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List of works by Rui Alves

A survey of HK, HPt, and RR domains and their organization in two-component systems and phosphorelay proteins of organisms with fully sequenced genomes.

scientific article

Automatic Methods for Carotid Contrast-Enhanced Ultrasound Imaging Quantification of Adventitial Vasa Vasorum

scientific article published on 08 September 2018

Biblio-MetReS: a bibliometric network reconstruction application and server.

scientific article

CheNER: a tool for the identification of chemical entities and their classes in biomedical literature.

scientific article published on 19 January 2015

CheNER: chemical named entity recognizer.

scientific article

Computer-assisted initial diagnosis of rare diseases

scientific article published on 21 July 2016

Cooperativity and saturation in biochemical networks: a saturable formalism using Taylor series approximations.

scientific article published in August 2007

Database constraints applied to metabolic pathway reconstruction tools

scientific article published on 17 August 2014

Editorial: Foundations of Theoretical Approaches in Systems Biology

scientific article published on 15 August 2018

Evolution based on domain combinations: the case of glutaredoxins

scientific article (publication date: 25 March 2009)

Identification of line-specific strategies for improving carotenoid production in synthetic maize through data-driven mathematical modeling.

scientific article

Identification of regulatory structure and kinetic parameters of biochemical networks via mixed-integer dynamic optimization

scientific article published on 31 October 2013

In silico pathway reconstruction: Iron-sulfur cluster biogenesis in Saccharomyces cerevisiae.

scientific article

Lipid fraction quality of milk produced by Minhota (Portuguese autochthonous breed) compared to Holstein Friesian cow's

article

MetReS, an Efficient Database for Genomic Applications.

scientific article published on 29 November 2017

Methods for and results from the study of design principles in molecular systems ⬇️

scientific article published on February 15, 2011

Minimization of biosynthetic costs in adaptive gene expression responses of yeast to environmental changes

scientific article

Non-invasive imaging techniques and assessment of carotid vasa vasorum neovascularization: Promises and pitfalls

scientific article published on 21 June 2018

Optimization and evolution in metabolic pathways: Global optimization techniques in Generalized Mass Action models

article

Quantitative Operating Principles of Yeast Metabolism during Adaptation to Heat Stress

scientific article published on 01 February 2018

Regulation of the Na+/K+-ATPase Ena1 Expression by Calcineurin/Crz1 under High pH Stress: A Quantitative Study

scientific article (publication date: 2016)

Relative amino acid composition signatures of organisms and environments

scientific article (publication date: 2013)

S-PC: An e-treatment application for management of smoke-quitting patients

scientific article published on 26 March 2014

Saccharomyces cerevisiae as a model organism: a comparative study

scientific article

Special issue on biological design principles.

scientific article published on 13 March 2011

Teaching systems biology.

scientific article

Two component systems: physiological effect of a third component.

scientific article

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