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List of works by Kazuho Ikeo

A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses

scientific article

A novel association between core mutations in hepatitis B virus genotype F1b and hepatocellular carcinoma in Alaskan Native People.

scientific article

A web-based interactive developmental table for the ascidian Ciona intestinalis, including 3D real-image embryo reconstructions: I. From fertilized egg to hatching larva

scientific article published in July 2007

Accelerated pseudogenization on the neo-X chromosome in Drosophila miranda

scientific article

Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres

scientific article

Aging of spermatogonial stem cells by Jnk-mediated glycolysis activation

scientific article published on 29 July 2019

An evolutionary origin and selection process of goldfish

scientific article

Autosomal recessive cone-rod dystrophy associated with compound heterozygous mutations in the EYS gene

scientific article published on 21 March 2014

Basin-scale seasonal changes in marine free-living bacterioplankton community in the Ofunato Bay

article

Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies

scientific article

Bone Marrow Adipocytes Facilitate Fatty Acid Oxidation Activating AMPK and a Transcriptional Network Supporting Survival of Acute Monocytic Leukemia Cells

scientific article published on 20 January 2017

CCT2 Mutations Evoke Leber Congenital Amaurosis due to Chaperone Complex Instability

scientific article published on 20 September 2016

CIBEX: center for information biology gene expression database

scientific article published on October 2003

Chromosome engineering allows the efficient isolation of vertebrate neocentromeres.

scientific article

Cilium evolution: identification of a novel protein, nematocilin, in the mechanosensory cilium of Hydra nematocytes

scientific article published on 17 July 2008

Cloning and functional analysis of ascidian Mitf in vivo: insights into the origin of vertebrate pigment cells

scientific article published in December 2003

Coevolution of axon guidance molecule Slit and its receptor Robo

scientific article

Collagen adhesion gene is associated with bloodstream infections caused by methicillin-resistant Staphylococcus aureus

scientific article published on 15 November 2019

Comparative analysis of gene expression for convergent evolution of camera eye between octopus and human

scientific article

Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens

scientific article

Comparative genome analyses of nervous system-specific genes

scientific article published on 20 December 2005

Comparative miRNAs analysis of Two contrasting broccoli inbred lines with divergent head-forming capacity under temperature stress

scientific article published in December 2015

Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence

scientific article (publication date: 24 June 2003)

Comparison of gene expression profile of epiretinal membranes obtained from eyes with proliferative vitreoretinopathy to that of secondary epiretinal membranes

scientific article

Compensatory change of interacting amino acids in the coevolution of transcriptional coactivator MBF1 and TATA-box-binding protein

scientific article published on 17 April 2007

Comprehensive single-cell transcriptome analysis reveals heterogeneity in endometrioid adenocarcinoma tissues

scientific article published on 27 October 2017

Congenital Achromatopsia and Macular Atrophy Caused by a Novel Recessive PDE6C Mutation (p.E591K).

scientific article published on 21 January 2015

Constitutive centromere-associated network controls centromere drift in vertebrate cells.

scientific article published on 09 December 2016

Construction of complete Tupaia belangeri transcriptome database by whole-genome and comprehensive RNA sequencing

scientific article published on 26 August 2019

Correction: Comparison of Gene Expression Profile of Epiretinal Membranes Obtained from Eyes with Proliferative Vitreoretinopathy to That of Secondary Epiretinal Membranes

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

scientific article published on 8 January 2007

DDBJ dealing with mass data produced by the second generation sequencer

scientific article

DNA Methylome Analysis Identifies Transcription Factor-Based Epigenomic Signatures of Multilineage Competence in Neural Stem/Progenitor Cells

scientific article published in September 2017

Degeneration after sexual differentiation in hydra and its relevance to the evolution of aging

scientific article

Detection of apoptosis during planarian regeneration by the expression of apoptosis-related genes and TUNEL assay

scientific article

Development of a spot reliability evaluation score for DNA microarrays

scientific article

Different Endosymbiotic Interactions in Two Hydra Species Reflect the Evolutionary History of Endosymbiosis

scientific article published on 19 June 2016

Dissecting planarian central nervous system regeneration by the expression of neural-specific genes

scientific article published in April 2002

Distribution and structural diversity of cilia in tadpole larvae of the ascidian Ciona intestinalis

scientific article published on 14 October 2009

Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition

scientific article published on 24 August 2016

Effective gene collection from the metatranscriptome of marine microorganisms ⬇️

scientific article published on November 30, 2011

Efficient screening of long terminal repeat retrotransposons that show high insertion polymorphism via high-throughput sequencing of the primer binding site

scientific article

Establishment of homozygous knock-out sea urchins

scientific article published on 01 May 2020

Estimation of ancestral gene set of bilaterian animals and its implication to dynamic change of gene content in bilaterian evolution

scientific article

Eukaryotic nuclear structure explains the evolutionary rate difference of ribosome export factors

scientific article

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees

scientific article

Evolution of metabolic networks by gain and loss of enzymatic reaction in eukaryotes

scientific article published on 15 December 2005

Evolutionarily conserved transcription factor Apontic controls the G1/S progression by inducing cyclin E during eye development

scientific article

Evolutionary Transitions of MicroRNA-Target Pairs

scientific article

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna

scientific article published on 18 June 2013

Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus

scientific article (publication date: 24 June 2011)

