List of works - Trevor Hastie

'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns

scientific article

1-norm Support Vector Machines ⬇️

scientific article published in January 2004

A Closer Look at the Deviance

A Method for Inferring Label Sampling Mechanisms in Semi-Supervised Learning ⬇️

scientific article published in January 2005

A Unified Near-Optimal Estimator For Dimension Reduction in l_alpha (0<alpha <= 2) Using Stable Random Projections ⬇️

scientific article published in January 2008

A clinico-genomic analysis of soft tissue sarcoma patients reveals CDKN2A deletion as a biomarker for poor prognosis

scientific article published on 11 September 2019

A fast and scalable framework for large-scale and ultrahigh-dimensional sparse regression with application to the UK Biobank

scientific article published on 23 October 2020

A fused lasso latent feature model for analyzing multi-sample aCGH data

scientific article

A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis

scientific article published on 17 April 2009

A statistical explanation of MaxEnt for ecologists

scientific article published in 2010

A working guide to boosted regression trees

scientific article published on 8 April 2008

Accuracy in Wrist-Worn, Sensor-Based Measurements of Heart Rate and Energy Expenditure in a Diverse Cohort

scientific article

Additive logistic regression: a statistical view of boosting

scientific article published in 2000

An Introduction to Statistical Learning

textbook

An inflammatory aging clock (iAge) based on deep learning tracks multimorbidity, immunosenescence, frailty and cardiovascular aging

scientific article published on 12 July 2021

Aortic growth and development of partial false lumen thrombosis are associated with late adverse events in type B aortic dissection

scientific article published on 31 October 2019

Application of microarray analyses to identify genes involved in radiation-induced fibrosis.

scientific article

Assessing the significance of global and local correlations under spatial autocorrelation: a nonparametric approach

scientific article

Association of cardiovascular events and lipoprotein particle size: Development of a risk score based on functional data analysis

article

Automated Survival Prediction in Metastatic Cancer Patients Using High-Dimensional Electronic Medical Record Data

article

Averaged gene expressions for regression

scientific article published on 11 May 2006

Bias correction in species distribution models: pooling survey and collection data for multiple species

scientific article

Brain anatomy, gender and IQ in children and adolescents with fragile X syndrome ⬇️

scientific article published in August 2001

CATS regression - a model-based approach to studying trait-based community assembly

article

CUSTOMIZED TRAINING WITH AN APPLICATION TO MASS SPECTROMETRIC IMAGING OF CANCER TISSUE ⬇️

Cell type-specific gene expression differences in complex tissues

scientific article published on 07 March 2010

Characterization of heterotypic interaction effects in vitro to deconvolute global gene expression profiles in cancer

scientific article published on January 2007

Classification by Pairwise Coupling ⬇️

Classification by pairwise coupling

scientific article published in Annals of Statistics in 1998

Classification of gene microarrays by penalized logistic regression

scientific article published on 01 July 2004

Clinically Relevant Molecular Subtypes in Leiomyosarcoma

scientific article

Combinatorial Extracellular Matrix Microenvironments for Probing Endothelial Differentiation of Human Pluripotent Stem Cells.

scientific article

Combinatorial extracellular matrix microenvironments promote survival and phenotype of human induced pluripotent stem cell-derived endothelial cells in hypoxia.

scientific article published on 4 August 2016

Combining biological gene expression signatures in predicting outcome in breast cancer: An alternative to supervised classification

scientific article published on 18 August 2008

Comparative performance of generalized additive models and multivariate adaptive regression splines for statistical modelling of species distributions

article

Components of genetic associations across 2,138 phenotypes in the UK Biobank highlight adipocyte biology

scientific article published on 06 September 2019

Components of genetic associations across 2,138 phenotypes in the UK Biobank highlight novel adipocyte biology

Compressive Feature Learning ⬇️

Conditional Random Sampling: A Sketch-based Sampling Technique for Sparse Data ⬇️

scientific article published in January 2007

Confidence Intervals for Random Forests: The Jackknife and the Infinitesimal Jackknife

scientific article published in January 2014

Construction of longitudinal prediction targets using semisupervised learning

scientific article published on January 2016

Coronary risk assessment among intermediate risk patients using a clinical and biomarker based algorithm developed and validated in two population cohorts

scientific article (publication date: November 2012)

Cortisol and behavior in fragile X syndrome

scientific article published in October 2002

Decreasing human body temperature in the United States since the industrial revolution

scientific article published on 7 January 2020

Deep Learning Convolutional Neural Networks for the Automatic Quantification of Muscle Fat Infiltration Following Whiplash Injury.

