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List of works by Tsuyoshi Sekizuka

1201. A Prolonged Multispecies Outbreak of Carbapenemase-Producing Enterobacteriaceae Due to Transmissible Plasmid With Carbapenemase Gene

article

2051. Detection of Candida auris Among Previously Unidentified Yeasts Isolated from Ear Discharge Specimens in Japan

A CRISPR Screen Identifies LAPTM4A and TM9SF Proteins as Glycolipid-Regulating Factors

scientific article published on 03 January 2019

A CRISPR Screen Using Subtilase Cytotoxin Identifies SLC39A9 as a Glycan-Regulating Factor

scientific article published on 08 May 2019

A Geographically Widespread Outbreak Investigation and Development of a Rapid Screening Method Using Whole Genome Sequences of Enterohemorrhagic Escherichia coli O121.

scientific article

A food-borne outbreak of gastroenteritis due to genotype G1P[8] rotavirus among adolescents in Japan.

scientific article published on September 2014

A lethal mouse model for evaluating vaccine-associated enhanced respiratory disease during SARS-CoV-2 infection

scientific article published on 07 January 2022

A mutant H3N2 influenza virus uses an alternative activation mechanism in TMPRSS2 knockout mice by loss of an oligosaccharide in the hemagglutinin stalk region

scientific article

A newly constructed primer pair for the PCR amplification, cloning and sequencing of the flagellin (flaA) gene from isolatesof urease-negative Campylobacter lari.

scientific article published on August 2005

A proposal of alternative primers for the ARTIC Network's multiplex PCR to improve coverage of SARS-CoV-2 genome sequencing

scientific article (preprint)

AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica.

scientific article published on 19 March 2018

Amoebal endosymbiont Neochlamydia genome sequence illuminates the bacterial role in the defense of the host amoebae against Legionella pneumophila

scientific article

Analysis of multidrug resistant group B streptococci with reduced penicillin susceptibility forming small, less hemolytic colonies.

scientific article published on 17 August 2017

Aseptic meningitis caused by torque teno virus in an infant: a case report

scientific article published on 24 September 2019

Campylobacter lari: molecular and comparative analyses of the virulence-associated chromosome locus J (vacJ) gene homologue, including the promoter region.

scientific article published in January 2009

Canine distemper virus with the intact C protein has the potential to replicate in human epithelial cells by using human nectin4 as a receptor.

scientific article published on 19 November 2012

Capsule Switching and Antimicrobial Resistance Acquired during Repeated Streptococcus pneumoniae Pneumonia Episodes

scientific article

Characteristic mutations found in the ML0411 gene of Mycobacterium leprae isolated in Northeast Asian countries ⬇️

scientific article published on July 24, 2013

Characterization of Antimicrobial Resistance Dissemination across Plasmid Communities Classified by Network Analysis

scientific article

Characterization of Fusobacterium varium Fv113-g1 isolated from a patient with ulcerative colitis based on complete genome sequence and transcriptome analysis

scientific article published on 7 December 2017

Characterization of NDM-5- and CTX-M-55-coproducing Escherichia coli GSH8M-2 isolated from the effluent of a wastewater treatment plant in Tokyo Bay

scientific article published on 23 July 2019

Characterization of Salmonella enterica serovar Typhimurium isolates harboring a chromosomally encoded CMY-2 beta-lactamase gene located on a multidrug resistance genomic island.

scientific article

Characterization of blaTEM-52-carrying plasmids of extended-spectrum-β-lactamase-producing Salmonella enterica isolates from chicken meat with a common supplier in Japan

scientific article

Characterization of quasispecies of pandemic 2009 influenza A virus (A/H1N1/2009) by de novo sequencing using a next-generation DNA sequencer.

