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List of works by Ramana Madupu

A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry ⬇️

scientific article

A catalog of reference genomes from the human microbiome

scientific article

CharProtDB: a database of experimentally characterized protein annotations ⬇️

scientific article published on December 2, 2011

Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus

scientific article

Comparative genomics of emerging human ehrlichiosis agents

scientific article

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

scientific article

Complete Genome Sequence of Mycoplasma bovis Type Strain PG45 (ATCC 25523) ⬇️

scientific article published on December 6, 2010

Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12

scientific article published on 20 February 2014

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

scientific article

Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae

scientific article

Complete genome sequence of the Q-fever pathogen Coxiella burnetii

scientific article

Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum

scientific article

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

scientific article

Complete genome sequences of Mycoplasma leachii strain PG50T and the pathogenic Mycoplasma mycoides subsp. mycoides small colony biotype strain Gladysdale ⬇️

scientific article published on August 1, 2012

Evidence for horizontal gene transfer between Chlamydophila pneumoniae and Chlamydia phage

scientific article

Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178T (Phylum Thermodesulfobacteria)

scientific article

Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae)

scientific article

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

scientific article

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.

scientific article

Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades

scientific article

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

scientific article

Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment

scientific article

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

scientific article

Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

scientific article published on 7 February 2018

Human papillomavirus community in healthy persons, defined by metagenomics analysis of human microbiome project shotgun sequencing data sets

scientific article

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

scientific article

Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901

scientific article

Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species

scientific article published in January 2005

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9

scientific article (publication date: 4 December 2010)

Meeting report: a workshop on Best Practices in Genome Annotation

scientific article

Pathema: a clade-specific bioinformatics resource center for pathogen research

scientific article

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements

scientific article

Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens

scientific article

Structural flexibility in the Burkholderia mallei genome

scientific article

The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts

scientific article

The COMBREX project: design, methodology, and initial results

scientific article

The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data

scientific article

The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms)

scientific article

The complete genome sequence of Haloferax volcanii DS2, a model archaeon

scientific article

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

scientific article

The comprehensive microbial resource

scientific article

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

scientific article

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

scientific article

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

scientific article

Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation

scientific article

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

scientific article

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

scientific article

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

scientific article

Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition

scientific article

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