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List of works by Daniel L Halligan

Analysis and implications of mutational variation.

scientific article published on 29 July 2008

Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements

scientific article

Assessing Recent Selection and Functionality at Long Noncoding RNA Loci in the Mouse Genome

scientific article

Comprehensive Profiling of Poor-Risk Paired Primary and Recurrent Triple-Negative Breast Cancers Reveals Immune Phenotype Shifts

scientific article published on 14 October 2019

Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents

scientific article

Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes.

scientific article published in January 2010

Dominance and overdominance of mildly deleterious induced mutations for fitness traits in Caenorhabditis elegans.

scientific article

Effect of divergence time and recombination rate on molecular evolution of Drosophila INE-1 transposable elements and other candidates for neutrally evolving sites.

scientific article published on 25 September 2007

Estimating numbers of EMS-induced mutations affecting life history traits in Caenorhabditis elegans in crosses between inbred sublines

scientific article published on 01 December 2003

Estimation of the spontaneous mutation rate per nucleotide site in a Drosophila melanogaster full-sib family.

scientific article

Evidence for pervasive adaptive protein evolution in wild mice

scientific article

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Evolutionary constraints in conserved nongenic sequences of mammals.

scientific article published on October 2005

Faster-X adaptive protein evolution in house mice.

scientific article published on 20 December 2013

How many lethal alleles?

scientific article

Inference of Mutation Parameters and Selective Constraint in Mammalian Coding Sequences by Approximate Bayesian Computation ⬇️

scientific article published on February 1, 2011

Inference of Site Frequency Spectra From High-Throughput Sequence Data: Quantification of Selection on Nonsynonymous and Synonymous Sites in Humans ⬇️

scientific article published on May 19, 2011

Natural selection drives extremely rapid evolution in antiviral RNAi genes.

scientific article

Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila.

scientific article

Positive and negative selection in murine ultraconserved noncoding elements

scientific article published on 08 April 2011

Positive and negative selection on noncoding DNA close to protein-coding genes in wild house mice.

scientific article published on 8 November 2010

Processing genome scale tabular data with wormtable

scientific article

Recent Evolution in Rattus norvegicus Is Shaped by Declining Effective Population Size

scientific article

Species-specific regulation of angiogenesis by glucocorticoids reveals contrasting effects on inflammatory and angiogenic pathways

scientific article published on 15 February 2018

Survival prediction in mesothelioma using a scalable Lasso regression model: instructions for use and initial performance using clinical predictors.

scientific article published on 30 January 2018

TGFβ attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells.

scientific article published on 14 February 2018

Tumor Fusion Burden as a hallmark of immune infiltration in prostate cancer

scientific article published on 22 April 2020

Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison

scientific article

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