Evolutionary origin of sex-related genes in the mouse brain

scientific article published on 17 July 2007

Evolutionary origin of the vertebrate blood complement and coagulation systems inferred from liver EST analysis of lamprey

scientific article published in January 2009

Evolutionary pattern of gene homogenization between primate-specific paralogs after human and macaque speciation using the 4-2-4 method

scientific article published on 29 April 2010

Evolutionary patterns of recently emerged animal duplogs

scientific article

Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level

scientific article

FGFR-related gene nou-darake restricts brain tissues to the head region of planarians

scientific article published in October 2002

Function and evolutionary origin of unicellular camera-type eye structure

scientific article published in 2015

Gene dosage imbalance of human chromosome 21 in mouse embryonic stem cells differentiating to neurons

scientific article published on 27 April 2011

Gene expression profile of fibrovascular membranes from patients with proliferative diabetic retinopathy

scientific article

Gene-by-Gene or Localized Dosage Compensation on the Neo-X Chromosome in Drosophila miranda

scientific article published on 01 August 2018

Genome and transcriptome analysis of the food-yeast Candida utilis

scientific article (publication date: 2012)

Genome-Wide Association Study Identifies TLL1 Variant Associated With Development of Hepatocellular Carcinoma After Eradication of Hepatitis C Virus Infection

scientific article

Genome-Wide Association Study Identifies ZNF354C Variants Associated with Depression from Interferon-Based Therapy for Chronic Hepatitis C.

scientific article

Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans

scientific article published on 24 October 2020

HJURP is involved in the expansion of centromeric chromatin

scientific article

HOX genes in the sepiolid squid Euprymna scolopes: implications for the evolution of complex body plans

scientific article published on 12 February 2002

Histone H4 Lys 20 monomethylation of the CENP-A nucleosome is essential for kinetochore assembly

scientific article

HpBase: A genome database of a sea urchin, Hemicentrotus pulcherrimus

scientific article published on 13 March 2018

Human genome network platform: a resource for TFRN analysis

scientific article published in January 2014

Identification of Novel Mutations in the LRR-Cap Domain of C21orf2 in Japanese Patients With Retinitis Pigmentosa and Cone-Rod Dystrophy

scientific article published on August 2016

Induction of a noggin-like gene by ectopic DV interaction during planarian regeneration

scientific article published in October 2002

Inhibition of BCL2A1 by STAT5 inactivation overcomes resistance to targeted therapies of FLT3-ITD/D835 mutant AML

scientific article published on 01 February 2022

Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like

scientific article published in January 2008

Integrated database (2): Data oriented approach to genome network informatics

scientific article

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

Japanese domesticated chickens have been derived from Shamo traditional fighting cocks

scientific article published on 01 October 2004

Lack of interleukin-6 in the tumor microenvironment augments type-1 immunity and increases the efficacy of cancer immunotherapy.

scientific article

Longitudinal clinical course of three Japanese patients with Leber congenital amaurosis/early-onset retinal dystrophy with RDH12 mutation

scientific article published on 22 April 2014

Maser: one-stop platform for NGS big data from analysis to visualization

scientific article published in January 2018

Metagenome-based diversity analyses suggest a strong locality signal for bacterial communities associated with oyster aquaculture farms in Ofunato Bay

article

Metatranscriptomic Analysis of Corals Inoculated With Tolerant and Non-Tolerant Symbiont Exposed to High Temperature and Light Stress

scientific article published on 11 April 2022

Molecular Cloning of Secreted Luciferases from Marine Planktonic Copepods

scientific article

Molecular hierarchy in neurons differentiated from mouse ES cells containing a single human chromosome 21.

scientific article

Molecular phylogeny of ten intertidal hermit crabs of the genus Pagurus inferred from multiple mitochondrial genes, with special emphasis on the evolutionary relationship of Pagurus lanuginosus and Pagurus maculosus

article

Nematogalectin, a nematocyst protein with GlyXY and galectin domains, demonstrates nematocyte-specific alternative splicing in Hydra

scientific article

Novel C8orf37 Mutations in Patients with Early-onset Retinal Dystrophy, Macular Atrophy, Cataracts, and High Myopia

scientific article published on 12 August 2014

Novel nonsense and splice site mutations in CRB1 gene in two Japanese patients with early-onset retinal dystrophy

scientific article published on 17 October 2014

Optimized ancestral state reconstruction using Sankoff parsimony

scientific article

Origin and evolutionary process of the CNS elucidated by comparative genomics analysis of planarian ESTs

scientific article published on 24 June 2003

Pigment cell lineage-specific expression activity of the ascidian tyrosinase-related gene

scientific article

Pirfenidone attenuates lung fibrotic fibroblast responses to transforming growth factor-β1

scientific article published on 11 June 2019

Prediction of the prototype of the human Toll-like receptor gene family from the pufferfish, Fugu rubripes, genome

scientific article published on 15 January 2003

RHO Mutations (p.W126L and p.A346P) in Two Japanese Families with Autosomal Dominant Retinitis Pigmentosa.

