List of works - Yoshikazu Tanaka

A Dye-Decolorizing Peroxidase from Vibrio cholerae

scientific article

A compact optical design for Bragg reflections near backscattering

article

A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes

scientific article published on 30 April 2020

Application of photoactive yellow protein as a photoresponsive module for controlling hemolytic activity of staphylococcal α-hemolysin

scientific article published on 05 April 2012

Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA.

scientific article published on 24 April 2017

Biochemical and structural investigation of rutinosidase from Aspergillus oryzae

scientific article published on 20 November 2020

Circular dichroism spectra demonstrate formation of the thrombin-binding DNA aptamer G-quadruplex under stabilizing-cation-deficient conditions.

scientific article

Contributions of interfacial residues of human Interleukin15 to the specificity and affinity for its private alpha-receptor.

scientific article published on 3 May 2009

Cryo-EM reveals the asymmetric assembly of squid hemocyanin

scientific article published on 05 April 2019

Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 Å Resolution

scientific article

Crystal structure of the capsular polysaccharide synthesizing protein CapE of Staphylococcus aureus

scientific article

Crystal structure of the catalytic unit of GH 87-type α-1,3-glucanase Agl-KA from Bacillus circulans

scientific article published on 25 October 2019

Crystal structure of the enzyme CapF of Staphylococcus aureus reveals a unique architecture composed of two functional domains

scientific article

Crystallographic study of the 2-thioribothymidine-synthetic complex TtuA-TtuB from Thermus thermophilus.

scientific article

Cytoplasmic Heme-Binding Protein (HutX) from Vibrio cholerae Is an Intracellular Heme Transport Protein for the Heme-Degrading Enzyme, HutZ

scientific article

Dynamic elements govern the catalytic activity of CapE, a capsular polysaccharide-synthesizing enzyme from Staphylococcus aureus

scientific article

Encapsulation of biomacromolecules by soaking and co-crystallization into porous protein crystals of hemocyanin

scientific article published on 29 December 2018

Expression, purification, crystallization and preliminary diffraction analysis of CapF, a capsular polysaccharide-synthesis enzyme from Staphylococcus aureus.

scientific article published on 23 May 2008

Heme Binding to Porphobilinogen Deaminase from Vibrio cholerae Decelerates the Formation of 1-Hydroxymethylbilane

scientific article published on 23 January 2018

How protein recognizes ladder-like polycyclic ethers. Interactions between ciguatoxin (CTX3C) fragments and its specific antibody 10C9

scientific article

Human NAT10 is an ATP-dependent RNA acetyltransferase responsible for N4-acetylcytidine formation in 18 S ribosomal RNA (rRNA)

scientific journal article

Intermolecular ionic interactions serve as a possible switch for stem release in the staphylococcal bi-component toxin for β-barrel pore assembly

scientific article published on 10 October 2018

Molecular basis of recognition of antibacterial porphyrins by heme-transporter IsdH-NEAT3 of Staphylococcus aureus

scientific article

Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages

scientific article published on 21 October 2014

Observation of field-induced magnetic and structural transitions in an antiferromagnet by means of synchrotron x-rays

P19 embryonal carcinoma cells exhibit high sensitivity to botulinum type C and D/C mosaic neurotoxins ⬇️

scientific article published on October 1, 2012

Protein encapsulation in the hollow space of hemocyanin crystals containing a covalently conjugated ligand

scientific article published on 20 April 2019

Rim domain loops of staphylococcal β-pore forming bi-component toxin S-components recognize target human erythrocytes in a coordinated manner

scientific article published on 01 August 2018

SDS-induced oligomerization of Lys49-phospholipase A2 from snake venom

scientific article published on 20 February 2019

Staphylococcus aureus giant protein Ebh is involved in tolerance to transient hyperosmotic pressure.

scientific article published on 17 July 2008

Structural and energetic hot-spots for the interaction between a ladder-like polycyclic ether and the anti-ciguatoxin antibody 10C9Fab ⬇️

scientific article published on December 15, 2010

Structural basis for pore-forming mechanism of staphylococcal α-hemolysin

scientific article

Structural basis for recognition of a kink-turn motif by an archaeal homologue of human RNase P protein Rpp38

scientific article

Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL

scientific article

Structure-based analysis reveals hydration changes induced by arginine hydrochloride.

scientific article

Synchrotron X-ray Diffraction Studies of the Incommensurate Phase of a Spin–Peierls System CuGeO3in Strong Magnetic Fields

