Search filters

List of works by Katherine A. Hoadley

A Consensus Molecular Classification of Muscle-invasive Bladder Cancer

scientific article published on 26 September 2019

A Pan-Cancer and Polygenic Bayesian Hierarchical Model for the Effect of Somatic Mutations on Survival

scientific article published on 17 February 2020

Age at diagnosis, obesity, smoking, and molecular subtypes in muscle-invasive bladder cancer.

scientific article

Amplification of SOX4 promotes PI3K/Akt signaling in human breast cancer

scientific article

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.

scientific article

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

scientific article published in April 2018

An approach for normalization and quality control for NanoString RNA expression data

scientific article published on 13 August 2020

An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer.

scientific article published on 28 July 2009

Androgen Receptor mRNA Expression in Urothelial Carcinoma of the Bladder: A Retrospective Analysis of Two Independent Cohorts

scientific article published on 02 March 2019

Assessment of Long-term Distant Recurrence-Free Survival Associated With Tamoxifen Therapy in Postmenopausal Patients With Luminal A or Luminal B Breast Cancer

scientific article published on 08 August 2019

Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data

scientific article published on 01 July 2019

Bidimensional linked matrix factorization for pan-omics pan-cancer analysis

scientific article published in 2022

Bladder Cancer Molecular Taxonomy: Summary from a Consensus Meeting

scientific article published on 07 January 2016

BreakTrans: uncovering the genomic architecture of gene fusions

scientific article

Carboplatin in BRCA1/2-mutated and triple-negative breast cancer BRCAness subgroups: the TNT Trial

scientific article published on 30 April 2018

Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

scientific article published in April 2018

Cell-type-specific responses to chemotherapeutics in breast cancer

scientific article published on June 2004

Comparison of Breast Cancer Molecular Features and Survival by African and European Ancestry in The Cancer Genome Atlas

scientific article published on 4 May 2017

Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling

scientific article

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

article

Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer

scientific article published on 01 May 2020

Comprehensive Characterization of Cancer Driver Genes and Mutations

article

Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer

scientific article

Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer

scientific article published on 01 August 2018

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma

scientific article published on 4 November 2015

Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

scientific article

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma

scientific article

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma

article

Correction: An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer.

scientific article published on 12 July 2011

Correction: Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes.

scientific article published on 16 July 2013

Correction: Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes.

scientific article published on 16 January 2014

Correction: Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes.

scientific article published on 15 March 2018

Correction: Targeting EGFR Induced Oxidative Stress by PARP1 Inhibition in Glioblastoma Therapy.

scientific article

Correction: Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases

scientific article

DNA defects, epigenetics, and gene expression in cancer-adjacent breast: a study from The Cancer Genome Atlas

scientific article

Development of an immuno tandem mass spectrometry (iMALDI) assay for EGFR diagnosis

scientific article published on 01 December 2007

Differences in race, molecular and tumor characteristics among women diagnosed with invasive ductal and lobular breast carcinomas

scientific article published on 08 January 2019

Dynamic reprogramming of the kinome in response to targeted MEK inhibition in triple-negative breast cancer

scientific article published in April 2012

EGFR associated expression profiles vary with breast tumor subtype

scientific article

FFPE Sequencing and Bioinformatics

FOXM1 Deubiquitination by USP21 Regulates Cell Cycle Progression and Paclitaxel Sensitivity in Basal-like Breast Cancer

scientific article published on 01 March 2019

Functional Annotation of ESR1 Gene Fusions in Estrogen Receptor-Positive Breast Cancer

article

Gain-of-Function RHOA Mutations Promote Focal Adhesion Kinase Activation and Dependency in Diffuse Gastric Cancer

scientific article published on 26 November 2019

Gene expression patterns associated with p53 status in breast cancer.

