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List of works by Amy Pruden

A Pilot Study of Chicago Waterways as Reservoirs of Multidrug-Resistant Enterobacteriaceae (MDR-Ent) in a High-Risk Region for Community-Acquired MDR-Ent Infection in Children

scientific article published on 24 March 2020

A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants

scientific article published on 21 August 2020

Abiotic reductive immobilization of U(VI) by biogenic mackinawite.

scientific article published on 20 February 2013

Active community profiling via capillary electrophoresis single-strand conformation polymorphism analysis of amplified 16S rRNA and 16S rRNA genes.

scientific article

AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata

scientific article published on 10 March 2021

Antibiotic resistance genes as emerging contaminants: studies in northern Colorado

scientific article

Antibiotic resistance profiles among mesophilic aerobic bacteria in Nigerian chicken litter and associated antibiotic resistance genes1.

scientific article published on 27 February 2015

Antibiotics in Agroecosystems: Introduction to the Special Section

scientific article published on March 2016

Anticipating challenges with in-building disinfection for control of opportunistic pathogens

scientific article

Antimicrobial nanotechnology: its potential for the effective management of microbial drug resistance and implications for research needs in microbial nanotoxicology

scientific article published on January 2013

Bacterial inactivation in open air by the afterglow plume emitted from a grounded hollow slot electrode.

scientific article

Balancing water sustainability and public health goals in the face of growing concerns about antibiotic resistance

scientific article published on 11 December 2013

Biodegradation of nanocrystalline cellulose by two environmentally-relevant consortia

scientific article

Chlorine Disinfection of Legionella spp., L. pneumophila, and Acanthamoeba under Warm Water Premise Plumbing Conditions

scientific article published on 22 September 2020

Combined effects of composting and antibiotic administration on cattle manure-borne antibiotic resistance genes

scientific article published on 01 April 2021

Comparison of CE-SSCP and DGGE for monitoring a complex microbial community remediating mine drainage

scientific article published on 16 January 2007

Comparison of Culture- and Quantitative PCR-Based Indicators of Antibiotic Resistance in Wastewater, Recycled Water, and Tap Water

scientific article published on 30 October 2019

Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016

scientific article published on 01 November 2019

Convective Mixing in Distal Pipes Exacerbates Legionella pneumophila Growth in Hot Water Plumbing

scientific article published on 12 March 2016

Critical Review: Propensity of Premise Plumbing Pipe Materials to Enhance or Diminish Growth of Legionella and Other Opportunistic Pathogens

scientific article published on 17 November 2020

Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes

scientific article published on 12 February 2021

Demonstrating an Integrated Antibiotic Resistance Gene Surveillance Approach in Puerto Rican Watersheds Post-Hurricane Maria

scientific article published on 18 November 2020

Distribution System Operational Deficiencies Coincide with Reported Legionnaires' Disease Clusters in Flint, MI.

scientific article published on 29 August 2017

Distribution System Water Quality Affects Responses of Opportunistic Pathogen Gene Markers in Household Water Heaters

scientific article published on 14 July 2015

Editorial: Antibiotic Resistance in Aquatic Systems

scientific article published on 25 January 2017

Effect of Disinfectant, Water Age, and Pipe Material on Occurrence and Persistence of Legionella, mycobacteria, Pseudomonas aeruginosa, and Two Amoebas ⬇️

scientific article published on October 25, 2012

Effect of GAC pre-treatment and disinfectant on microbial community structure and opportunistic pathogen occurrence ⬇️

scientific article published on July 16, 2013

Effect of Silver Nanoparticles and Antibiotics on Antibiotic Resistance Genes in Anaerobic Digestion ⬇️

scientific article published on May 1, 2013

Effect of bioaugmentation and biostimulation on sulfate-reducing column startup captured by functional gene profiling.

scientific article published on 13 June 2012

Effect of biostimulants on 2,4,6-trinitrotoluene (TNT) degradation and bacterial community composition in contaminated aquifer sediment enrichments.

scientific article published on 12 July 2012

Effect of disinfectant, water age, and pipe materials on bacterial and eukaryotic community structure in drinking water biofilm

scientific article

Effect of heat shock on hot water plumbing microbiota and Legionella pneumophila control

scientific article published on 9 February 2018

Effect of manure application on abundance of antibiotic resistance genes and their attenuation rates in soil: field-scale mass balance approach.