Temperature and salt concentration alter base-sequence selectivity of a duplex DNA-binding protein

scientific article published on 01 January 2010

The N-terminal domain of elastin-binding protein of Staphylococcus aureus changes its secondary structure in a membrane-mimetic environment

scientific article published on 23 July 2007

The [4Fe-4S] cluster of sulfurtransferase TtuA desulfurizes TtuB during tRNA modification in Thermus thermophilus

scientific article published on 07 April 2020

The interaction of hyperthermophilic TATA-box binding protein with single-stranded DNA is entropically favorable and exhibits a large negative heat capacity change at high salt concentration

scientific article published on 13 May 2009

Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528

scientific article

pH regulates pore formation of a protease activated Vip3Aa from Bacillus thuringiensis

scientific article published on 30 August 2017

List of works by Yoshikazu Tanaka

A Dye-Decolorizing Peroxidase from Vibrio cholerae

A compact optical design for Bragg reflections near backscattering

A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes

Application of photoactive yellow protein as a photoresponsive module for controlling hemolytic activity of staphylococcal α-hemolysin

Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA.

Biochemical and structural investigation of rutinosidase from Aspergillus oryzae

Circular dichroism spectra demonstrate formation of the thrombin-binding DNA aptamer G-quadruplex under stabilizing-cation-deficient conditions.

Contributions of interfacial residues of human Interleukin15 to the specificity and affinity for its private alpha-receptor.

Cryo-EM reveals the asymmetric assembly of squid hemocyanin

Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 Å Resolution

Crystal structure of the capsular polysaccharide synthesizing protein CapE of Staphylococcus aureus

Crystal structure of the catalytic unit of GH 87-type α-1,3-glucanase Agl-KA from Bacillus circulans

Crystal structure of the enzyme CapF of Staphylococcus aureus reveals a unique architecture composed of two functional domains

Crystallographic study of the 2-thioribothymidine-synthetic complex TtuA-TtuB from Thermus thermophilus.

Cytoplasmic Heme-Binding Protein (HutX) from Vibrio cholerae Is an Intracellular Heme Transport Protein for the Heme-Degrading Enzyme, HutZ

Dynamic elements govern the catalytic activity of CapE, a capsular polysaccharide-synthesizing enzyme from Staphylococcus aureus

Encapsulation of biomacromolecules by soaking and co-crystallization into porous protein crystals of hemocyanin

Expression, purification, crystallization and preliminary diffraction analysis of CapF, a capsular polysaccharide-synthesis enzyme from Staphylococcus aureus.

Heme Binding to Porphobilinogen Deaminase from Vibrio cholerae Decelerates the Formation of 1-Hydroxymethylbilane

How protein recognizes ladder-like polycyclic ethers. Interactions between ciguatoxin (CTX3C) fragments and its specific antibody 10C9

Human NAT10 is an ATP-dependent RNA acetyltransferase responsible for N4-acetylcytidine formation in 18 S ribosomal RNA (rRNA)

Intermolecular ionic interactions serve as a possible switch for stem release in the staphylococcal bi-component toxin for β-barrel pore assembly

Molecular basis of recognition of antibacterial porphyrins by heme-transporter IsdH-NEAT3 of Staphylococcus aureus

Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages

Observation of field-induced magnetic and structural transitions in an antiferromagnet by means of synchrotron x-rays

P19 embryonal carcinoma cells exhibit high sensitivity to botulinum type C and D/C mosaic neurotoxins ⬇️

Protein encapsulation in the hollow space of hemocyanin crystals containing a covalently conjugated ligand

Rim domain loops of staphylococcal β-pore forming bi-component toxin S-components recognize target human erythrocytes in a coordinated manner

SDS-induced oligomerization of Lys49-phospholipase A2 from snake venom

Staphylococcus aureus giant protein Ebh is involved in tolerance to transient hyperosmotic pressure.

Structural and energetic hot-spots for the interaction between a ladder-like polycyclic ether and the anti-ciguatoxin antibody 10C9Fab ⬇️

Structural basis for pore-forming mechanism of staphylococcal α-hemolysin

Structural basis for recognition of a kink-turn motif by an archaeal homologue of human RNase P protein Rpp38

Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL

Structure-based analysis reveals hydration changes induced by arginine hydrochloride.

Synchrotron X-ray Diffraction Studies of the Incommensurate Phase of a Spin–Peierls System CuGeO3in Strong Magnetic Fields

Temperature and salt concentration alter base-sequence selectivity of a duplex DNA-binding protein

The N-terminal domain of elastin-binding protein of Staphylococcus aureus changes its secondary structure in a membrane-mimetic environment

The [4Fe-4S] cluster of sulfurtransferase TtuA desulfurizes TtuB during tRNA modification in Thermus thermophilus

The interaction of hyperthermophilic TATA-box binding protein with single-stranded DNA is entropically favorable and exhibits a large negative heat capacity change at high salt concentration

Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528

pH regulates pore formation of a protease activated Vip3Aa from Bacillus thuringiensis