scientific article published on 6 December 2006

Genetic determinants of the molecular portraits of epithelial cancers

scientific article published on 11 December 2019

Genomic Analysis of Immune Cell Infiltrates Across 11 Tumor Types

scientific article published on 22 June 2016

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

scientific article

Genomic basis for RNA alterations in cancer

scientific article published on 05 February 2020

Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

scientific article published in April 2018

Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma

scientific article

Identification of mRNA isoform switching in breast cancer

scientific article

Impact of Molecular Subtypes in Muscle-invasive Bladder Cancer on Predicting Response and Survival after Neoadjuvant Chemotherapy

scientific article

Impact of stromal microenvironment on metabolic phenotypes in breast cancer: evidence for stroma-influenced Warburg effect

scientific article

Impact of tumor microenvironment and epithelial phenotypes on metabolism in breast cancer

scientific article published on 12 December 2012

In silico APC/C substrate discovery reveals cell cycle-dependent degradation of UHRF1 and other chromatin regulators

scientific article published on 11 December 2020

Integrated Analysis of RNA and DNA from the Phase III Trial CALGB 40601 Identifies Predictors of Response to Trastuzumab-Based Neoadjuvant Chemotherapy in HER2-Positive Breast Cancer

scientific article published on 23 July 2018

Integrated RNA and DNA sequencing improves mutation detection in low purity tumors.

scientific article

Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer

scientific article published on 26 February 2018

Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

scientific article

Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma

scientific article published on August 2017

Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma

scientific article

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles

scientific article

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles

article

Integrative Molecular Characterization of Malignant Pleural Mesothelioma

scientific article published on 15 October 2018

Intratumor Heterogeneity of the Estrogen Receptor and the Long-term Risk of Fatal Breast Cancer

scientific article published on 19 January 2018

Intrinsic subtypes of high-grade bladder cancer reflect the hallmarks of breast cancer biology

scientific article published on 11 February 2014

JOINT AND INDIVIDUAL ANALYSIS OF BREAST CANCER HISTOLOGIC IMAGES AND GENOMIC COVARIATES

scientific article published on 21 December 2021

JOINT AND INDIVIDUAL VARIATION EXPLAINED (JIVE) FOR INTEGRATED ANALYSIS OF MULTIPLE DATA TYPES.

scientific article

Lung squamous cell carcinoma mRNA expression subtypes are reproducible, clinically important, and correspond to normal cell types

scientific article

MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays

scientific article published on 05 May 2016

Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation

scientific article published in April 2018

Molecular Features of Cancers Exhibiting Exceptional Responses to Treatment

scientific article published on 16 November 2020

Molecular Heterogeneity and Response to Neoadjuvant Human Epidermal Growth Factor Receptor 2 Targeting in CALGB 40601, a Randomized Phase III Trial of Paclitaxel Plus Trastuzumab With or Without Lapatinib.

scientific article

Molecular features of the basal-like breast cancer subtype based on BRCA1 mutation status

scientific article

Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes.

scientific article

Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin

scientific article

National Cancer Institute Biospecimen Evidence-Based Practices: Harmonizing Procedures for Nucleic Acid Extraction from Formalin-Fixed, Paraffin-Embedded Tissue

scientific article published on 19 June 2018

Nuclear Localized LSR: A Novel Regulator of Breast Cancer Behavior and Tumorigenesis.

scientific article published on 17 November 2016

Oncometabolite D-2-Hydroxyglutarate Inhibits ALKBH DNA Repair Enzymes and Sensitizes IDH Mutant Cells to Alkylating Agents.

scientific article published on 9 December 2015

Overexpression of miR-146a in basal-like breast cancer cells confers enhanced tumorigenic potential in association with altered p53 status

scientific article

PAM50 Molecular Intrinsic Subtypes in the Nurses' Health Study Cohorts

scientific article published on 27 December 2018

Pathological response in a triple negative breast cancer cohort treated with neoadjuvant carboplatin and docetaxel according to Lehmann's refined classification.

scientific article

Patterns of cell cycle checkpoint deregulation associated with intrinsic molecular subtypes of human breast cancer cells

scientific article

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

scientific article published in April 2018

Potential tumor suppressor role for the c-Myb oncogene in luminal breast cancer.