scientific article

Characterization of the Pathogenicity of Streptococcus intermedius TYG1620 Isolated from a Human Brain Abscess Based on the Complete Genome Sequence with Transcriptome Analysis and Transposon Mutagenesis in a Murine Subcutaneous Abscess Model

scientific article

Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis

scientific article

Clade II Candida auris possess genomic structural variations related to an ancestral strain

scientific article published on 09 October 2019

Cloning and structural analysis of the full-length cytolethal distending toxin (cdt) gene operon from Campylobacter lari.

scientific article published in January 2008

Cloning, sequencing and expression of full-length Campylobacter invasion antigen B gene operon from Campylobacter lari.

scientific article

Cloning, sequencing and molecular characterisation of a cryptic plasmid from a urease-positive thermophilic Campylobacter (UPTC) isolate.

scientific article published on January 2007

Comparative genome analysis of VSP-II and SNPs reveals heterogenic variation in contemporary strains of Vibrio cholerae O1 isolated from cholera patients in Kolkata, India.

scientific article

Complete Genome Sequence and Characterization of Linezolid-Resistant Clinical Isolate KUB3006 Carrying a (B)-Transposon on Its Chromosome and -Plasmid

scientific article published on 25 October 2018

Complete Genome Sequence of -Positive sp. MRY16-398 Isolate From the Ascites of a Diverticulitis Patient

scientific article published on 22 November 2018

Complete Genome Sequence of a -Positive Klebsiella pneumoniae Strain Isolated from the Effluent of an Urban Sewage Treatment Plant in Japan

article

Complete Genome Sequence of a Novel GV.2 Sapovirus Strain, NGY-1, Detected from a Suspected Foodborne Gastroenteritis Outbreak

scientific article

Complete Genome Sequence of an Enterohemorrhagic Escherichia coli O111:H8 Strain Recovered from a Large Outbreak in Japan Associated with Consumption of Raw Beef

scientific article published on 03 October 2019

Complete Genome Sequences of the p1 Gene Type 2b and 2c Strains Mycoplasma pneumoniae KCH-402 and KCH-405.

scientific article

Complete genome sequence and comparative genomic analysis of Mycobacterium massiliense JCM 15300 in the Mycobacterium abscessus group reveal a conserved genomic island MmGI-1 related to putative lipid metabolism

scientific article

Comprehensive Diagnosis of Bacterial Infection Associated with Acute Cholecystitis Using Metagenomic Approach

scientific article

Comprehensive pathogen detection associated with four recurrent episodes of Kawasaki disease in a patient during a single year using next-generation sequencing.

scientific article published on February 2016

Comprehensive phylogenomic analysis reveals a novel cluster of simian endogenous retroviral sequences in Colobinae monkeys

scientific article published on 12 June 2018

Conventional culture methods with commercially available media unveil the presence of novel culturable bacteria

scientific article published on 17 August 2018

Correction for Rimbara et al., Draft Genome Sequence of Helicobacter fennelliae Strain MRY12-0050, Isolated from a Bacteremia Patient

scientific article published on 21 July 2016

Correction: Genetic Variation of Human Papillomavirus Type 16 in Individual Clinical Specimens Revealed by Deep Sequencing.

scientific article published on 16 January 2014

Corynebacterium ulcerans 0102 carries the gene encoding diphtheria toxin on a prophage different from the C. diphtheriae NCTC 13129 prophage.

scientific article

Decrease in the prevalence of extended-spectrum cephalosporin-resistant Salmonella following cessation of ceftiofur use by the Japanese poultry industry.

scientific article

Deep-Sequence Identification and Role in Virus Replication of a JC Virus Quasispecies in Patients with Progressive Multifocal Leukoencephalopathy.

scientific article published on 19 October 2016

Detection of a possible bioterrorism agent, Francisella sp., in a clinical specimen by use of next-generation direct DNA sequencing

scientific article

Detection of trichodysplasia spinulosa-associated polyomavirus in a fatal case of myocarditis in a seven-month-old girl

scientific article

Discrimination of Mycobacterium abscessus subsp. massiliense from Mycobacterium abscessus subsp. abscessus in clinical isolates by multiplex PCR.

