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List of works by Vinod Scaria

A Distinct Phylogenetic Cluster of Indian Severe Acute Respiratory Syndrome Coronavirus 2 Isolates

scientific article published on 18 September 2020

A founder mutation MLC1 c.736delA associated with megalencephalic leukoencephalopathy with subcortical cysts-1 in north Indian kindred.

scientific article published on 18 April 2018

A new strain of white spot syndrome virus affecting Litopenaeus vannamei in Indian shrimp farms.

scientific article

A sequence-based variation map of zebrafish

scientific article published on March 2013

An <i>Alu</i> insertion map of the Indian population: identification and analysis in 1021 genomes of the IndiGen project

scientific article published on 15 February 2022

Antagomirzymes: oligonucleotide enzymes that specifically silence microRNA function

scientific article

Antagonism of microRNA Function in Zebrafish Embryos by Using Locked Nucleic Acid Enzymes (LNAzymes)

scholarly article by Hemant Suryawanshi published in February 2012

Autosomal recessive epidermolysis bullosa simplex: report of three cases from India

scientific article published in October 2017

Chamber Specific Gene Expression Landscape of the Zebrafish Heart

scientific article

Cheminformatic models based on machine learning for pyruvate kinase inhibitors of Leishmania mexicana

scientific article

Cheminformatics models for inhibitors of Schistosoma mansoni thioredoxin glutathione reductase.

scientific article published on 25 November 2014

Clericuzio-type poikiloderma with neutropenia in a patient from India

scientific article published on 27 October 2020

Collaborative Computational Technologies for Biomedical Research

Collaborative Tools to Accelerate Neglected Disease Research: Open-Source Drug Discovery Model

Comparative analysis of human mitochondrial methylomes shows distinct patterns of epigenetic regulation in mitochondria

scientific article

Computational Analysis and In silico Predictive Modeling for Inhibitors of PhoP Regulon in S. typhi on High-Throughput Screening Bioassay Dataset.

scientific article

Computational analysis and predictive modeling of small molecule modulators of microRNA

scientific article published on 13 August 2012

Computational approaches towards understanding human long non-coding RNA biology

scientific article

Computational models for in-vitro anti-tubercular activity of molecules based on high-throughput chemical biology screening datasets

scientific article

Conceptual approaches for lncRNA drug discovery and future strategies

scientific article published on 05 May 2012

Consensus miRNA expression profiles derived from interplatform normalization of microarray data

scientific article

Crowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosis

scientific article

Data-mining of potential antitubercular activities from molecular ingredients of traditional Chinese medicines

scientific article

De novo identification of viral pathogens from cell culture hologenomes

scientific article

Distinct and Modular Organization of Protein Interacting Sites in Long Non-coding RNAs.

scientific article published on 4 April 2018

Distinct patterns of epigenetic marks and transcription factor binding sites across promoters of sense-intronic long noncoding RNAs

scientific article

Distinct patterns of genetic variations in potential functional elements in long noncoding RNAs

scientific article published on 25 November 2013

Does the buck stop with the bugs?: an overview of microbial dysbiosis in rheumatoid arthritis

scientific article published on 19 September 2015

DyNAVacS: an integrative tool for optimized DNA vaccine design

scientific article published on July 2006

Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish

scientific article (publication date: 2013)

FishMap Zv8 update--a genomic regulatory map of zebrafish

scientific article published in June 2010

FishMap: a community resource for zebrafish genomics

scientific article published on January 2008

Genetic epidemiology of Familial Mediterranean Fever through integrative analysis of whole genome and exome sequences from Middle East and North Africa

scientific article published on 09 June 2017

Genetic epidemiology of pharmacogenetic variants in South East Asian Malays using whole-genome sequences

scientific article

Genetic epidemiology of pharmacogenetic variations in CYP2C9, CYP4F2 and VKORC1 genes associated with warfarin dosage in the Indian population

scientific article published in July 2014

Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci

scientific article published on 25 August 2012

Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.

scientific article

Genome-wide computational analysis of potential long noncoding RNA mediated DNA:DNA:RNA triplexes in the human genome

scientific article published on 2 September 2017

Genomic variations in non-coding RNAs: Structure, function and regulation

scientific article

High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region

scientific article

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing

scientific article published on 17 February 2021

Host-virus genome interactions: macro roles for microRNAs

scientific article published on 18 October 2007

Host-virus interaction: a new role for microRNAs

scientific article

Hsp90-targeted miRNA-liposomal formulation for systemic antitumor effect

scientific article published on 14 June 2013

Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome

scientific article

Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication

scientific article (publication date: 23 December 2008)

