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List of works by Özlem Uzuner

2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text

scientific article

2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records

scientific article published on 01 January 2020

A cascade of classifiers for extracting medication information from discharge summaries

scientific article

A de-identifier for medical discharge summaries

scientific article published on 28 November 2007

A natural language processing challenge for clinical records: Research Domains Criteria (RDoC) for psychiatry

scientific article

A systematic comparison of feature space effects on disease classifier performance for phenotype identification of five diseases

scientific article published on August 2015

Advancing the State of the Art in Clinical Natural Language Processing through Shared Tasks

scientific article published on 29 August 2018

Advancing the state of the art in automatic extraction of adverse drug events from narratives

scientific article published on 01 January 2020

Adverse drug event detection using reason assignments in FDA drug labels

scientific article published on 02 September 2020

An Empirical Test of GRUs and Deep Contextualized Word Representations on De-Identification

scientific article published on 01 August 2019

An Exploratory Study on Pseudo-Data Generation in Prescription and Adverse Drug Reaction Extraction

scientific article published on 01 August 2019

Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus

scientific article published on 28 August 2015

Annotating risk factors for heart disease in clinical narratives for diabetic patients

scientific article published on 21 May 2015

Annotating temporal information in clinical narratives

scientific article published on 19 July 2013

Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1

scientific article

Automatic prediction of coronary artery disease from clinical narratives

scientific article published on 26 June 2017

Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations

scientific article published on 02 May 2017

Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations

scientific article

Challenges in Synthesizing Surrogate PHI in Narrative EMRs

Chronology of your health events: approaches to extracting temporal relations from medical narratives

scientific article

Cohort selection for clinical trials: n2c2 2018 shared task track 1

scientific article published on 01 November 2019

Community annotation experiment for ground truth generation for the i2b2 medication challenge

scientific article published on September 2010

Corrigendum to "Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2" [J Biomed Inform. 2017 Nov;75S:S62-S70]

scientific article published on 01 September 2018

Creation of a new longitudinal corpus of clinical narratives

scientific article published on 30 September 2015

De-identification of patient notes with recurrent neural networks

scientific article published on 30 December 2016

De-identification of psychiatric intake records: Overview of 2016 CEGS N-GRID shared tasks Track 1.

scientific article

Ease of adoption of clinical natural language processing software: An evaluation of five systems

scientific article

Editorial: The second international workshop on health natural language processing (HealthNLP 2019)

scientific article published on 05 December 2019

Emerging clinical applications of text analytics

scientific article published on 20 September 2019

Evaluating temporal relations in clinical text: 2012 i2b2 Challenge

scientific article (publication date: 2013)

Evaluating the state of the art in coreference resolution for electronic medical records

scientific article (publication date: 2012)

Evaluating the state-of-the-art in automatic de-identification

scientific article

Extracting medication information from clinical text

scientific article

Extraction and Analysis of Clinically Important Follow-up Recommendations in a Large Radiology Dataset

scientific article published on 30 May 2020

FABLE: A Semi-Supervised Prescription Information Extraction System

scientific article published on 05 December 2018

Family History Extraction From Synthetic Clinical Narratives Using Natural Language Processing: Overview and Evaluation of a Challenge Data Set and Solutions for the 2019 National NLP Clinical Challenges (n2c2)/Open Health Natural Language Processin

scientific article published in 2021

Identifying patient smoking status from medical discharge records

scientific article published on 18 October 2007

MCORES: a system for noun phrase coreference resolution for clinical records

scientific article

Machine learning and rule-based approaches to assertion classification

scientific article published on 24 October 2008

New approaches to cohort selection

scientific article published on 01 November 2019

Normalization of relative and incomplete temporal expressions in clinical narratives

scientific article

Normalizing Adverse Events using Recurrent Neural Networks with Attention

scientific article published on 30 May 2020

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions

scientific article published on September 2011

Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks

scientific article published on 24 October 2015

Prescription extraction using CRFs and word embeddings.

scientific article published on 3 July 2017

Qualitative analysis of workflow modifications used to generate the reference standard for the 2010 i2b2/VA challenge ⬇️

scientific article published on October 22, 2011

Recognizing obesity and comorbidities in sparse data

scientific article

Second i2b2 workshop on natural language processing challenges for clinical records

scientific article

Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes.

scientific article published on 31 August 2017

Semantic relations for problem-oriented medical records

scientific article

Semi-Supervised Learning to Identify UMLS Semantic Relations

scientific article published on 07 April 2014

Sentiment Analysis of Suicide Notes: A Shared Task ⬇️

scientific article published on January 30, 2012

Specializing for predicting obesity and its co-morbidities

scientific article published on 11 November 2008

Subgraph augmented non-negative tensor factorization (SANTF) for modeling clinical narrative text

scientific article published on 09 April 2015

Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2.

scientific article published on 25 April 2017

Syntactically-informed semantic category recognition in discharge summaries

scientific article published on January 2006

Temporal reasoning over clinical text: the state of the art

scientific article published on 15 May 2013

The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records

scientific article published on 24 September 2020

The 2019 n2c2/OHNLP Track on Clinical Semantic Textual Similarity: Overview

scientific article published on 27 November 2020

Three approaches to automatic assignment of ICD-9-CM codes to radiology reports.

scientific article published on 11 October 2007

Transferability of neural network clinical deidentification systems

scientific article published on 29 September 2021

Two approaches to assertion classification

scientific article published on 6 November 2008

Word sense disambiguation in the clinical domain: a comparison of knowledge-rich and knowledge-poor unsupervised methods

scientific article

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