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List of works by Uri Alon

A Bacterial Growth Law out of Steady State

scientific article published on 01 June 2018

A Tunable Mechanism Determines the Duration of the Transgenerational Small RNA Inheritance in C. elegans

scientific article published on 01 March 2016

A cellular and regulatory map of the cholinergic nervous system of C. elegans.

scientific article published on 25 December 2015

A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli

scientific article

A comprehensive library of fluorescent transcriptional reporters for Escherichia coli

scientific article published in August 2006

A fluctuation method to quantify in vivo fluorescence data

scientific article

A fundamental trade-off in covalent switching and its circumvention by enzyme bifunctionality in glucose homeostasis

scientific article

A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli

scientific article (publication date: 2012)

A module of negative feedback regulators defines growth factor signaling

scientific article published on 25 February 2007

A new model for the HPA axis explains dysregulation of stress hormones on the timescale of weeks

scientific article published on 01 July 2020

A position statement on kidney disease from powdered infant formula-based melamine exposure in Chinese infants

scientific article published on 7 February 2009

A reduced-dimensionality approach to uncovering dyadic modes of body motion in conversations

scientific article

Accurate prediction of gene feedback circuit behavior from component properties

scientific article

Adaptive cyclic exit strategies from lockdown to suppress COVID-19 and allow economic activity

scientific article published on 07 April 2020

An Endogenously Tagged Fluorescent Fusion Protein Library in Mouse Embryonic Stem Cells

scientific article published on 26 September 2017

An analytically solvable model for rapid evolution of modular structure

scientific article

Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics

scientific article

Automated Video Analysis of Non-verbal Communication in a Medical Setting.

scientific article

Biphasic response as a mechanism against mutant takeover in tissue homeostasis circuits.

scientific article published on 26 June 2017

Central carbon metabolism as a minimal biochemical walk between precursors for biomass and energy

scientific article published on September 2010

Central dogma rates and the trade-off between precision and economy in gene expression

scientific article published in Nature Communications

Circuit Design Features of a Stable Two-Cell System

scientific article published on 30 January 2018

Coarse-graining and self-dissimilarity of complex networks

scientific article published on 21 January 2005

Coding limits on the number of transcription factors

scientific article published on 19 September 2006

Comparing apples and oranges: fold-change detection of multiple simultaneous inputs

scientific article

Continuum of Gene-Expression Profiles Provides Spatial Division of Labor within a Differentiated Cell Type

scientific article published on 09 January 2019

Correction: A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli.

scientific article published on 18 May 2012

Correction: A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli.

scientific article

Corrective jitter motion shows similar individual frequencies for the arm and the finger.

scientific article published on 29 January 2015

Cost of unneeded proteins in E. coli is reduced after several generations in exponential growth

scientific article published on 29 April 2010

Cost-benefit theory and optimal design of gene regulation functions

scientific article published on 7 November 2007

Creative exploration as a scale-invariant search on a meaning landscape

scientific article published in Nature Communications

Creative foraging: An experimental paradigm for studying exploration and discovery.

scientific article published on 2 August 2017

Defined order of evolutionary adaptations: experimental evidence

scientific article published in July 2008

Design principles of cell circuits with paradoxical components

scientific article

Detailed map of a cis-regulatory input function

scientific article

Developmental bias in the evolution of phalanges

scientific article (publication date: 5 November 2013)

Distinct extracellular-matrix remodeling events precede symptoms of inflammation

scientific article published on 24 November 2020

Diverse two-dimensional input functions control bacterial sugar genes

scientific article

Dramatic action: A theater-based paradigm for analyzing human interactions.

scientific article published on 8 March 2018

Dynamic Proteomics of Herpes Simplex Virus Infection.

scientific article published on 7 November 2017

Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells

scientific article

Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins

scientific article

Dynamic proteomics of human protein level and localization across the cell cycle

scientific article

Dynamic proteomics of individual cancer cells in response to a drug.

scientific article

Dynamic proteomics reveals bimodal protein dynamics of cancer cells in response to HSP90 inhibitor

scientific article

Dynamical compensation in physiological circuits

scientific article published on 8 November 2016

Dynamics and variability of ERK2 response to EGF in individual living cells

scientific article

Dynamics of the p53-Mdm2 feedback loop in individual cells

scientific article published on 18 January 2004

Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs

scientific article

Endocrine Autoimmune Disease as a Fragility of Immune Surveillance against Hypersecreting Mutants

scientific article published on 01 May 2020

Endocytosis as a stabilizing mechanism for tissue homeostasis.