scientific article published on 17 February 2014

Effect of post-harvest interventions on surficial carrot bacterial community dynamics, pathogen survival, and antibiotic resistance

scientific article published on 10 November 2018

Effect of river landscape on the sediment concentrations of antibiotics and corresponding antibiotic resistance genes (ARG).

scientific article

Effect of temperature and colonization of Legionella pneumophila and Vermamoeba vermiformis on bacterial community composition of copper drinking water biofilms

scientific article

Effect of temperature on removal of antibiotic resistance genes by anaerobic digestion of activated sludge revealed by metagenomic approach

scientific article published on 21 May 2015

Effect of various sludge digestion conditions on sulfonamide, macrolide, and tetracycline resistance genes and class I integrons.

scientific article published on 19 August 2011

Effect of wastewater colloids on membrane removal of antibiotic resistance genes ⬇️

scientific article published on October 4, 2012

Effects of Copper on Legionella pneumophila Revealed via Viability Assays and Proteomics

scientific article published in 2024

Effects of Dairy Manure-Based Amendments and Soil Texture on Lettuce- and Radish-Associated Microbiota and Resistomes

scientific article published in 2019

Effects of sample preservation and DNA extraction on enumeration of antibiotic resistance genes in wastewater

scientific article published on 27 December 2017

Epidemiology and Ecology of Opportunistic Premise Plumbing Pathogens: Legionella pneumophila, Mycobacterium avium, and Pseudomonas aeruginosa

scientific article

Evaluation of Metagenomic-Enabled Antibiotic Resistance Surveillance at a Conventional Wastewater Treatment Plant

scientific article published on 13 May 2021

Every fifth published metagenome is not available to science

scientific article published on 03 April 2020

Excretion of Antibiotic Resistance Genes by Dairy Calves Fed Milk Replacers with Varying Doses of Antibiotics ⬇️

scientific article published on April 10, 2012

Factors Shaping the Human Exposome in the Built Environment: Opportunities for Engineering Control.

scientific article published on 5 July 2017

Gamma Irradiation Influences the Survival and Regrowth of Antibiotic-Resistant Bacteria and Antibiotic-Resistance Genes on Romaine Lettuce

article

Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm

scientific article published on 29 August 2019

Impact of Water Chemistry, Pipe Material and Stagnation on the Building Plumbing Microbiome

scientific article

Impact of blending for direct potable reuse on premise plumbing microbial ecology and regrowth of opportunistic pathogens and antibiotic resistant bacteria

scientific article published on 11 December 2018

Impact of water heater temperature setting and water use frequency on the building plumbing microbiome

scientific article

Influence of petroleum deposit geometry on local gradient of electron acceptors and microbial catabolic potential

scientific article

Inhibition of Adherence of Mycobacterium avium to Plumbing Surface Biofilms of Methylobacterium spp.

scientific article published on 14 September 2017

Integrated Metagenomic Assessment of Multiple Pre-harvest Control Points on Lettuce Resistomes at Field-Scale

scientific article published on 09 July 2021

Integrating Environmental Dimensions of “One Health” to Combat Antimicrobial Resistance: Essential Research Needs

scientific article published in 2022

Interactive Effects of Copper Pipe, Stagnation, Corrosion Control, and Disinfectant Residual Influenced Reduction of Legionella pneumophila during Simulations of the Flint Water Crisis

scientific article published on 04 September 2020

Interactive Effects of Corrosion, Copper, and Chloramines on Legionella and Mycobacteria in Hot Water Plumbing

scientific article published on 17 May 2017

Interactive effects of temperature, organic carbon, and pipe material on microbiota composition and Legionella pneumophila in hot water plumbing systems

scientific article

Legionella pneumophila occurrence in drinking water supplied by private wells

scientific article published on 24 January 2020

List of Contributors

scientific article published in 2019

Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge

scientific article published on 29 January 2022

Management options for reducing the release of antibiotics and antibiotic resistance genes to the environment

scientific article

Mediation of effects of biofiltration on bacterial regrowth, Legionella pneumophila, and the microbial community structure under hot water plumbing conditions