scientific article published on 28 May 2019

Detecting clinically meaningful biomarkers with repeated measurements: An illustration with electronic health records

scientific article published on 4 February 2015

Detection of Circulating Tumor DNA in Patients With Uterine Leiomyomas

scientific article published on 16 October 2019

Diagnosis of multiple cancer types by shrunken centroids of gene expression

scientific article

Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling

scientific article

Discriminant Adaptive Nearest Neighbor Classification and Regression ⬇️

scientific article published in January 1996

Dispersal, disturbance and the contrasting biogeographies of New Zealand’s diadromous and non-diadromous fish species

article

Does cancer risk affect health-related quality of life in patients with Barrett's esophagus?

scientific article published in January 2007

Effect of long-term antibiotic use on weight in adolescents with acne

scientific article published on 17 January 2016

Effective degrees of freedom: a flawed metaphor

scientific article published on 4 May 2015

Efficient quadratic regularization for expression arrays

scientific article published on 01 July 2004

Evaluating quantitative proton-density-mapping methods.

scientific article

Exact Covariance Thresholding into Connected Components for Large-Scale Graphical Lasso

scientific article published on March 2012

FIRE: functional inference of genetic variants that regulate gene expression

scientific article published on 24 August 2017

Finite-Sample Equivalence in Statistical Models for Presence-Only Data

scientific article

Flexible covariate effects in the proportional hazards model

scientific article published on January 1, 1992

Gene expression patterns in ovarian carcinomas

scientific article

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

scientific article (publication date: 11 September 2001)

Gene expression profiling of low-grade endometrial stromal sarcoma indicates fusion protein-mediated activation of the Wnt signaling pathway.

scientific article published on 12 March 2018

Gene expression programs in response to hypoxia: cell type specificity and prognostic significance in human cancers

scientific article

Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers

scientific article

Generalized linear and generalized additive models in studies of species distributions: setting the scene

article

Genome-wide association analysis by lasso penalized logistic regression

scientific article published on 28 January 2009

Human amygdala engagement moderated by early life stress exposure is a biobehavioral target for predicting recovery on antidepressants

scientific article published on 10 October 2016

Independent Components Analysis through Product Density Estimation ⬇️

scientific article published in January 2003

Inference from presence-only data; the ongoing controversy

scientific article

Ischemia in three left ventricular regions: Insights into the pathogenesis of acute ischemic mitral regurgitation

scientific article published on 01 March 2003

Kernel Logistic Regression and the Import Vector Machine ⬇️

LOCAL CASE-CONTROL SAMPLING: EFFICIENT SUBSAMPLING IN IMBALANCED DATA SETS.

scientific article

Learning Prototype Models for Tangent Distance ⬇️

scientific article published in January 1995

Learning and Tracking Cyclic Human Motion ⬇️

Learning interactions via hierarchical group-lasso regularization

scientific article

Learning the Structure of Mixed Graphical Models

scientific article published on January 2015

Least angle regression

article

Machine learning in human movement biomechanics: Best practices, common pitfalls, and new opportunities

scientific article published on 13 September 2018

Making better biogeographical predictions of species' distributions

article

Margin Maximizing Loss Functions ⬇️

scientific article published in January 2004

Matrix Completion and Low-Rank SVD via Fast Alternating Least Squares.

scientific article published in January 2015

Microarray analysis of the transcriptional response to single or multiple doses of ionizing radiation in human subcutaneous fibroblasts

scientific article published on 17 November 2005

Microelectrode recording revealing a somatotopic body map in the subthalamic nucleus in humans with Parkinson disease

scientific article published on April 2004

Missing value estimation methods for DNA microarrays

scientific article (publication date: June 2001)

Mitral annular size predicts Alfieri stitch tension in mitral edge-to-edge repair.

scientific article published in March 2004

NEW MULTICATEGORY BOOSTING ALGORITHMS BASED ON MULTICATEGORY FISHER-CONSISTENT LOSSES.

scientific article

Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets

scientific article

No increased mortality with early aortic aneurysm disease

scientific article

Note on "Comparison of model selection for regression" by Vladimir Cherkassky and Yunqian Ma.

scientific article published in July 2003

Nuclear penalized multinomial regression with an application to predicting at bat outcomes in baseball.

scientific article published on 11 June 2018

One sketch for all: Theory and Application of Conditional Random Sampling ⬇️

Optimal Kernel Shapes for Local Linear Regression ⬇️

scholarly article by Dirk Ormoneit & Trevor Hastie published 2000 in Advances in Neural Information Processing Systems 12

Optimization and evaluation of T7 based RNA linear amplification protocols for cDNA microarray analysis

scientific article

Outlier sums for differential gene expression analysis

scientific article published on 15 May 2006

Patient-derived health state utilities for gastroesophageal reflux disease

scientific article published in March 2005

Penalized logistic regression for detecting gene interactions.