scientific article published on 2 February 2018

Entrainment of noise-induced and limit cycle oscillators under weak noise.

scientific article published in June 2013

Environmental selection of the feed-forward loop circuit in gene-regulation networks.

scientific article

Environmental variability and modularity of bacterial metabolic networks

scientific article

Evolution of bow-tie architectures in biology

scientific article published on 23 March 2015

Evolutionary balancing of fitness-limiting factors.

scientific article published in June 2010

Evolutionary trade-offs and the structure of polymorphisms.

scientific article published in May 2018

Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space.

scientific article

Evolutionary tradeoffs between economy and effectiveness in biological homeostasis systems

scientific article (publication date: 2013)

Evolutionary tradeoffs, Pareto optimality and the morphology of ammonite shells

scientific article published on 7 March 2015

Exit from Synchrony in Joint Improvised Motion

scientific article

Extinctions in heterogeneous environments and the evolution of modularity

scientific article published on 10 March 2009

Facilitated variation: how evolution learns from past environments to generalize to new environments

scientific article

Fifty years after Jacob and Monod: what are the unanswered questions in molecular biology?

scientific article published in May 2011

Fold-change Response of Photosynthesis to Step Increases of Light Level

scholarly article published 26 September 2018

Fold-change detection and scalar symmetry of sensory input fields

scientific article

Fourier analysis and systems identification of the p53 feedback loop

scientific article

Gene regulation at the single-cell level

scientific article (publication date: 25 March 2005)

Generation of Double-Labeled Reporter Cell Lines for Studying Co-Dynamics of Endogenous Proteins in Individual Human Cells ⬇️

scientific article published on October 21, 2010

Generation of a fluorescently labeled endogenous protein library in living human cells

scientific article

Geometry of the Gene Expression Space of Individual Cells

scientific article published on 10 July 2015

Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP.

scientific article published on 25 April 2016

Hierarchy of non-glucose sugars in Escherichia coli

scientific article

How to build a motivated research group

scientific article

How to choose a good scientific problem

scientific article

How to give a good talk

scientific article published on 01 October 2009

Identity domains capture individual differences from across the behavioral repertoire

scientific article published on 04 November 2019

Individuality and togetherness in joint improvised motion

scientific article

Inferring biological tasks using Pareto analysis of high-dimensional data

scientific article

Input output robustness in simple bacterial signaling systems

scholarly article

Invariant distribution of promoter activities in Escherichia coli

scientific article published on 23 October 2009

Journal club

Just-in-time transcription program in metabolic pathways

scientific article published on 25 April 2004

Linear superposition and prediction of bacterial promoter activity dynamics in complex conditions

scientific article

Logarithmic and power law input-output relations in sensory systems with fold-change detection

scientific article

Manipulating the Placebo Response in Experimental Pain by Altering Doctor's Performance Style

scientific article (publication date: 2016)

Massively Parallel Interrogation of the Effects of Gene Expression Levels on Fitness

scientific article

Mode of Regulation and the Insulation of Bacterial Gene Expression ⬇️

scientific article published on May 25, 2012

Mutation rules and the evolution of sparseness and modularity in biological systems

scientific article (publication date: 2013)

Negative auto-regulation increases the input dynamic-range of the arabinose system of Escherichia coli ⬇️

scientific article published on July 12, 2011

Negative autoregulation speeds the response times of transcription networks

scientific article

Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction

scholarly article

Network motifs in the transcriptional regulation network of Escherichia coli

scientific article (publication date: May 2002)

Network motifs: simple building blocks of complex networks

scientific article (publication date: 25 October 2002)

Noise genetics: inferring protein function by correlating phenotype with protein levels and localization in individual human cells

scientific article

Noise-precision tradeoff in predicting combinations of mutations and drugs

scientific article published on 22 May 2019

Optimal Regulatory Circuit Topologies for Fold-Change Detection

scientific article published on 10 January 2017

Optimal gene partition into operons correlates with gene functional order

scientific article published on 18 September 2006

Optimality and evolutionary tuning of the expression level of a protein

scientific article

Optimality and sub-optimality in a bacterial growth law.

scientific article published on 19 January 2017

Oscillations and variability in the p53 system

scientific article

Paradoxical signaling by a secreted molecule leads to homeostasis of cell levels.

