Search filters

List of works by Vasant Honavar

A Conceptual Framework for Secrecy-preserving Reasoning in Knowledge Bases

scientific article (publication date: 29 December 2014)

A Framework for Learning from Distributed Data Using Sufficient Statistics and its Application to Learning Decision Trees

scientific article

A Neural Architecture for Content as well as Address-based Storage and Recall: Theory and Applications

A Software Fault Tree Approach to Requirements Analysis of an Intrusion Detection System

article published in 2002

A Tableau-Based Federated Reasoning Algorithm for Modular Ontologies

A framework for developing epitope prediction tools

article

A framework for semantic web services discovery

article published in 2005

A neural-network architecture for syntax analysis

scientific article published on 01 January 1999

A proteomic analysis of maize chloroplast biogenesis

scientific article published in February 2004

A two-stage classifier for identification of protein-protein interface residues

scientific article published in August 2004

A user similarity-based Top- N recommendation approach for mobile in-application advertising

ANEXdb: an integrated animal ANnotation and microarray EXpression database

scientific article (publication date: 20 November 2009)

Abstraction Augmented Markov Models

scientific article published on December 2010

Acceptability of Personal Sensing to Develop a Digital Biomarker of Stress-Related Injury Risk in Athletes

scientific article published in May 2018

Algorithms and Software for Collaborative Discovery from Autonomous, Semantically Heterogeneous, Distributed Information Sources

scholarly article by Doina Caragea et al published 2005 in Lecture Notes in Computer Science

Algorithms and Software for Collaborative Discovery from Autonomous, Semantically Heterogeneous, Distributed Information Sources

Aligning Biomolecular Networks Using Modular Graph Kernels

An analysis of conformational changes upon RNA-protein binding

article

An incremental learning algorithm with confidence estimation for automated identification of NDE signals

scientific article published in August 2004

An object oriented approach to simulating large communication networks

article by Armin R. Mikler et al published February 1998 in Journal of Systems and Software

Analysis of Protein Protein Dimeric Interfaces

Animal trait ontology: The importance and usefulness of a unified trait vocabulary for animal species

scientific article (publication date: June 2008)

Annotating images and image objects using a hierarchical dirichlet process model

Assessing the Performance of Macromolecular Sequence Classifiers

scholarly article published October 2007

Attribute Value Taxonomy Generation through Matrix Based Adaptive Genetic Algorithm

Auto-steered Information-Decision Processes for Electric System Asset Management

Automata-Based Verification of Security Requirements of Composite Web Services

Automated data-driven discovery of motif-based protein function classifiers

article

Automated discovery of concise predictive rules for intrusion detection

Autonomous agents for coordinated distributed parameterized heuristic routing in large dynamic communication networks

B-cell ligand processing pathways detected by large-scale comparative analysis

scientific article published on 25 June 2012

BenSOA: A flexible service-oriented architecture for power system asset management

BioNetwork Bench: Database and Software for Storage, Query, and Analysis of Gene and Protein Networks.

scientific article published on 8 November 2012

Biomarker discovery in inflammatory bowel diseases using network-based feature selection

scientific article published on 22 November 2019

Building classifier ensembles for B-cell epitope prediction

scientific article

Characterization of protein-protein interfaces

scientific article

Characterization of the retinal proteome during rod photoreceptor genesis

scientific article

Combining Super-Structuring and Abstraction on Sequence Classification

Complexes of on-line self assembly

Composing Web Services through Automatic Reformulation of Service Specifications

Compositional Stochastic Average Gradient for Machine Learning and Related Applications

scientific article published in 2018

Computational prediction of protein interfaces: A review of data driven methods

scientific article

Constructive neural-network learning algorithms for pattern classification

scientific article published in January 2000

Data-Driven Theory Refinement Using KBDistAl

Design and Implementation of a Query Planner for Data Integration

Detection of Gene Orthology Based on Protein-Protein Interaction Networks

article

Detection of gene orthology from gene co-expression and protein interaction networks

scientific article (publication date: 2010)

Discovery informatics in biological and biomedical sciences: research challenges and opportunities

DistAl: An inter-pattern distance-based constructive learning algorithm

DockRank: Ranking docked conformations using partner-specific sequence homology-based protein interface prediction

scientific article (publication date: 17 October 2013)

Efficient Markov Network Structure Discovery Using Independence Tests.

scientific article published on May 2009

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach

scientific article (publication date: 2007)