MetaStorm: A Public Resource for Customizable Metagenomics Annotation

scientific article

Metagenomic Analysis of Antibiotic Resistance Genes in Dairy Cow Feces following Therapeutic Administration of Third Generation Cephalosporin

scientific article published on 10 August 2015

Metagenomic analysis of microbial communities yields insight into impacts of nanoparticle design

scientific article published on 15 January 2018

Metagenomic profiling of historic Colorado Front Range flood impact on distribution of riverine antibiotic resistance genes

scientific article published on 05 December 2016

Methodological approaches for monitoring opportunistic pathogens in premise plumbing: A review

scientific article published on 25 March 2017

Microbial community analysis of two field-scale sulfate-reducing bioreactors treating mine drainage

scientific article published on 22 April 2008

Microbial community response of nitrifying sequencing batch reactors to silver, zero-valent iron, titanium dioxide and cerium dioxide nanomaterials

scientific article

Microbial community response to chlorine conversion in a chloraminated drinking water distribution system

scientific article

Microbial composition of purified waters and implications for regrowth control in municipal water systems

article

Molecular Methods for Assessment of Antibiotic Resistance in Agricultural Ecosystems: Prospects and Challenges.

scientific article published on March 2016

Molecular assessment of the sensitivity of sulfate-reducing microbial communities remediating mine drainage to aerobic stress

scientific article

Molecular survey of the occurrence of Legionella spp., Mycobacterium spp., Pseudomonas aeruginosa, and amoeba hosts in two chloraminated drinking water distribution systems

scientific article

Occurrence and transformation of veterinary antibiotics and antibiotic resistance genes in dairy manure treated by advanced anaerobic digestion and conventional treatment methods

scientific article published on 15 February 2018

Occurrence, fate and removal of synthetic oral contraceptives (SOCs) in the natural environment: a review.

scientific article published on 04 October 2011

Opportunistic Premise Plumbing Pathogens: Increasingly Important Pathogens in Drinking Water

scientific article

Partitioning of Viruses in Wastewater Systems and Potential for Aerosolization

scientific article

Probiotic approach to pathogen control in premise plumbing systems? A review

scientific article published on 04 September 2013

Reclaimed water as a reservoir of antibiotic resistance genes: distribution system and irrigation implications

scientific article published on 28 May 2013

Redox gradients in distribution systems influence water quality, corrosion, and microbial ecology

scientific article

Replicable simulation of distal hot water premise plumbing using convectively-mixed pipe reactors

scientific article published on 16 September 2020

Residential water heater cleaning and occurrence of Legionella in Flint, MI

scientific article published on 02 January 2020

Rethinking growth and decay kinetics in activated sludge - towards a new adaptive kinetics approach

scientific article published on February 2017

Shift in antibiotic resistance gene profiles associated with nanosilver during wastewater treatment

scientific article

Shotgun Metagenomics Reveals Taxonomic and Functional Shifts in Hot Water Microbiome Due to Temperature Setting and Stagnation

article

Silver Sulfidation in Thermophilic Anaerobic Digesters and Effects on Antibiotic Resistance Genes

scientific article published in January 2016

Stormwater loadings of antibiotic resistance genes in an urban stream

scientific article

Survival of Antibiotic Resistant Bacteria and Horizontal Gene Transfer Control Antibiotic Resistance Gene Content in Anaerobic Digesters

scientific article published on 8 March 2016

The Flint Water Crisis: Overturning the Research Paradigm to Advance Science and Defend Public Welfare

scientific article published on 17 August 2016

Three dimensional passivated-electrode insulator-based dielectrophoresis

scientific article

Toward a Comprehensive Strategy to Mitigate Dissemination of Environmental Sources of Antibiotic Resistance

scientific article published on 4 October 2017

Towards the standardization of Enterococcus culture methods for waterborne antibiotic resistance monitoring: A critical review of trends across studies

scientific article published in 2022

Toxicity of engineered nanomaterials and their transformation products following wastewater treatment on A549 human lung epithelial cells

scientific article published on 21 September 2014

Toxicity of particulate matter from incineration of nanowaste

article

Tracking Antibiotic Resistance Genes in the South Platte River Basin Using Molecular Signatures of Urban, Agricultural, And Pristine Sources ⬇️

scientific article published on October 1, 2010

Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution

scientific article published on 12 December 2014

Water and sanitation: an essential battlefront in the war on antimicrobial resistance

scientific article published on 01 September 2018

Water heater temperature set point and water use patterns influence Legionella pneumophila and associated microorganisms at the tap

scientific article

We Helped Flint Residents Save Themselves and Are Proud of It-Staying in Our Ivory Tower Would Have Perpetuated Injustice

scientific article published on 4 November 2016

Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secretion system and four novel putative type 1 secretion systems throughout the Legionella genus

scientific article published on 14 January 2020

Why Was My Paper Rejected without Review?

scientific article published on 16 September 2020

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