scientific article published in August 2014

Peer power: A women's peer-mentoring program at the workplace: example from the academia

scientific article published on 05 November 2018

Placebo can enhance creativity.

scientific article published on 11 September 2017

Plasticity of the cis-regulatory input function of a gene

scientific article published on 28 March 2006

Precise temporal modulation in the response of the SOS DNA repair network in individual bacteria

scientific article

Predicting and controlling the reactivity of immune cell populations against cancer

scientific article published on 28 April 2009

Prediction of drug cocktail effects when the number of measurements is limited

scientific article

Prediction of multidimensional drug dose responses based on measurements of drug pairs.

scientific article published on 25 August 2016

Prediction of ultra-high-order antibiotic combinations based on pairwise interactions

scientific article published on 30 January 2019

Principles of Cell Circuits for Tissue Repair and Fibrosis

scientific article published on 16 January 2020

Programming cells and tissues

scientific article published on 01 September 2018

Promoter activity dynamics in the lag phase of Escherichia coli.

scientific article

Promoters maintain their relative activity levels under different growth conditions

scientific article published on 29 October 2013

Protein dynamics in drug combinations: a linear superposition of individual-drug responses

scientific article

Protein dynamics in individual human cells: experiment and theory

scientific article

Proteome half-life dynamics in living human cells

scientific article

Publisher Correction: Creative exploration as a scale-invariant search on a meaning landscape

scientific article published on 24 February 2020

Response delays and the structure of transcription networks

scientific article

Response to comment on "Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space".

scientific article

Robust control of PEP formation rate in the carbon fixation pathway of C(4) plants by a bi-functional enzyme

scientific article published on 24 October 2011

Robust control of nitrogen assimilation by a bifunctional enzyme in E. coli.

scientific article published in January 2011

Robustness in glyoxylate bypass regulation

scientific article

Rules for biological regulation based on error minimization

scholarly article

Search for computational modules in the C. elegans brain

scientific article

Senescent cell accumulation mechanisms inferred from parabiosis

scientific article published on 25 November 2020

Sensitivity and Robustness in Chemical Reaction Networks

article by Guy Shinar et al published January 2009 in SIAM Journal on Applied Mathematics

Simplicity in biology

scientific article published in Nature

SnapShot: Network Motifs ⬇️

scientific article published on October 15, 2010

Spontaneous evolution of modularity and network motifs

scientific article published on 20 September 2005

Subgraphs and network motifs in geometric networks

scientific article published on 22 February 2005

Subgraphs in random networks ⬇️

scientific article published on August 25, 2003

Superfamilies of evolved and designed networks.

scientific article

Surface growth of a motile bacterial population resembles growth in a chemostat.

scientific article

The Mass-Longevity Triangle: Pareto Optimality and the Geometry of Life-History Trait Space

scientific article

The genetic code is nearly optimal for allowing additional information within protein-coding sequences

scientific article published on 9 February 2007

The geometry of the Pareto front in biological phenotype space

scientific article published on 17 April 2013

The immune-body cytokine network defines a social architecture of cell interactions

scientific article published on 24 October 2006

The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli

scientific article

The incoherent feed-forward loop can generate non-monotonic input functions for genes

scientific article

The incoherent feedforward loop can provide fold-change detection in gene regulation

scientific article

The last generation of bacterial growth in limiting nutrient ⬇️

scientific article published on March 25, 2013

The mirror game as a paradigm for studying the dynamics of two people improvising motion together ⬇️

scientific article published on December 12, 2011

The utility of paradoxical components in biological circuits

scientific article published on January 2013

Timescales of Human Hair Cortisol Dynamics

scientific article published on 26 August 2020

Topological generalizations of network motifs

scientific article published on 23 September 2004

Tumour heterogeneity and the evolutionary trade-offs of cancer

scientific article published on 24 February 2020

Understanding hydrogen-bond patterns in proteins using network motifs

scientific article

Uri Alon: Why truly innovative science demands a leap into the unknown

TEDGlobal 2013

Using a quantitative blueprint to reprogram the dynamics of the flagella gene network

scientific article published in June 2004

Using bleach-chase to measure protein half-lives in living cells.

scientific article

Variability and memory of protein levels in human cells

scientific article published on 19 November 2006

Varying environments can speed up evolution

scholarly article

Would you like to play together? Adults' attachment and the mirror game

scientific article published on 25 November 2015

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