scientific article

Disentangling primer interactions improves SARS-CoV-2 genome sequencing by multiplex tiling PCR

scientific article published on 18 September 2020

Distribution and Relationships of Antimicrobial Resistance Determinants among Extended-Spectrum-Cephalosporin-Resistant or Carbapenem-Resistant Escherichia coli Isolates from Rivers and Sewage Treatment Plants in India

scientific article published on 7 March 2016

Draft Genome Sequence of Helicobacter fennelliae Strain MRY12-0050, Isolated from a Bacteremia Patient.

scientific article published on 08 August 2013

Draft Genome Sequence of Rhodococcus erythropolis JCM 6824, an Aurachin RE Antibiotic Producer.

scientific article

Elucidation of quantitative structural diversity of remarkable rearrangement regions, shufflons, in IncI2 plasmids

scientific article

Enhanced isolation of SARS-CoV-2 by TMPRSS2-expressing cells

scientific article published on 12 March 2020

Enterohaemorrhagic Escherichia coli O121:H19 acquired an extended-spectrum β-lactamase gene during the development of an outbreak in two nurseries

scientific article published on 19 June 2019

Epidemic myalgia in adults associated with human parechovirus type 3 infection, Yamagata, Japan, 2008.

scientific article published on November 2012

Epidemiological Aspects of Escherichia albertii Outbreaks in Japan and Genetic Characteristics of the Causative Pathogen

scientific article published on 11 October 2019

Establishing and characterizing a new primary effusion lymphoma cell line harboring Kaposi's sarcoma-associated herpesvirus.

scientific article published on 17 August 2016

Extensive amplification of GI-VII-6, a multidrug resistance genomic island of Salmonella enterica serovar Typhimurium, increases resistance to extended-spectrum cephalosporins

scientific article

FRI-4 carbapenemase-producing Enterobacter cloacae complex isolated in Tokyo, Japan

scientific article published on 01 November 2018

First isolation and molecular characterisation of a cryptic plasmid from urease-negative Campylobacter lari.

scientific article published on January 2005

First restriction and genetic mapping of the genomic DNA of urease-positive thermophilic campylobacters (UPTC), and small restriction fragment sequencing

scientific article published in January 2006

GcoGSA-BA: a global core genome SNP analysis for Bacillus anthracis

scientific article

Genetic Analysis of Human Norovirus Strains in Japan in 2016-2017.

scientific article published on 18 January 2018

Genetic analysis of non-hydrogen sulfide-producing Salmonella enterica serovar typhimurium and S. enterica serovar infantis isolates in Japan

scientific article published on 7 November 2012

Genetic characterization and comparison of Clostridium botulinum isolates from botulism cases in Japan between 2006 and 2011.

scientific article

Genetic heterogeneity of the cytolethal distending toxin B (cdtB) gene locus among isolates of Campylobacter lari.

scientific article

Genetic heterogeneity of the dnaK gene locus including transcription terminator region (TTR) in Campylobacter lari

scientific article

Genetic variants of Kudoa septempunctata (Myxozoa: Multivalvulida), a flounder parasite causing foodborne disease

scientific article published on 11 June 2015

Genetic variation of human papillomavirus type 16 in individual clinical specimens revealed by deep sequencing.

scientific article

Genome-wide single nucleotide polymorphism typing method for identification of Bacillus anthracis species and strains among B. cereus group species

scientific article

Genomewide screening for novel genetic variations associated with ciprofloxacin resistance in Bacillus anthracis

scientific article

Haplotype networks of SARS-CoV-2 infections in the Diamond Princess cruise ship outbreak

scientific article (preprint)

Haplotype networks of SARS-CoV-2 infections in the Diamond Princess cruise ship outbreak

scientific article published on 28 July 2020

High expression of JC polyomavirus-encoded microRNAs in progressive multifocal leukoencephalopathy tissues and its repressive role in virus replication

scientific article published on 23 April 2020

Homogeneity of the 16S rDNA sequence among geographically disparate isolates of Taylorella equigenitalis.