scientific article

Prediction of toxicant-specific gene expression signatures after chemotherapeutic treatment of breast cell lines

scientific article

Prognostic B-cell signatures using mRNA-seq in patients with subtype-specific breast and ovarian cancer

scientific article

Prognostic value of B cells in cutaneous melanoma

scientific article published on 28 May 2019

Prognostically relevant gene signatures of high-grade serous ovarian carcinoma

scientific article

Protein-based immune profiles of basal-like vs. luminal breast cancers

scientific article published on 23 February 2021

Proteomic profiling of patient-derived glioblastoma xenografts identifies a subset with activated EGFR: implications for drug development.

scientific article published on 12 February 2015

Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set

scientific article

RNA expression analysis of formalin-fixed paraffin-embedded tumors

article

Racial Differences in PAM50 Subtypes in the Carolina Breast Cancer Study

scientific article published on February 2018

Reply To Kenneth B. Yatai, Mark J. Dunning, Dennis Wang. Consensus Genomic Subtypes of Muscle-invasive Bladder Cancer: A Step in the Right Direction but Still a Long Way To Go. Eur Urol 2020;77:434-5

scientific article published on 07 February 2020

Reproductive risk factor associations with lobular and ductal carcinoma in the Carolina Breast Cancer Study.

scientific article published on 9 November 2017

Response and survival of breast cancer intrinsic subtypes following multi-agent neoadjuvant chemotherapy

scientific article

Subtyping sub-Saharan esophageal squamous cell carcinoma by comprehensive molecular analysis

scientific article

Subtyping sub-Saharan esophageal squamous cell carcinoma by comprehensive molecular analysis.

scientific article published on 16 November 2017

Survival, Pathologic Response, and Genomics in CALGB 40601 (Alliance), a Neoadjuvant Phase III Trial of Paclitaxel-Trastuzumab With or Without Lapatinib in HER2-Positive Breast Cancer

scientific article published on 23 October 2020

TBCRC 001: randomized phase II study of cetuximab in combination with carboplatin in stage IV triple-negative breast cancer

scientific article

TP53 Pathway Function, Estrogen Receptor Status, and Breast Cancer Risk Factors in the Carolina Breast Cancer Study

scientific article published in 2021

TP53 protein levels, RNA-based pathway assessment, and race among invasive breast cancer cases.

scientific article published on 25 June 2018

Targeting EGFR induced oxidative stress by PARP1 inhibition in glioblastoma therapy

scientific article

The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

article

The Cancer Genome Atlas Project on Muscle-invasive Bladder Cancer

scientific article published on 6 June 2015

The Immune Microenvironment in Hormone Receptor-Positive Breast Cancer Before and After Preoperative Chemotherapy

scientific article published on 06 May 2019

The Integrated Genomic Landscape of Thymic Epithelial Tumors

scientific article published in February 2018

The Prognostic Significance of Low-Frequency Somatic Mutations in Metastatic Cutaneous Melanoma

scientific article published on 01 January 2018

The chromatin accessibility landscape of primary human cancers

scientific article

The molecular basis of breast cancer pathological phenotypes

scientific article published on 14 November 2016

The molecular diversity of Luminal A breast tumors

scientific article published on 06 October 2013

Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases

scientific article

Tumor mutational burden is a determinant of immune-mediated survival in breast cancer

scientific article published on 30 July 2018

Tumor mutational landscape is a record of the pre-malignant state

Use of Molecular Tools to Identify Patients With Indolent Breast Cancers With Ultralow Risk Over 2 Decades.

scientific article published on 29 June 2017

Virtual microdissection identifies distinct tumor- and stroma-specific subtypes of pancreatic ductal adenocarcinoma.

scientific article published on 07 September 2015

Virus expression detection reveals RNA-sequencing contamination in TCGA

scientific article published on 28 January 2020

Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway

scientific article published on 2 February 2021

miR-181d: a predictive glioblastoma biomarker that downregulates MGMT expression

scientific article

Paulina is supported by:

About Paulina

Help