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List of works by Alma L Burlingame

A Molecular Cascade Modulates MAP1B and Confers Resistance to mTOR Inhibition in Human Glioblastoma

scientific article published on 9 November 2017

A brassinosteroid-signaling kinase interacts with multiple receptor-like kinases in Arabidopsis

scientific article published on 19 September 2013

A kinase cascade leading to Rab11-FIP5 controls transcytosis of the polymeric immunoglobulin receptor ⬇️

scientific article published on October 31, 2010

A mutually assured destruction mechanism attenuates light signaling in Arabidopsis

scientific article published on June 2014

A phosphatase holoenzyme comprised of Shoc2/Sur8 and the catalytic subunit of PP1 functions as an M-Ras effector to modulate Raf activity

scientific article

A proteomics study of brassinosteroid response in Arabidopsis

scientific article

A shared molecular mechanism underlies the human rasopathies Legius syndrome and Neurofibromatosis-1.

scientific article published on July 2012

A transmembrane accessory subunit that modulates kainate-type glutamate receptors

scientific article

A20 restricts ubiquitination of pro-interleukin-1β protein complexes and suppresses NLRP3 inflammasome activity

scientific article

ADAM22, a Kv1 channel-interacting protein, recruits membrane-associated guanylate kinases to juxtaparanodes of myelinated axons

scientific journal article

Actin cytoskeleton-dependent regulation of corticotropin-releasing factor receptor heteromers

scientific article published on 12 July 2017

Activation of HIPK2 Promotes ER Stress-Mediated Neurodegeneration in Amyotrophic Lateral Sclerosis

scientific article published on 15 June 2016

Activity-dependent protein dynamics define interconnected cores of co-regulated postsynaptic proteins

scientific article published on 3 October 2012

Age-related loss of neural stem cell O-GlcNAc promotes a glial fate switch through STAT3 activation

scientific article published on 26 August 2020

An MRAS, SHOC2, and SCRIB complex coordinates ERK pathway activation with polarity and tumorigenic growth

scientific article

An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis

scientific article published on August 2007

Antiinflammatory Effects of Budesonide in Human Fetal Lung

scientific article

Arabidopsis ACINUS is O-glycosylated and regulates transcription and alternative splicing of regulators of reproductive transitions

scientific article published on 11 February 2021

Arginine Methylation Initiates BMP-Induced Smad Signaling

scientific article

Atg19p ubiquitination and the cytoplasm to vacuole trafficking pathway in yeast

scientific article published on 26 September 2005

Atypical nicotinic agonist bound conformations conferring subtype selectivity

scholarly article

Axonal transport proteomics reveals mobilization of translation machinery to the lesion site in injured sciatic nerve

scientific article

Axoplasm isolation from peripheral nerve

scientific article

BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis

scientific article published in July 2008

Blue light-induced proteomic changes in etiolated Arabidopsis seedlings

scientific article

Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors

scientific article

Chemical approaches for functionally probing the proteome

scientific article

Chemical genetic approach for kinase-substrate mapping by covalent capture of thiophosphopeptides and analysis by mass spectrometry

scientific article published on March 2010

Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: I. How much of the data is theoretically interpretable by s

scientific article

Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliab

scientific article published on 3 June 2005

Comprehensive identification of phosphorylation sites in postsynaptic density preparations

scientific article published in February 2006

Concerted genomic targeting of H3K27 demethylase REF6 and chromatin-remodeling ATPase BRM in Arabidopsis

scientific article published on 25 April 2016

Correction: Global cellular response to chemotherapy-induced apoptosis.

scientific article published on 7 November 2013

Critical role for arginine methylation in adenovirus-infected cells

scientific article

Cysteine S-linked N-acetylglucosamine (S-GlcNAcylation), A New Post-translational Modification in Mammals

scientific article published on 24 August 2016

Data processing algorithms for analysis of high resolution MSMS spectra of peptides with complex patterns of posttranslational modifications

scientific article

Defining nicotinic agonist binding surfaces through photoaffinity labeling

scientific article published on 06 July 2007

Densin-180: revised membrane topology, domain structure and phosphorylation status

scientific article

Development of a Chemical Genetic Approach for Human Aurora B Kinase Identifies Novel Substrates of the Chromosomal Passenger Complex ⬇️

scientific article published on January 20, 2012

Differential proteomics reveals multiple components in retrogradely transported axoplasm after nerve injury.

