List of works by Sebastian Doniach

A comparative study of motor-protein motions by using a simple elastic-network model

scientific article published on 29 October 2003

A computer model to dynamically simulate protein folding: studies with crambin.

scientific article

A lysozyme folding intermediate revealed by solution X-ray scattering.

scientific article published in September 1996

A repulsive field: advances in the electrostatics of the ion atmosphere

scientific article published on 08 December 2008

ATP-independent reversal of a membrane protein aggregate by a chloroplast SRP subunit

scientific article

Absolute Intramolecular Distance Measurements with Angstrom-Resolution Using Anomalous Small-Angle X-ray Scattering.

scientific article published on 31 May 2016

Adaptive time stepping in biomolecular dynamics

scientific article published in September 2005

Analysis of small-angle X-ray scattering data of protein–detergent complexes by singular value decomposition

Angular correlations of photons from solution diffraction at a free-electron laser encode molecular structure

scientific article

Anion-induced folding of Staphylococcal nuclease: characterization of multiple equilibrium partially folded intermediates.

scientific article published in May 1998

Anomalous x-ray scattering from terbium-labeled parvalbumin in solution

scientific article

Anomalously large gap anisotropy in the a-b plane of Bi2Sr2CaCu2O8+ delta.

scientific article

Applications of X-ray photoabsorption spectroscopy to the determination of local structure in organometallic compounds.

scientific article published in December 1976

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models

scientific article published on 10 June 2011

Association of partially-folded intermediates of staphylococcal nuclease induces structure and stability

scientific article

Association-induced folding of globular proteins

scientific article

Biological Physics: Energy, Information, Life Biological Physics: Energy, Information, Life , Philip Nelson (with the assistance of Marko Radosavljević and Sarina Bromberg ) W. H. Freeman, New York, 2003. $92.00 (598 pp.). ISBN 0-7167-4372-8

Biophysical properties of the synucleins and their propensities to fibrillate: inhibition of alpha-synuclein assembly by beta- and gamma-synucleins

scientific article

Blue form of bacteriorhodopsin and its order-disorder transition during dehydration

scientific article published in April 1994

Calculation of angle-resolved photoemission and tunneling for a CuO2 layer in the normal and superconducting states

scientific article published on 01 May 1993

Caulobacter chromosome in vivo configuration matches model predictions for a supercoiled polymer in a cell-like confinement

scientific article

Chain collapse can occur concomitantly with the rate-limiting step in protein folding

scientific article published on 01 June 1999

Changes in biomolecular conformation seen by small angle X-ray scattering

scientific article

Characterization of transient intermediates in lysozyme folding with time-resolved small-angle X-ray scattering

scientific article published on 01 May 1999

Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis

scientific article published in May 2003

Coexistence of antiferromagnetism and superconductivity in a mean-field theory of high-Tc superconductors

scientific article published on 01 February 1988

Combining single-molecule optical trapping and small-angle x-ray scattering measurements to compute the persistence length of a protein ER/K alpha-helix.

scientific article

Computer simulation of antibody binding specificity

scientific article published in April 1993

Computers for Scientific Research

scientific article published in Nature

Counterion distribution around DNA probed by solution X-ray scattering

scientific article published on 08 May 2003

Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble

scientific article

Dependence of micelle size and shape on detergent alkyl chain length and head group

scientific article

Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding

scientific article

Distribution of molecular size within an unfolded state ensemble using small-angle X-ray scattering and pulse field gradient NMR techniques

scientific article

Do conformational biases of simple helical junctions influence RNA folding stability and specificity?

scientific article published on 22 October 2009

Doping dependence of antiferromagnetic correlations in high-temperature superconductors

scientific article published on 01 October 1988

Dynamic bond constraints in protein Langevin dynamics

scientific article

Dynamic charge interactions create surprising rigidity in the ER/K alpha-helical protein motif

scholarly article

Dynamical Phase Transition in a Driven Disordered Vortex Lattice

scientific article published on 01 December 1996

Early work with synchrotron radiation at stanford

scientific article

Effect of association state and conformational stability on the kinetics of immunoglobulin light chain amyloid fibril formation at physiological pH.

scientific article published on 28 January 2002

Effect of self-organized criticality on magnetic-flux creep in type-II superconductors: A time-delayed approach

scientific article published on 01 January 1994

Effects of columnar pins on flux line dynamics

scientific article published on 01 December 1993

Effects of nitration on the structure and aggregation of alpha-synuclein

scientific article published in March 2005

Electronic structure and optical properties of FeSi, a strongly correlated insulator

scientific article published on 01 January 1994

Electrostatics of nucleic acid folding under conformational constraint

scientific article published on 27 February 2012

Elucidation of the molecular mechanism during the early events in immunoglobulin light chain amyloid fibrillation. Evidence for an off-pathway oligomer at acidic pH.