scientific article

IMP-68, a Novel IMP-Type Metallo-β-Lactamase in Imipenem-Susceptible Klebsiella pneumoniae

scientific article published on 30 October 2019

IS256-Mediated Overexpression of the WalKR Two-Component System Regulon Contributes to Reduced Vancomycin Susceptibility in a Staphylococcus aureus Clinical Isolate

scientific article published on 14 August 2019

Identification of Kudoa septempunctata as the Causative Agent of Novel Food Poisoning Outbreaks in Japan by Consumption of Paralichthys olivaceus in Raw Fish ⬇️

scientific article published on January 26, 2012

Identification of ribonucleotide reductase mutation causing temperature-sensitivity of herpes simplex virus isolates from whitlow by deep sequencing.

scientific article published on 22 April 2015

Infection of Epstein⁻Barr Virus in Type III Latency Modulates Biogenesis of Exosomes and the Expression Profile of Exosomal miRNAs in the Burkitt Lymphoma Mutu Cell Lines

scientific article published on 19 July 2018

Inhibition of Streptococcus mutans biofilm formation by Streptococcus salivarius FruA.

scientific article

Interleukin-6-dependent growth in a newly established plasmablastic lymphoma cell line and its therapeutic targets

scientific article published on 31 August 2017

Intervening sequences in 23S rRNA genes and 23S rRNA fragmentation in Taylorella asinigenitalis UCD-1(T) strain.

scientific article

Investigation of faecal pathogens in a flock of mute swans (Cygnus olor)

scientific article published on 01 February 2004

Isolation and characterization of an Huh.7.5.1-derived cell clone highly permissive to hepatitis C virus.

scientific article

MePIC, metagenomic pathogen identification for clinical specimens

scientific article published on January 2014

Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974-2015.

scientific article published on 5 December 2017

Molecular analysis and characterisation of the full-length flagellin C gene (flaC) from Campylobacter lari.

scientific article published on January 2011

Molecular characterisation of urease genes from urease-positive thermophilic campylobacters (UPTC).

scientific article published on January 2008

Molecular characterization of intervening sequences in 23S rRNA genes and 23S rRNA fragmentation in Taylorella equigenitalis

scientific article published on 01 January 2008

Molecular characterization of the full-length 23S and 5S ribosomal RNA (rRNA) genes of Taylorella asinigenitalis.

scientific article

Molecular characterization of the sequences of the 16S-23S rDNA internal spacer region (ISR) from isolates of Taylorella asinigenitalis

scientific article

Molecular cloning, nucleotide sequencing and characterization of the flagellin gene from isolates of urease-positive thermophilic Campylobacter.

scientific article published on April 2004

Molecular evolution of haemagglutinin (H) gene in measles virus.

scientific article published on July 2015

Molecular evolution of hemagglutinin (H) gene in measles virus genotypes D3, D5, D9, and H1

scientific article

Molecular evolution of the VP1, VP2, and VP3 genes in human rhinovirus species C.

scientific article

Next-generation DNA sequencing analysis of two Streptococcus suis ST28 isolates associated with human infective endocarditis and meningitis in Gunma, Japan: a case report

scientific article published on 15 August 2018

Next-generation sequencing of miRNAs in clinical samples of Epstein-Barr virus-associated B-cell lymphomas.

scientific article published on 09 February 2017

Novel endogenous simian retroviral integrations in Vero cells: implications for quality control of a human vaccine cell substrate

scientific article published on 12 January 2018

Novel virus discovery in field-collected mosquito larvae using an improved system for rapid determination of viral RNA sequences (RDV ver4.0).

scientific article published on 16 December 2008

Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis

scientific article published on 28 February 2019

Phenotypic characterisation of flagellin and flagella of urease-positive thermophilic campylobacters.