Failure Analysis for Composition of Web Services Represented as Labeled Transition Systems

article

FastRNABindR: Fast and Accurate Prediction of Protein-RNA Interface Residues

scientific article (publication date: 6 July 2016)

Feature subset selection using a genetic algorithm

Federated ALCI: Preliminary Report

Generative learning structures and processes for generalized connectionist networks

Glycosylation site prediction using ensembles of Support Vector Machine classifiers

scientific article

HomPPI: a class of sequence homology based protein-protein interface prediction methods

scientific article

Identification of Surface Residues Involved in Protein-Protein Interaction — A Support Vector Machine Approach

Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach

scientific article

Identifying and Eliminating Inconsistencies in Mappings across Hierarchical Ontologies

Identifying interaction sites in "recalcitrant" proteins: predicted protein and RNA binding sites in rev proteins of HIV-1 and EIAV agree with experimental data

scientific article

Improving protein-RNA interface prediction by combining sequence homology based method with a naive Bayes classifier

In Silico Prediction of Linear B-Cell Epitopes on Proteins

scientific article published in January 2017

Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources

Information Integration from Semantically Heterogeneous Biological Data Sources

article published in 2005

Introduction to Systems Biology for Animal Scientists

article

Is the hippocampus a Kalman filter?

scientific article published in January 1998

LEARN++: an incremental learning algorithm for multilayer perceptron networks

Labeling Actors in Social Networks Using a Heterogeneous Graph Kernel

Labeling actors in multi-view social networks by integrating information from within and across multiple views

Learn++: an incremental learning algorithm for supervised neural networks

Learning Classifiers from Chains of Multiple Interlinked RDF Data Stores

article

Learning Classifiers from Distributional Data

article

Learning Classifiers from Large Databases Using Statistical Queries

Learning DFA from simple examples

Learning Link-Based Classifiers from Ontology-Extended Textual Data

Learning Link-Based Naïve Bayes Classifiers from Ontology-Extended Distributed Data

Learning Relational Bayesian Classifiers from RDF Data

Learning accurate and concise naïve Bayes classifiers from attribute value taxonomies and data

scientific article

Learning classifiers for misuse and anomaly detection using a bag of system calls representation

Learning classifiers from remote RDF data stores augmented with RDFS subclass hierarchies

Learning in Presence of Ontology Mapping Errors

Lightweight agents for intrusion detection

MICCLLR: Multiple-Instance Learning Using Class Conditional Log Likelihood Ratio

article by Yasser EL-Manzalawy & Vasant Honavar published 2009 in Lecture Notes in Computer Science

Machine Learning in Computational Biology

scientific article published in 2018

Machine learning

scholarly article published 27 December 1999

Methods for transcriptomic analyses of the porcine host immune response: Application to Salmonella infection using microarrays

scientific article (publication date: December 2010)

Microbiomarkers Discovery in Inflammatory Bowel Diseases using Network-Based Feature Selection

Min-redundancy and max-relevance multi-view feature selection for predicting ovarian cancer survival using multi-omics data

Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling

scientific article (publication date: 2009)

MoSCoE: AN APPROACH FOR COMPOSING WEB SERVICES THROUGH ITERATIVE REFORMULATION OF FUNCTIONAL SPECIFICATIONS

Mobile health technology evaluation: the mHealth evidence workshop

scientific article published on August 2013

Model Checking of Qualitative Sensitivity Preferences to Minimize Credential Disclosure

Modeling Web Services by Iterative Reformulation of Functional and Non-functional Requirements

Multi-Instance Multi-Label Learning for Image Classification with Large Vocabularies

scholarly article published 2011

Neural network design and the complexity of learning, by J. Stephen Judd. Cambridge, MA: MIT Press, 1990

scientific article published in 1992

On Context-Specific Substitutability of Web Services

On Evaluating MHC-II Binding Peptide Prediction Methods

scientific article (publication date: 24 September 2008)

On Utilizing Qualitative Preferences in Web Service Composition: A CP-net Based Approach

article

On the Semantics of Linking and Importing in Modular Ontologies

scientific article published in ISWC 2006

On the utility of abstraction in labeling actors in social networks

Ontology-guided Extraction of Complex Nested Relationships

PATENet: Pairwise Alignment of Time Evolving Networks

PREDICTING FLEXIBLE LENGTH LINEAR B-CELL EPITOPES

article published in 2008

PRIDB: a Protein-RNA interface database

scientific article

PSPACE Tableau Algorithms for Acyclic Modalized $\boldsymbol{\mathcal{ALC}}$

Package-Based Description Logics

Package-Based Description Logics - Preliminary Results

scientific article published in ISWC 2006

Partner‐specific Prediction of RNA‐binding Residues in Proteins: A Critical Assessment

scientific article published on 30 December 2018

Personalized Sleep Parameters Estimation from Actigraphy: A Machine Learning Approach

scientific article published on 11 December 2019

PlasmoSEP: Predicting surface-exposed proteins on the malaria parasite using semisupervised self-training and expert-annotated data

scientific article (publication date: December 2016)