scientific article published on 11 April 2007

Point process models for presence-only analysis

article

Polygenic risk modeling with latent trait-related genetic components

scientific article published in 2021

Post-transplantation lymphoproliferative disease in heart and heart-lung transplant recipients: 30-year experience at Stanford University

scientific article published in May 2003

Prediction by Supervised Principal Components

Presence-only data and the em algorithm

scientific article

Prognostic significance of early aortic remodeling in acute uncomplicated type B aortic dissection and intramural hematoma.

scientific article

Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial α-helical membrane anchors

scientific article published on 13 August 2018

Quantitative measurements of alternating finger tapping in Parkinson's disease correlate with UPDRS motor disability and reveal the improvement in fine motor control from medication and deep brain stimulation

scientific article

REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants

scientific article published on 21 September 2016

Radiation-induced gene expression in human subcutaneous fibroblasts is predictive of radiation-induced fibrosis

scientific article

Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent

scientific article

Regularization Paths for Generalized Linear Models via Coordinate Descent

scientific article (publication date: 2010)

Regularization and variable selection via the elastic net

scientific article published in April 2005

Regularized linear discriminant analysis and its application in microarrays

scientific article published on 7 April 2006

Repeated observation of breast tumor subtypes in independent gene expression data sets

scientific article (publication date: 8 July 2003)

Risk estimation of distant metastasis in node-negative, estrogen receptor-positive breast cancer patients using an RT-PCR based prognostic expression signature

scientific article

Risk factors for progressive cartilage loss in the knee: a longitudinal magnetic resonance imaging study in forty-three patients

scientific article published on 01 November 2002

Risk of asbestosis in crocidolite and amosite mines in South Africa ⬇️

scientific article published on January 1, 1979

Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival

scientific article

Sample classification from protein mass spectrometry, by 'peak probability contrasts'.

scientific article

Saturating Splines and Feature Selection

scientific article published on 01 April 2018

Selection of effects in Cox frailty models by regularization methods.

scientific article published on 13 January 2017

Significant sparse polygenic risk scores across 813 traits in UK Biobank

scientific article published on 24 March 2022

Some methods for heterogeneous treatment effect estimation in high dimensions

scientific article published on 6 March 2018

Sparse Discriminant Analysis

scientific article

Sparse EEG/MEG source estimation via a group lasso

scientific article

Sparse Principal Component Analysis

article by Hui Zou et al published June 2006 in Journal of Computational and Graphical Statistics

Sparse inverse covariance estimation with the graphical lasso

scientific article

SparseNet: Coordinate Descent With Nonconvex Penalties

scientific article

Spectral Regularization Algorithms for Learning Large Incomplete Matrices.

scientific article

Strong rules for discarding predictors in lasso-type problems

scientific article

Supervised harvesting of expression trees

scientific article

Survey of antibiotic resistance in gram-negative bacteria using the cross product ratio

scientific article published on June 1, 1979

Synergistic drug combinations from electronic health records and gene expression

scientific article published on 9 December 2016

Targeted use of growth mixture modeling: a learning perspective

scientific article published on 2 November 2016

The Elements of Statistical Learning ⬇️

book on statistical learning (second edition, 2009)

The Entire Regularization Path for the Support Vector Machine ⬇️

scientific article published in January 2005

The Error Coding and Substitution PaCTs ⬇️

The graphical lasso: New insights and alternatives

scientific article published on November 2012

The human connectome project for disordered emotional states: Protocol and rationale for a research domain criteria study of brain connectivity in young adult anxiety and depression

scientific article published on 05 March 2020

The mobilize center: an NIH big data to knowledge center to advance human movement research and improve mobility

scientific article

Unsupervised Learning

article

Variation in demersal fish species richness in the oceans surrounding New Zealand: an analysis using boosted regression trees

article

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

scientific article published on 26 January 2016

List of works by Trevor Hastie

'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns

1-norm Support Vector Machines ⬇️

A Closer Look at the Deviance

A Method for Inferring Label Sampling Mechanisms in Semi-Supervised Learning ⬇️

A Unified Near-Optimal Estimator For Dimension Reduction in l_alpha (0<alpha <= 2) Using Stable Random Projections ⬇️

A clinico-genomic analysis of soft tissue sarcoma patients reveals CDKN2A deletion as a biomarker for poor prognosis

A fast and scalable framework for large-scale and ultrahigh-dimensional sparse regression with application to the UK Biobank

A fused lasso latent feature model for analyzing multi-sample aCGH data

A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis

A statistical explanation of MaxEnt for ecologists

A working guide to boosted regression trees

Accuracy in Wrist-Worn, Sensor-Based Measurements of Heart Rate and Energy Expenditure in a Diverse Cohort

Additive logistic regression: a statistical view of boosting

An Introduction to Statistical Learning

An inflammatory aging clock (iAge) based on deep learning tracks multimorbidity, immunosenescence, frailty and cardiovascular aging

Aortic growth and development of partial false lumen thrombosis are associated with late adverse events in type B aortic dissection

Application of microarray analyses to identify genes involved in radiation-induced fibrosis.

