List of works - Lauren M Brinkac

Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species

scientific article

CharProtDB: a database of experimentally characterized protein annotations ⬇️

scientific article published on December 2, 2011

Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus

scientific article

Comparative genomics of emerging human ehrlichiosis agents

scientific article

Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions

scientific article

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

scientific article

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

scientific article

Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae

scientific article

Complete genome sequence of the Q-fever pathogen Coxiella burnetii

scientific article

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

scientific article

Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms.

scientific article

Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements

scientific article

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents.

scientific article

Draft Genome Sequences of Burkholderia cenocepacia ET12 Lineage Strains K56-2 and BC7.

scientific article

Draft genome sequence determination for cystic fibrosis and chronic granulomatous disease Burkholderia multivorans isolates

scientific article

Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters

scientific article

Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in from Neonates in a Nigerian Hospital

scientific article published in 2019

Erratum: Corrigendum: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

article

GGRaSP: A R-package for selecting representative genomes using Gaussian mixture models

scientific article published on 14 April 2018

Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements ⬇️

scientific article published on July 28, 2010

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics

scientific article published on 3 September 2004

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

scientific article

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

scientific article

Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism

scientific article

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

scientific article

Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment

scientific article

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

scientific article

Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease

scientific article published on May 2017

Identification and taxonomic characterization of Bordetella pseudohinzii sp. nov. isolated from laboratory-raised mice

scientific article

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

scientific article

Integrating the microbiome as a resource in the forensics toolkit

scientific article published on 27 June 2017

LOCUST: a custom sequence locus typer for classifying microbial isolates

scientific article published on 27 January 2017

Large-scale comparative analysis of microbial pan-genomes using PanOCT.

scientific article

Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901

scientific article

MPrESS: An R-Package for Accurately Predicting Power for Comparisons of 16S rRNA Microbiome Taxa Distributions including Simulation by Dirichlet Mixture Modeling

scientific article published in 2023

Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species

scientific article published in January 2005

Meeting report: a workshop on Best Practices in Genome Annotation

scientific article

Multidrug resistant pathogens respond differently to the presence of co-pathogen, commensal, probiotic and host cells.

scientific article published on 5 June 2018

New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information

scientific article

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes.

scientific article

Pathema: a clade-specific bioinformatics resource center for pathogen research

scientific article

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements

scientific article

Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens

scientific article

Standardized metadata for human pathogen/vector genomic sequences

scientific article (publication date: 2014)

Structural flexibility in the Burkholderia mallei genome

scientific article

The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts

scientific article

The Protein Naming Utility: a rules database for protein nomenclature

scientific article

The Threat of Antimicrobial Resistance on the Human Microbiome.

scientific article published on 11 May 2017

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

scientific article

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

scientific article

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

scientific article

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

scientific article

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

scientific article

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

scientific article

Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition

scientific article

List of works by Lauren M Brinkac

Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species

CharProtDB: a database of experimentally characterized protein annotations ⬇️

Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus

Comparative genomics of emerging human ehrlichiosis agents

Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae

Complete genome sequence of the Q-fever pathogen Coxiella burnetii

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms.

Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents.

Draft Genome Sequences of Burkholderia cenocepacia ET12 Lineage Strains K56-2 and BC7.

Draft genome sequence determination for cystic fibrosis and chronic granulomatous disease Burkholderia multivorans isolates

Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters

Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in from Neonates in a Nigerian Hospital

Erratum: Corrigendum: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

GGRaSP: A R-package for selecting representative genomes using Gaussian mixture models

Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements ⬇️

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease

Identification and taxonomic characterization of Bordetella pseudohinzii sp. nov. isolated from laboratory-raised mice

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

Integrating the microbiome as a resource in the forensics toolkit

LOCUST: a custom sequence locus typer for classifying microbial isolates

Large-scale comparative analysis of microbial pan-genomes using PanOCT.

Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901

MPrESS: An R-Package for Accurately Predicting Power for Comparisons of 16S rRNA Microbiome Taxa Distributions including Simulation by Dirichlet Mixture Modeling

Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species

Meeting report: a workshop on Best Practices in Genome Annotation

Multidrug resistant pathogens respond differently to the presence of co-pathogen, commensal, probiotic and host cells.

New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes.

Pathema: a clade-specific bioinformatics resource center for pathogen research

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements

Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens

Standardized metadata for human pathogen/vector genomic sequences

Structural flexibility in the Burkholderia mallei genome

The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts

The Protein Naming Utility: a rules database for protein nomenclature

The Threat of Antimicrobial Resistance on the Human Microbiome.

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition