List of works by Mateusz Kurcinski

A protocol for CABS-dock protein-peptide docking driven by side-chain contact information.

scientific article published on 18 August 2017

CABS-dock standalone: a toolbox for flexible protein-peptide docking

scientific article published on 01 October 2019

CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site

scientific article published on 5 May 2015

CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures.

scientific article published in July 2018

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility.

scientific article published in February 2019

Coarse-Grained Modeling of Peptide Docking Associated with Large Conformation Transitions of the Binding Protein: Troponin I Fragment-Troponin C System.

scientific article

Flexible docking of peptides to proteins using CABS-dock

scientific article published on 11 November 2019

Hierarchical modeling of protein interactions.

scientific article published on 13 February 2007

Highly Flexible Protein-Peptide Docking Using CABS-Dock.

scientific article published in January 2017

Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step.

scientific article

MSITE: a new computational tool for comparison of homological proteins in holo form.

scientific article published on 24 April 2010

Mechanism of Folding and Binding of an Intrinsically Disordered Protein As Revealed by ab Initio Simulations.

scientific article

Modeling EphB4-EphrinB2 protein-protein interaction using flexible docking of a short linear motif

scientific article published on 18 August 2017

Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.

scientific article published on 9 July 2015

Protein-peptide docking using CABS-dock and contact information

scientific article published on 01 November 2019

Protein-peptide docking: opportunities and challenges.

scientific article published on 4 May 2018

Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction.

scientific article published on December 2016

Protein-protein docking with large-scale backbone flexibility using coarse-grained Monte-Carlo simulations

scientific article published on 23 February 2021

Steps towards flexible docking: modeling of three-dimensional structures of the nuclear receptors bound with peptide ligands mimicking co-activators' sequences

scientific article published on 22 January 2007

Structural Insights into σ₁ Receptor Interactions with Opioid Ligands by Molecular Dynamics Simulations.

scientific article published on 18 February 2018

Theoretical study of molecular mechanism of binding TRAP220 coactivator to Retinoid X Receptor alpha, activated by 9-cis retinoic acid

scientific article published on 14 April 2010

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