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List of works by Steven E. Brenner

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WebLogo: A Sequence Logo Generator

scientific article (publication date: June 2004)
The Bioperl toolkit: Perl modules for the life sciences

scientific article
The developmental transcriptome of Drosophila melanogaster

scientific article (publication date: 24 March 2011)
Identification of functional elements and regulatory circuits by Drosophila modENCODE

scientific article (publication date: 24 December 2010)
Data growth and its impact on the SCOP database: new developments

scientific article (publication date: 2008)
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

scientific article (publication date: 7 January 2003)
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

scientific article published in March 2007
SCOP database in 2004: refinements integrate structure and sequence family data

scientific article (publication date: 2004)
A large-scale evaluation of computational protein function prediction

scientific article
Biases in Illumina transcriptome sequencing caused by random hexamer priming

scientific article
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements

scientific article published on 14 March 2007
The ASTRAL Compendium in 2004

scientific article
SCOP database in 2002: refinements accommodate structural genomics

scientific article published on January 1, 2002
Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported

scientific journal article
SCOPe: Structural Classification of Proteins--extended, integrating SCOP and ASTRAL data and classification of new structures

scientific article
The evolving roles of alternative splicing

scientific article published on June 2004
The impact of structural genomics: expectations and outcomes

scientific article
Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

scientific article
Comparative analysis of the transcriptome across distant species

scientific article
Conservation of an RNA regulatory map between Drosophila and mammals

scientific article
An unappreciated role for RNA surveillance

scientific article published in 2004
The coupling of alternative splicing and nonsense-mediated mRNA decay.

scientific article published on January 2007
Protein molecular function prediction by Bayesian phylogenomics

scientific article
Comparative analysis of regulatory information and circuits across distant species

scientific article
RNA structural motifs: building blocks of a modular biomolecule

scientific article published on August 2005
Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions

scientific journal article
Sulfotransferases and sulfatases in mycobacteria

scientific article
An expanded evaluation of protein function prediction methods shows an improvement in accuracy

scientific article
Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes

scientific article
Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila

scientific article
Population statistics of protein structures: lessons from structural classifications

scientific article published on June 1997
SCOR: a Structural Classification of RNA database

scientific article published on January 1, 2002
Outcome of a workshop on applications of protein models in biomedical research

scientific article (publication date: 13 February 2009)
Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila

scientific article
Expectations from structural genomics

scientific article
SCOR: Structural Classification of RNA, version 2.0.

scientific article
Distribution of protein folds in the three superkingdoms of life.

scientific article
Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members

scientific article published on February 2009
A tour of structural genomics

scientific article
ASTRAL compendium enhancements

scientific article
Target selection for structural genomics

scientific article
Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data

scientific article
Regulation of Splicing Factors by Alternative Splicing and NMD Is Conserved between Kingdoms Yet Evolutionarily Flexible

scientific article published on January 8, 2015
Gene duplications in H. influenzae

scientific article published in November 1995
Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns

scientific article
Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs.

scientific article published in June 2004
DNA recognition code of transcription factors

scientific article
The COMBREX project: design, methodology, and initial results

scientific article
Newborn Sequencing in Genomic Medicine and Public Health

scientific article
Association of gut microbiota with post-operative clinical course in Crohn's disease

scientific article

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