Predicting DNA-binding sites of proteins from amino acid sequence

scientific article

Predicting MHC-II binding affinity using multiple instance regression

scientific article

Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information

Predicting RNA-protein interactions using only sequence information

scientific article

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods

scientific article

Predicting flexible length linear B-cell epitopes.

scientific article

Predicting linear B-cell epitopes using string kernels

scientific article published on July 2008

Predicting protective bacterial antigens using random forest classifiers

Predicting protein-protein interface residues using local surface structural similarity

scientific article (publication date: 2012)

Predicting the binding patterns of hub proteins: a study using yeast protein interaction networks

scientific article

Prediction of RNA binding sites in proteins from amino acid sequence

scientific article

Preference Based Service Adaptation Using Service Substitution

Privacy-Preserving Reasoning on the SemanticWeb

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

scientific article

Quo Vadis — A framework for intelligent routing in large communication networks

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins

scientific article (publication date: 8 May 2007)

RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins

scientific article (publication date: 2014)

Ranking Docked Models of Protein-Protein Complexes Using Predicted Partner-Specific Protein-Protein Interfaces: A Preliminary Study

Recent advances in B-cell epitope prediction methods

scientific article

Representing and Reasoning with Qualitative Preferences: Tools and Applications

scientific article (publication date: 12 January 2016)

SMART mobile agent facility

Scalable, updatable predictive models for sequence data

Secrecy-Preserving Query Answering for Instance Checking in $\mathcal{EL}$

article by Jia Tao et al published 2010 in Lecture Notes in Computer Science

Selecting and Composing Web Services through Iterative Reformulation of Functional Specifications

Semi-supervised prediction of protein subcellular localization using abstraction augmented Markov models

scientific article (publication date: 2010)

Semi-supervised sequence classification using abstraction augmented Markov models

Sequence-Based Prediction of RNA-Binding Residues in Proteins.

scientific article published in January 2017

Sleep/wake state prediction and sleep parameter estimation using unsupervised classification via clustering

Software fault tree and coloured Petri net based specification, design and implementation of agent-based intrusion detection systems

scientific article (publication date: 2007)

Spatial Learning and Localization in Rodents: A Computational Model of the Hippocampus and its Implications for Mobile Robots

Stimulating new and innovative perspectives on old and persistent problems: a commentary on "Attempters adherers and non-adherers: latent profile analysis of CPAP use with correlates" by Wohlgemuth et al.

scientific article published on 15 January 2015

Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches

scientific article published on January 2008

Struct-NB: predicting protein-RNA binding sites using structural features

scientific article

Structural characterization of RNA-binding sites of proteins: Preliminary results

Template-based protein-protein docking exploiting pairwise interfacial residue restraints

scientific article

Temporal Causality Analysis of Sentiment Change in a Cancer Survivor Network

scientific article

Temporal Causality of Social Support in an Online Community for Cancer Survivors

article

The Promise and Potential of Big Data: A Case for Discovery Informatics

The Virtual Data Collaboratory: A Regional Cyberinfrastructure for Collaborative Data-Driven Research

scientific article published on 03 March 2020

Toward personalized sleep-wake prediction from actigraphy

Towards the automatic generation of mobile agents for distributed intrusion detection system

Transportability from Multiple Environments with Limited Experiments ⬇️

scientific article published in January 2013

Unsupervised Learning of Probabilistic Context-Free Grammar using Iterative Biclustering

Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable

scientific article

Using Global Sequence Similarity to Enhance Biological Sequence Labeling

Using a seed-network to query multiple large-scale gene expression datasets from the developing retina in order to identify and prioritize experimental targets.

scientific article published on February 2008

Visual Methods for Examining SVM Classifiers

Web Service Substitution Based on Preferences Over Non-functional Attributes

article

iScore: A novel graph kernel-based function for scoring protein-protein docking models: Table S1,Table S2

scholarly article published 18 December 2018

iScore: a novel graph kernel-based function for scoring protein-protein docking models

scientific article published on 01 January 2020

Paulina is supported by:

About Paulina

Help