and indica

Distinct genome-wide alternative polyadenylation during the response to silicon availability in the marine diatom Thalassiosira pseudonana

Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation

Genome-Wide Comparative Analyses of Polyadenylation Signals in Eukaryotes Suggest a Possible Origin of the AAUAAA Signal

Genome-wide alternative polyadenylation dynamics in response to biotic and abiotic stresses in rice

Genome-wide characterization of intergenic polyadenylation sites redefines gene spaces in Arabidopsis thaliana.

Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis.

Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice.

Genome-wide dynamics of alternative polyadenylation in rice.

Genome-wide identification and predictive modeling of polyadenylation sites in eukaryotes

Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.

In silico prediction of mRNA poly(A) sites in Chlamydomonas reinhardtii.

Modeling of Genome-Wide Polyadenylation Signals in Xenopus tropicalis

PAcluster: Clustering polyadenylation site data using canonical correlation analysis.

PlantAPA: A Portal for Visualization and Analysis of Alternative Polyadenylation in Plants

PlantAPAdb: A Comprehensive Database for Alternative Polyadenylation Sites in Plants

Predictive modeling of plant messenger RNA polyadenylation sites.

Ratio-based analysis of differential mRNA processing and expression of a polyadenylation factor mutant pcfs4 using arabidopsis tiling microarray.

Regulatory network-based imputation of dropouts in single-cell RNA sequencing data

Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination.

TSAPA: identification of tissue-specific alternative polyadenylation sites in plants.

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.

scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data