Hydroxymethyl cytosine marks in the human mitochondrial genome are dynamic in nature

scientific article published on 27 January 2016

In vivo protein trapping produces a functional expression codex of the vertebrate proteome

scientific article published on 8 May 2011

Incidental and clinically actionable genetic variants in 1005 whole exomes and genomes from Qatar.

scientific article published on 20 March 2018

Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif

scientific article published on 30 May 2008

Insights into structural variations and genome rearrangements in prokaryotic genomes

scientific article published on 04 September 2014

Integrative transcriptome analysis suggest processing of a subset of long non-coding RNAs to small RNAs

scientific article published on 7 August 2012

Joining the long shots: emerging evidence on the role of long noncoding RNAs in rheumatoid arthritis

article

Long Non-Coding RNAs in Infection Biology

scientific article

Long noncoding RNAs could be potential key players in the pathophysiology of Sjögren's syndrome

Mapping human genetic diversity in Asia

scientific article

MicroRNA-mediated up-regulation of an alternatively polyadenylated variant of the mouse cytoplasmic {beta}-actin gene

scientific article

MicroRNAs: novel therapeutic targets in neurodegenerative diseases

scientific article published on 12 October 2009

MitoLSDB: a comprehensive resource to study genotype to phenotype correlations in human mitochondrial DNA variations

scientific article

Mitoepigenetics: The different shades of grey

scientific article published on 02 October 2015

Modulation of microRNA function by synthetic ribozymes.

scientific article published on 9 August 2010

Non-invasive detection of mycobacterium tuberculosis using IR and NIR spectroscopy

scholarly article published September 2012

Open source drug discovery--a new paradigm of collaborative research in tuberculosis drug development.

scientific article published on 22 July 2011

Organellar transcriptome sequencing reveals mitochondrial localization of nuclear encoded transcripts.

scientific article published on 24 February 2018

Pharmacogenetic landscape of DPYD variants in south Asian populations by integration of genome-scale data

scientific article published on 14 December 2017

Pharmacogenetic landscape of clopidogrel in north Indians suggest distinct interpopulation differences in allele frequencies

article published in 2014

Pharmacogenomics in the Era of Personal Genomics: A Quick Guide to Online Resources and Tools

Potential G-quadruplexes in the human long non-coding transcriptome

scientific article published in January 2012

Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features

scientific article published on 20 August 2009

Predictive modeling of anti-malarial molecules inhibiting apicoplast formation

scientific article

Predictive models for anti-tubercular molecules using machine learning on high-throughput biological screening datasets

scientific article

Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain

scientific article

Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences

scientific article published on July 2006

Reverse genetics screen in zebrafish identifies a role of miR-142a-3p in vascular development and integrity

scientific article

SCA-LSVD: a repeat-oriented locus-specific variation database for genotype to phenotype correlations in spinocerebellar ataxias

scientific article published on July 2009

Short stories on zebrafish long noncoding RNAs

scientific article

Software Platform for Metabolic Network Reconstruction of Mycobacterium tuberculosis

scholarly article published 25 October 2012

Spectrum of clinical features and genetic variants in mevalonate kinase (MVK) gene of South Indian families suffering from Hyperimmunoglobulin D Syndrome

scientific article published on 21 August 2020

Systematic analysis and functional annotation of variations in the genome of an Indian individual

scientific article

Systematic curation and analysis of genomic variations and their potential functional consequences in snoRNA loci

scientific article published on 6 July 2012

Systematic pharmacogenomics analysis of a Malay whole genome: proof of concept for personalized medicine

scientific article published in 2013

Systematic transcriptome wide analysis of lncRNA-miRNA interactions

scientific article

TBrowse: an integrative genomics map of Mycobacterium tuberculosis

scientific article

Targets for human encoded microRNAs in HIV genes

article

The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation

scientific article (publication date: 2014)

Time for the zebrafish ENCODE.

scientific article published in December 2013

Upregulation of miR-23a-27a-24-2 cluster induces caspase-dependent and -independent apoptosis in human embryonic kidney cells

scientific article

Whole-exome sequencing solves diagnostic dilemma in a rare case of sporadic acrokeratosis verruciformis

scientific article

dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation

scientific article

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs

scientific article published on 11 July 2013

miRvar: A comprehensive database for genomic variations in microRNAs

scientific article published on 24 February 2011

microRNA: an emerging therapeutic

scientific article published on June 2007

microRNAs in viral oncogenesis

scientific article

mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets

scientific article published on April 2015

tbvar: A comprehensive genome variation resource for Mycobacterium tuberculosis

scientific article published on 9 January 2014

zflncRNApedia: A Comprehensive Online Resource for Zebrafish Long Non-Coding RNAs

scientific article published on 11 June 2015

“Locked onto the target”: increasing the efficiency of antagomirzymes using locked nucleic acid modifications

scientific article published on November 2010

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