Assessing the significance of global and local correlations under spatial autocorrelation: a nonparametric approach

Association of cardiovascular events and lipoprotein particle size: Development of a risk score based on functional data analysis

Automated Survival Prediction in Metastatic Cancer Patients Using High-Dimensional Electronic Medical Record Data

Averaged gene expressions for regression

Bias correction in species distribution models: pooling survey and collection data for multiple species

Brain anatomy, gender and IQ in children and adolescents with fragile X syndrome ⬇️

CATS regression - a model-based approach to studying trait-based community assembly

CUSTOMIZED TRAINING WITH AN APPLICATION TO MASS SPECTROMETRIC IMAGING OF CANCER TISSUE ⬇️

Cell type-specific gene expression differences in complex tissues

Characterization of heterotypic interaction effects in vitro to deconvolute global gene expression profiles in cancer

Classification by Pairwise Coupling ⬇️

Classification by pairwise coupling

Classification of gene microarrays by penalized logistic regression

Clinically Relevant Molecular Subtypes in Leiomyosarcoma

Combinatorial Extracellular Matrix Microenvironments for Probing Endothelial Differentiation of Human Pluripotent Stem Cells.

Combinatorial extracellular matrix microenvironments promote survival and phenotype of human induced pluripotent stem cell-derived endothelial cells in hypoxia.

Combining biological gene expression signatures in predicting outcome in breast cancer: An alternative to supervised classification

Comparative performance of generalized additive models and multivariate adaptive regression splines for statistical modelling of species distributions

Components of genetic associations across 2,138 phenotypes in the UK Biobank highlight adipocyte biology

Components of genetic associations across 2,138 phenotypes in the UK Biobank highlight novel adipocyte biology

Compressive Feature Learning ⬇️

Conditional Random Sampling: A Sketch-based Sampling Technique for Sparse Data ⬇️

Confidence Intervals for Random Forests: The Jackknife and the Infinitesimal Jackknife

Construction of longitudinal prediction targets using semisupervised learning

Coronary risk assessment among intermediate risk patients using a clinical and biomarker based algorithm developed and validated in two population cohorts

Cortisol and behavior in fragile X syndrome

Decreasing human body temperature in the United States since the industrial revolution

Deep Learning Convolutional Neural Networks for the Automatic Quantification of Muscle Fat Infiltration Following Whiplash Injury.

Detecting clinically meaningful biomarkers with repeated measurements: An illustration with electronic health records

Detection of Circulating Tumor DNA in Patients With Uterine Leiomyomas

Diagnosis of multiple cancer types by shrunken centroids of gene expression

Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling

Discriminant Adaptive Nearest Neighbor Classification and Regression ⬇️

Dispersal, disturbance and the contrasting biogeographies of New Zealand’s diadromous and non-diadromous fish species

Does cancer risk affect health-related quality of life in patients with Barrett's esophagus?

Effect of long-term antibiotic use on weight in adolescents with acne

Effective degrees of freedom: a flawed metaphor

Efficient quadratic regularization for expression arrays

Evaluating quantitative proton-density-mapping methods.

Exact Covariance Thresholding into Connected Components for Large-Scale Graphical Lasso

FIRE: functional inference of genetic variants that regulate gene expression

Finite-Sample Equivalence in Statistical Models for Presence-Only Data

Flexible covariate effects in the proportional hazards model

Gene expression patterns in ovarian carcinomas

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

Gene expression profiling of low-grade endometrial stromal sarcoma indicates fusion protein-mediated activation of the Wnt signaling pathway.

Gene expression programs in response to hypoxia: cell type specificity and prognostic significance in human cancers

Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers

Generalized linear and generalized additive models in studies of species distributions: setting the scene

Genome-wide association analysis by lasso penalized logistic regression

Human amygdala engagement moderated by early life stress exposure is a biobehavioral target for predicting recovery on antidepressants

Independent Components Analysis through Product Density Estimation ⬇️

Inference from presence-only data; the ongoing controversy

Ischemia in three left ventricular regions: Insights into the pathogenesis of acute ischemic mitral regurgitation

Kernel Logistic Regression and the Import Vector Machine ⬇️

LOCAL CASE-CONTROL SAMPLING: EFFICIENT SUBSAMPLING IN IMBALANCED DATA SETS.

Learning Prototype Models for Tangent Distance ⬇️

Learning and Tracking Cyclic Human Motion ⬇️

Learning interactions via hierarchical group-lasso regularization

Learning the Structure of Mixed Graphical Models

Least angle regression

Machine learning in human movement biomechanics: Best practices, common pitfalls, and new opportunities