scientific article

Differentiation of opioid drug effects by hierarchical multi-site phosphorylation

scientific article published on 13 December 2012

Discrete spatial organization of TGFβ receptors couples receptor multimerization and signaling to cellular tension

scientific article published on 10 December 2015

Erratum: The ubiquitin-modifying enzyme A20 restricts ubiquitination of the kinase RIPK3 and protects cells from necroptosis

scientific article published on June 2015

Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides

scientific article

Formation of epsilon-formyllysine on silver-stained proteins: implications for assignment of isobaric dimethylation sites by tandem mass spectrometry

scientific article published on 30 November 2006

From snails to sciatic nerve: Retrograde injury signaling from axon to soma in lesioned neurons.

scientific article published in February 2004

Genetic and mass spectrometric tools for elucidating the physiological function(s) of cytochrome P450 enzymes from Mycobacterium tuberculosis

scientific article published in January 2013

Global cellular response to chemotherapy-induced apoptosis

scientific article published on 29 October 2013

Global kinetic analysis of proteolysis via quantitative targeted proteomics

scientific article published on 23 January 2012

Glucose sensor O-GlcNAcylation coordinates with phosphorylation to regulate circadian clock

scientific article

Histone acetylation and deacetylation: identification of acetylation and methylation sites of HeLa histone H4 by mass spectrometry

scientific article

Human Proteinpedia enables sharing of human protein data

scientific article

Human antibodies targeting cell surface antigens overexpressed by the hormone refractory metastatic prostate cancer cells: ICAM-1 is a tumor antigen that mediates prostate cancer cell invasion

scientific article

Identification of BZR1-interacting proteins as potential components of the brassinosteroid signaling pathway in Arabidopsis through tandem affinity purification

scientific article published on 09 September 2013

Identification of O-linked β-D-N-acetylglucosamine-modified proteins from Arabidopsis

scientific article published on January 2012

Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization-postsource decay, and nanoelectrospr

scientific article

Identification of new p53 acetylation sites in COS-1 cells

scientific article published on 19 January 2009

Immunopurification and Mass Spectrometry Identifies Protein Phosphatase 2A (PP2A) and BIN2/GSK3 as Regulators of AKS Transcription Factors in Arabidopsis

scientific article published on 18 October 2016

Impact of low and high tidal volumes on the rat alveolar epithelial type II cell proteome

scientific article published on 15 March 2007

Innate immunity kinase TAK1 phosphorylates Rab1 on a hotspot for posttranslational modifications by host and pathogen

scientific article

Isolation and analyses of axonal ribonucleoprotein complexes

scientific article published on 02 September 2015

Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces

scientific article

Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry.

scientific article published on 5 October 2005

Mapping the elusive neonicotinoid binding site

scholarly article

Mass spectrometric analysis, automated identification and complete annotation of O-linked glycopeptides

scientific article published on January 2010

Modulating environmental signals to reveal mechanisms and vulnerabilities of cancer persisters

scientific article published on 28 January 2022

Multisite light-induced phosphorylation of the transcription factor PIF3 is necessary for both its rapid degradation and concomitant negative feedback modulation of photoreceptor phyB levels in Arabidopsis

scientific article published on 31 July 2013

Multisite phosphorylation of human liver cytochrome P450 3A4 enhances Its gp78- and CHIP-mediated ubiquitination: a pivotal role of its Ser-478 residue in the gp78-catalyzed reaction

scientific article

N- and O-glycosylation in the murine synaptosome

scientific article published on July 2013

N-Glycopeptide Profiling in Arabidopsis Inflorescence

scientific article published on 11 April 2016

Nicotinic agonist binding site mapped by methionine- and tyrosine-scanning coupled with azidochloropyridinyl photoaffinity labeling

scientific article published on June 2009

Normal protein composition of synapses in Ts65Dn mice: a mouse model of Down syndrome

scientific article published on 22 April 2009

Nucleolin-Mediated RNA Localization Regulates Neuron Growth and Cycling Cell Size

scientific article published on 27 July 2016

O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry

scientific article published on February 2006

PP2A activates brassinosteroid-responsive gene expression and plant growth by dephosphorylating BZR1.

