Search filters

List of works by Daniel H Haft

A comparison of methanobactins from Methylosinus trichosporium OB3b and Methylocystis strain Sb2 predicts methanobactins are synthesized from diverse peptide precursors modified to create a common core for binding and reducing copper ions

scientific article

A comprehensive software suite for protein family construction and functional site prediction

scientific article

A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

scientific article published on 11 November 2005

A strain-variable bacteriocin in Bacillus anthracis and Bacillus cereus with repeated Cys-Xaa-Xaa motifs

scientific article published on 21 April 2009

An updated evolutionary classification of CRISPR-Cas systems

scientific article

AntiFam: a tool to help identify spurious ORFs in protein annotation

scientific article published on 20 March 2012

Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification

scientific article

Bioinformatic evidence for a widely distributed, ribosomally produced electron carrier precursor, its maturation proteins, and its nicotinoprotein redox partners ⬇️

scientific article published on January 11, 2011

Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification

scientific article

Both widespread PEP-CTERM proteins and exopolysaccharides are required for floc formation of Zoogloea resiniphila and other activated sludge bacteria

scientific article published on 23 February 2018

Cell contact-dependent outer membrane exchange in myxobacteria: genetic determinants and mechanism

scientific article

CharProtDB: a database of experimentally characterized protein annotations ⬇️

scientific article published on December 2, 2011

Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus

scientific article

Comparative genomics of emerging human ehrlichiosis agents

scientific article

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

scientific article

Complete Genome Sequence of the Oral Pathogenic Bacterium Porphyromonas gingivalis Strain W83.

scientific article published in January 2004

Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83

scientific article

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents.

scientific article

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

scientific article

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

scientific article

Erratum for "New Insights into Dissemination and Variation of the Health Care-Associated Pathogen Acinetobacter baumannii from Genomic Analysis".

scientific article published on 4 June 2015

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

scientific article

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants

scientific article published on 19 December 2019

Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic

scientific article

Expansion of ribosomally produced natural products: a nitrile hydratase- and Nif11-related precursor family

scientific article

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics

scientific article published on 3 September 2004

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

scientific article

Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades

scientific article

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

scientific article

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

scientific article

Genome sequence of the human malaria parasite Plasmodium falciparum

scientific article

GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease

scientific article

HMM-based databases in InterPro

scientific article published in January 2002

Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis

scientific article published on January 2013

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

scientific article

InterPro in 2011: new developments in the family and domain prediction database

scientific article

InterPro in 2011: new developments in the family and domain prediction database

scientific article published on 19 May 2012

InterPro, progress and status in 2005

scientific article

InterPro: an integrated documentation resource for protein families, domains and functional sites

scientific article

InterPro: the integrative protein signature database

scientific article

Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901

scientific article

Methanobactin and MmoD work in concert to act as the 'copper-switch' in methanotrophs

scientific article

Modes of particle transport

scientific article published in Nature

Mycofactocin-associated mycobacterial dehydrogenases with non-exchangeable NAD cofactors

scientific article published on 25 January 2017

New developments in the InterPro database

scientific article

New insights into dissemination and variation of the health care-associated pathogen Acinetobacter baumannii from genomic analysis

scientific article published on 21 January 2014

Orphan SelD proteins and selenium-dependent molybdenum hydroxylases

scientific article published on 20 February 2008

Pathogenomic inference of virulence-associated genes in Leptospira interrogans

scientific article

ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process ⬇️

scientific article published on November 9, 2011

RefSeq: an update on prokaryotic genome annotation and curation

scientific article published on 3 November 2017

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

scientific article

Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature

scientific article

SMURF: Genomic mapping of fungal secondary metabolite clusters

scientific article published on 8 June 2010

Simultaneous non-contiguous deletions using large synthetic DNA and site-specific recombinases

scientific article

Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function

scientific article

Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens

scientific article

Structural flexibility in the Burkholderia mallei genome

scientific article

TIGRFAMs and Genome Properties in 2013.

scientific article

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes

scientific article

The COMBREX project: design, methodology, and initial results

scientific article

The InterPro database, 2003 brings increased coverage and new features

scientific article (publication date: 2003)

The InterPro protein families database: the classification resource after 15 years

scientific article

The TIGRFAMs database of protein families

scientific article

The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

scientific article

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

scientific article

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

scientific article

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

scientific article

The minimum information about a genome sequence (MIGS) specification

scientific article

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

scientific article

Unexpected abundance of coenzyme F(420)-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria

scientific article

Using comparative genomics to drive new discoveries in microbiology

scientific article

What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira

scientific article published on 18 February 2016

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

scientific article

Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition

scientific article

Paulina is supported by:

About Paulina

Help