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List of works by Adam Hospital

A consensus view of protein dynamics

scientific article

A fast method for the determination of fractional contributions to solvation in proteins.

scientific article published on 25 September 2006

A procedure for identifying homologous alternative splicing events

scientific article

BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data

scientific article

BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations

scientific article published on 02 May 2022

Coarse-grained representation of protein flexibility. Foundations, successes, and shortcomings.

scientific article published on January 2011

DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p.

scientific article published on 29 November 2016

Exploration of conformational transition pathways from coarse-grained simulations.

scientific article published on 5 June 2013

Finding Conformational Transition Pathways from Discrete Molecular Dynamics Simulations.

scientific article published on 6 September 2012

FlexServ: an integrated tool for the analysis of protein flexibility.

scientific article published on 7 May 2009

How accurate are accurate force-fields for B-DNA?

scientific article published on 13 January 2017

Long-timescale dynamics of the Drew-Dickerson dodecamer.

scientific article published on 15 April 2016

MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations.

scientific article published on 21 March 2012

Mechanism of Structural Tuning of the Hepatitis C Virus Human Cellular Receptor CD81 Large Extracellular Loop.

scientific article

MoDEL (Molecular Dynamics Extended Library): a database of atomistic molecular dynamics trajectories

scientific article

Molecular dynamics simulations: advances and applications

scientific article

Molecular dynamics study of naturally existing cavity couplings in proteins

scientific article published on 27 March 2015

NAFlex: a web server for the study of nucleic acid flexibility.

scientific article

Predicting the Limit of Intramolecular Hydrogen Bonding with Classical Molecular Dynamics

scientific article published on 14 February 2019

Small Details Matter: The 2'-Hydroxyl as a Conformational Switch in RNA.

scientific article

The Multiple Roles of Waters in Protein Solvation

scientific article

The Role of Unconventional Hydrogen Bonds in Determining BII Propensities in B-DNA.

scientific article

Using interactive Jupyter Notebooks and BioConda for FAIR and reproducible biomolecular simulation workflows

scientific article published on 20 June 2024

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