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List of works by Jonathan Allen

A molecular portrait of maternal sepsis from Byzantine Troy

scientific article (publication date: 10 January 2017)

A novel variant of torque teno virus 7 identified in patients with Kawasaki disease

scientific article published in PLoS ONE

A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons.

scientific article published on 25 August 2006

Accelerators for Classical Molecular Dynamics Simulations of Biomolecules

scientific article published on 16 June 2022

Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array

scientific article

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

scientific article (publication date: 11 January 2008)

Characterization of Genetic Variability of Venezuelan Equine Encephalitis Viruses

scientific article

Conserved amino acid markers from past influenza pandemic strains.

scientific article

DNA signatures for detecting genetic engineering in bacteria.

scientific article published on 18 March 2008

Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces.

scientific article

Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station.

scientific article published on 10 August 2017

Draft Genome Sequences of Biosafety Level 2 Opportunistic Pathogens Isolated from the Environmental Surfaces of the International Space Station.

scientific article published on 29 December 2016

Erratum to: Whole metagenome profiles of particulates collected from the International Space Station

scientific article published on September 2017

FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science

scientific article published on 25 July 2019

Forensic interpretation of molecular variation on networks of disease transmission and genetic inheritance.

scientific article

Gene expression analysis of whole blood RNA from pigs infected with low and high pathogenic African swine fever viruses.

scientific article published on 31 August 2017

Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes

scientific article

MACAW: An Accessible Tool for Molecular Embedding and Inverse Molecular Design

scientific article published in 2022

Metagenomic analysis of the airborne environment in urban spaces

scientific article

Microbial profiling of combat wound infection through detection microarray and next-generation sequencing.

scientific article

Predicting tumor cell line response to drug pairs with deep learning

scientific article published on 21 December 2018

Scalable metagenomic taxonomy classification using a reference genome database ⬇️

scientific article published on July 4, 2013

Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing

scientific article published on 16 November 2015

The role of viral population diversity in adaptation of bovine coronavirus to new host environments

scientific article

Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs

scientific article

Ultra-deep sequencing of intra-host rabies virus populations during cross-species transmission

scientific article

Using populations of human and microbial genomes for organism detection in metagenomes

scientific article published on 29 April 2015

Whole metagenome profiles of particulates collected from the International Space Station.

scientific article

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