scientific article published in January 2004

Phylogenetic Characterization of Salmonella enterica Serovar Typhimurium and Its Monophasic Variant Isolated from Food Animals in Japan Revealed Replacement of Major Epidemic Clones in the Last 4 Decades

scientific article published on 25 April 2018

Phylogeny and Immunoreactivity of Norovirus GII.P16-GII.2, Japan, Winter 2016-17.

scientific article published in January 2018

Potential KPC-2 carbapenemase reservoir of environmental Aeromonas hydrophila and Aeromonas caviae isolates from the effluent of an urban wastewater treatment plant in Japan

scientific article published on 31 May 2019

Prevalence of Colistin Resistance Gene mcr-1 and Absence of mcr-2 in Escherichia coli Isolated from Healthy Food-Producing Animals in Japan.

scientific article

Prevention of aerosol isolation of nontuberculous mycobacterium from the patient's bathroom.

scientific article

Profile of Exosomal and Intracellular microRNA in Gamma-Herpesvirus-Infected Lymphoma Cell Lines

scientific article

Protochlamydia induces apoptosis of human HEp-2 cells through mitochondrial dysfunction mediated by chlamydial protease-like activity factor

scientific article

Proviral Features of Human T Cell Leukemia Virus Type 1 in Carriers with Indeterminate Western Blot Analysis Results.

scientific article published on 12 July 2017

Rapid and affordable size-selected PacBio single-molecule real-time sequencing template library construction using the bead-beating DNA extraction method

scientific article published on 13 September 2017

Role of pathogenicity determinant protein C (PdpC) in determining the virulence of the Francisella tularensis subspecies tularensis SCHU.

scientific article

Salmonella Genomic Island 3 Is an Integrative and Conjugative Element and Contributes to Copper and Arsenic Tolerance of Salmonella enterica

scientific article published on 23 August 2019

Streptococcal toxic shock syndrome caused by the dissemination of an invasive emm3/ST15 strain of Streptococcus pyogenes.

scientific article published on 18 December 2017

Structural analysis and expression of the full-length cytochrome P450 gene operon in Campylobacter lari.

scientific article published on January 2010

Structural analysis of the full-length gene encoding a fibronectin-binding-like protein (CadF) and its adjacent genetic loci within Campylobacter lari.

scientific article

TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing.

scientific article published on 13 November 2015

The Mitochondrial Genomes of a Myxozoan Genus Kudoa Are Extremely Divergent in Metazoa

scientific article

The R2TP complex regulates paramyxovirus RNA synthesis

scientific article published on 23 May 2019

The V protein of canine distemper virus is required for virus replication in human epithelial cells

scientific article

The genome landscape of the african green monkey kidney-derived vero cell line

scientific article

The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids ⬇️

scientific article published on 29 July 2019

The host protease TMPRSS2 plays a major role in in vivo replication of emerging H7N9 and seasonal influenza viruses

scientific article

The plasmid-encoded transcription factor ArdK contributes to the repression of the IMP-6 metallo-β-lactamase gene blaIMP-6, leading to a carbapenem-susceptible phenotype in the blaIMP-6-positive Escherichia coli strain A56-1S

scientific article published in PLoS ONE

VirusTAP: Viral Genome-Targeted Assembly Pipeline

scientific article published on 2 February 2016

Whole-Genome Sequence of CMY-2 β-Lactamase-Producing Salmonella enterica Serovar Typhimurium Strain L-3553.

scientific article

Whole-genome analysis of Salmonella enterica serovar Typhimurium T000240 reveals the acquisition of a genomic island involved in multidrug resistance via IS1 derivatives on the chromosome

scientific article

Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT) database

scientific article published on 06 September 2019

[Bronchial asthma]

scientific article published on 01 November 2009

flaA-like sequences containing internal termination codons (TAG) in urease-positive thermophilic Campylobacter isolated in Japan.

scientific article published in January 2002

tRNA-Dependent Aminoacylation of an Amino Sugar Intermediate in the Biosynthesis of a Streptothricin-Related Antibiotic.

scientific article published on 15 April 2016

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