scientific article

RPE65 Mutations in Two Japanese Families with Leber Congenital Amaurosis

scientific article published on 12 December 2014

Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity

scientific article

Reduced rod electroretinograms in carrier parents of two Japanese siblings with autosomal recessive retinitis pigmentosa associated with PDE6B gene mutations

scientific article published in April 2015

Search for the evolutionary origin of a brain: planarian brain characterized by microarray

scientific article published on 2 April 2003

Seasonal and annual changes in the microbial communities of Ofunato Bay, Japan, based on metagenomics

scientific article published on 26 August 2021

Seasonal changes in the abundance of bacterial genes related to dimethylsulfoniopropionate catabolism in seawater from Ofunato Bay revealed by metagenomic analysis

article

Seasonal changes in the communities of photosynthetic picoeukaryotes in Ofunato Bay as revealed by shotgun metagenomic sequencing

article

Specific Features of Fibrotic Lung Fibroblasts Highly Sensitive to Fibrotic Processes Mediated via TGF-β-ERK5 Interaction

scientific article published on 01 January 2019

Specific expression of Gsta4 in mouse cochlear melanocytes: a novel role for hearing and melanocyte differentiation

scientific article

Standardization of microarray experiment data

scientific article

Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region

scientific article

Taxonomic profiles in metagenomic analyses of free-living microbial communities in the Ofunato Bay

article

The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis) ⬇️

scientific article published on March 11, 2013

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

scientific article

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms

scientific article

The Rice Annotation Project Database (RAP-DB): 2008 update

scientific article

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information

scientific article

The Scaly-foot Snail genome and implications for the origins of biomineralised armour

scientific article published on 08 April 2020

The dynamic genome of Hydra

scientific article

The evolutionary emergence of cell type-specific genes inferred from the gene expression analysis of Hydra

scholarly article

The evolutionary origin of long-crowing chicken: its evolutionary relationship with fighting cocks disclosed by the mtDNA sequence analysis

scientific article

The evolutionary position of nematodes

scientific article published on 8 April 2002

The evolutionary relationship between gene duplication and alternative splicing

scientific article published on 12 September 2008

The evolutionary study of small RNA-directed gene silencing pathways by investigating RNase III enzymes

scientific article published on 31 January 2009

The expression of neural-specific genes reveals the structural and molecular complexity of the planarian central nervous system

scientific article

The genome stability in Corynebacterium species due to lack of the recombinational repair system ⬇️

scientific article published on October 23, 2003

The increased frequency of methicillin-resistant Staphylococcus aureus with low MIC of beta-lactam antibiotics isolated from hospitalized patients

scientific article published on 21 February 2020

The origin of nucleus: rebuild from the prokaryotic ancestors of ribosome export factors

scientific article published on 21 June 2008

The reduction of miR146b-5p in monocytes and T cells could contribute to the immunopathogenesis of hepatitis C virus infection

scientific article published on 16 September 2019

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Tissue- and stage-dependent dosage compensation on the neo-X chromosome in Drosophila pseudoobscura

scientific article published on 3 December 2013

Transcriptional interferences in cis natural antisense transcripts of humans and mice

scientific article

Transcriptomic changes with increasing algal symbiont reveal the detailed process underlying establishment of coral-algal symbiosis

scientific article published in Scientific Reports

Two-step evolution of endosymbiosis between hydra and algae

scientific article

Usage of the Sea Urchin Hemicentrotus pulcherrimus Database, HpBase

scientific article published on 01 January 2021

VaProS: a database-integration approach for protein/genome information retrieval

scientific article published on 23 December 2016

Where is the origin of the Japanese gamecocks?

scientific article published in October 2003

Whole exome analysis identifies frequent CNGA1 mutations in Japanese population with autosomal recessive retinitis pigmentosa

scientific article

Whole-exome sequencing identifies a novel ALMS1 mutation (p.Q2051X) in two Japanese brothers with Alström syndrome

scientific article

[Genome network]

scientific article published on 01 July 2005

[Integrated database (2): Integrated database for the Genome Network Project]

scientific article published on 01 December 2004

[International public gene expression database (CIBEX) and data submission].

scientific article

magp4 gene may contribute to the diversification of cichlid morphs and their speciation

scientific article published on 6 March 2006

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