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List of works by Stefani Thomas

Aberrant sphingomyelin/ceramide metabolic-induced neuronal endosomal/lysosomal dysfunction: potential pathological consequences in age-related neurodegeneration.

scientific article published on November 2003

Advances in mass spectrometry-based clinical biomarker discovery

scientific article

Alzheimer amyloid precursor aspartyl proteinase activity in CHAPSO homogenates of Spodoptera frugiperda cells.

scientific article

An Internal Standard-Assisted Synthesis and Degradation Proteomic Approach Reveals the Potential Linkage between VPS4B Depletion and Activation of Fatty Acidβ-Oxidation in Breast Cancer Cells ⬇️

scientific article published on February 4, 2013

Application of quantitative proteomics to the integrated analysis of the ubiquitylated and global proteomes of xenograft tumor tissues

scientific article published on 20 May 2015

Comparative analysis of the catalytic regulation of NEDD4-1 and WWP2 ubiquitin ligases

scientific article published on 02 October 2019

Dual modification of Alzheimer’s disease PHF-tau protein by lysine methylation and ubiquitylation: a mass spectrometry approach ⬇️

scientific article published on October 28, 2011

Enzymatic Analysis of PTEN Ubiquitylation by WWP2 and NEDD4-1 E3 Ligases

scientific article published on 13 June 2016

Exosomal Proteome Profiling: A Potential Multi-Marker Cellular Phenotyping Tool to Characterize Hypoxia-Induced Radiation Resistance in Breast Cancer.

scientific article

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

scientific article published on 28 June 2016

IsoQuant: a software tool for stable isotope labeling by amino acids in cell culture-based mass spectrometry quantitation.

scientific article published on 3 May 2012

Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity.

scientific article

MRMPlus: an open source quality control and assessment tool for SRM/MRM assay development.

scientific article published on 12 December 2015

Mass Spectrometry Analysis of Lysine Posttranslational Modifications of Tau Protein from Alzheimer's Disease Brain.

scientific article published on January 2017

Modification of Sialic Acids on Solid Phase: Accurate Characterization of Protein Sialylation

scientific article

Molecular Features of Phosphatase and Tensin Homolog (PTEN) Regulation by C-terminal Phosphorylation.

scientific article published on 11 May 2016

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

scientific article

Multiplexed Targeted Mass Spectrometry-Based Assays for the Quantification of N-Linked Glycosite-Containing Peptides in Serum

scientific article

N-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping

scientific article published on 07 September 2019

Neuronal endosomal/lysosomal membrane destabilization activates caspases and induces abnormal accumulation of the lipid secondary messenger ceramide.

scientific article published in February 2003

PhosphoScan: a probability-based method for phosphorylation site prediction using MS2/MS3 pair information.

scientific article

Proteomic analysis of protein phosphorylation and ubiquitination in Alzheimer's disease.

scientific article

Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues.

scientific article published on 10 November 2017

Quantitative proteomic analysis of mitochondrial proteins reveals prosurvival mechanisms in the perpetuation of radiation-induced genomic instability.

scientific article

Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays

scientific article published on January 2016

Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry

scientific article published on 01 July 2018

Site-Specific Fucosylation Analysis Identifying Glycoproteins Associated with Aggressive Prostate Cancer Cell Lines Using Tandem Affinity Enrichments of Intact Glycopeptides Followed by Mass Spectrometry

scientific article published on 19 June 2017

Targeted Proteomic Analyses of Histone H4 Acetylation Changes Associated with Homologous-Recombination-Deficient High-Grade Serous Ovarian Carcinomas

scientific article published on 2 September 2017

Targeted proteomic assays for the verification of global proteomics insights.

scientific article published in September 2016

Type IV pilus secretins have extracellular C termini.

scientific article

Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays

scientific article published on January 2016

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