scientific article

PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3.

scientific article published on 11 May 2017

Phosphopeptide screen uncovers novel phosphorylation sites of Nedd4-2 that potentiate its inhibition of the epithelial Na+ channel

scientific article

Proteome changes in ovarian epithelial cells derived from women with BRCA1 mutations and family histories of cancer

scientific article

Proteomic study identifies proteins involved in brassinosteroid regulation of rice growth

scientific article published on 13 October 2010

Proteomics analysis reveals post-translational mechanisms for cold-induced metabolic changes in Arabidopsis

scientific article

Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE.

scientific article published on 8 January 2008

Quantitative Proteomics Reveals Fundamental Regulatory Differences in Oncogenic HRAS and Isocitrate Dehydrogenase (IDH1) Driven Astrocytoma

scientific article published on 10 November 2016

Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol

scientific article published in February 2005

Quantitative analysis of synaptic phosphorylation and protein expression

scientific article

Quantitative encoding of the effect of a partial agonist on individual opioid receptors by multisite phosphorylation and threshold detection

scientific article published on August 2011

Quantitative profiling of caspase-cleaved substrates reveals different drug-induced and cell-type patterns in apoptosis ⬇️

scientific article published on July 16, 2012

Quantitative proteomic analysis of Huh-7 cells infected with Dengue virus by label-free LC-MS.

scientific article

Signaling to transcription networks in the neuronal retrograde injury response.

scientific article published on 13 July 2010

Substrates of IAP ubiquitin ligases identified with a designed orthogonal E3 ligase, the NEDDylator

scientific article published on 29 November 2012

TAOK2 Kinase Mediates PSD95 Stability and Dendritic Spine Maturation through Septin7 Phosphorylation.

scientific article published on 29 December 2016

The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis

scientific article published on 4 June 2016

The Brassinosteroid-Activated BRI1 Receptor Kinase Is Switched off by Dephosphorylation Mediated by Cytoplasm-Localized PP2A B' Subunits

scientific article published on 27 October 2015

The CDG1 kinase mediates brassinosteroid signal transduction from BRI1 receptor kinase to BSU1 phosphatase and GSK3-like kinase BIN2.

scientific article published on August 2011

The Data Must Be Accessible to All

scientific article published on 18 February 2020

The RasGAP proteins Ira2 and neurofibromin are negatively regulated by Gpb1 in yeast and ETEA in humans

scientific article

The data must be accessible to all

scientific article published on 18 February 2020

The glycine arginine-rich domain of the RNA-binding protein nucleolin regulates its subcellular localization

scientific article published on 13 September 2021

The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry

scientific article

The lineage stability and suppressive program of regulatory T cells require protein O-GlcNAcylation

scientific article published in Nature Communications

The site-specific installation of methyl-lysine analogs into recombinant histones

scientific article published on March 2007

The transcriptional coactivator DRIP/mediator complex is involved in vitamin D receptor function and regulates keratinocyte proliferation and differentiation

scientific article published on 3 June 2010

The urinary proteome in Fanconi syndrome implies specificity in the reabsorption of proteins by renal proximal tubule cells

scientific article

Three mechanisms assemble central nervous system nodes of Ranvier

scientific article published on May 2013

Tpr directly binds to Mad1 and Mad2 and is important for the Mad1-Mad2-mediated mitotic spindle checkpoint

scientific article

Translatome Regulation in Neuronal Injury and Axon Regrowth.

scientific article

Two distinct coactivators, DRIP/mediator and SRC/p160, are differentially involved in vitamin D receptor transactivation during keratinocyte differentiation

scientific article published on 31 July 2003

Ubiquitin-dependent proteasomal degradation of human liver cytochrome P450 2E1: identification of sites targeted for phosphorylation and ubiquitination

scientific article

Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry

scholarly article

Warm ischemia-induced alterations in oxidative and inflammatory proteins in hepatic Kupffer cells in rats

scientific article

αII Spectrin Forms a Periodic Cytoskeleton at the Axon Initial Segment and Is Required for Nervous System Function

scientific article published on 16 October 2017

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