scientific article published on 28 January 2002

Enhanced electron pairing in a lattice of Berry-phase molecules

scientific article published on 01 February 1995

Equilibrium collapse and the kinetic 'foldability' of proteins

scientific article

Erratum: Coexistence of antiferromagnetism and superconductivity in a mean-field theory of high-Tc superconductors

scientific article published on 01 April 1989

Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory

scientific article

Evidence of an associative intermediate on the myoglobin refolding pathway

scientific article

Exploring the folding landscape of a structured RNA

scientific article

Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination

scientific article

Fermi-liquid phase of the t-J model and the Hall coefficient in the high-temperature superconductors

scientific article published on 01 March 1992

Fermions and solitons in the O(3) nonlinear sigma model in 2+1 space-time dimensions

scientific article published on 01 May 1990

Field-Driven Topological Glass Transition in a Model Flux Line Lattice

scientific article published on 01 September 1996

Fold recognition aided by constraints from small angle X-ray scattering data

scientific article

Fourth-generation X-ray sources: some possible applications to biology

scientific article

Gold nanocrystal labels provide a sequence-to-3D structure map in SAXS reconstructions.

scientific article

High Magnetic Fields

How large is an alpha-helix? Studies of the radii of gyration of helical peptides by small-angle X-ray scattering and molecular dynamics

scientific article published on 01 October 2005

Kinetics of lysozyme refolding: structural characterization of a non-specifically collapsed state using time-resolved X-ray scattering

scientific article published on 01 February 1998

Location of terbium binding sites on acetylcholine receptor-enriched membranes

scientific article published on 01 June 1986

Long single alpha-helical tail domains bridge the gap between structure and function of myosin VI.

scientific article published on 30 May 2008

Long-range Coulomb interactions and the onset of superconductivity in the high-Tc materials

scientific article published on 01 April 1990

Low-Temperature Properties of Nearly Ferromagnetic Fermi Liquids

scientific article published in Physical Review Letters

Magnetic instability of a highly degenerate Kondo lattice

scientific article published on 01 February 1987

MgATP-induced conformational changes in the iron protein from Azotobacter vinelandii, as studied by small-angle x-ray scattering.

scientific article

Microscopic metal clusters and Schottky barrier formation

scientific article published on 01 February 1987

MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape

scientific article published on June 2007

Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution

scientific article published on 4 August 2006

Mixing and Matching Detergents for Membrane Protein NMR Structure Determination

Mixing and matching detergents for membrane protein NMR structure determination

scientific article

Model for a strongly correlated insulator: FeSi.

scientific article

Modeling solvation contributions to conformational free energy changes of biomolecules using a potential of mean force expansion

article published in 1995

Monte Carlo simulation of flux lattice melting in a model high-Tc superconductor

scientific article published on 01 February 1992

Multiple time step diffusive Langevin dynamics for proteins

scientific article

NIH-study-section scoring

scientific article published on 01 September 1999

Natively unfolded C-terminal domain of caldesmon remains substantially unstructured after the effective binding to calmodulin

scientific article published on 01 December 2003

Natively unfolded human prothymosin alpha adopts partially folded collapsed conformation at acidic pH.

scientific article

Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved

scientific article published on 01 April 2005

Nuclear localization of alpha-synuclein and its interaction with histones

scientific article published in July 2003

Observation of correlated X-ray scattering at atomic resolution

scientific article

Partially folded intermediates in insulin fibrillation

scientific article published in October 2003

Partially folded states of proteins: characterization by X-ray scattering

scientific article published on 01 December 1995

Penson-Kolb-Hubbard model: A study of the competition between single-particle and pair hopping in one dimension

scientific article published on 01 July 1993

Phase slips and switching in charge-density-wave transport

scientific article published on 01 December 1988

Phase transitions in uniformly frustrated XY models

scientific article published on 01 April 1985

Polarized x-ray absorption spectra of oriented plastocyanin single crystals. Investigation of methionine-copper coordination

scientific article (publication date: October 1982)

Potential for measurement of the distribution of DNA folds in complex environments using Correlated X-ray Scattering

scientific article

Potentials of mean force for biomolecular simulations: Theory and test on alanine dipeptide

Prediction of the association state of insulin using spectral parameters

scientific article published in April 2003

Principles of RNA Compaction: Insights from the Equilibrium Folding Pathway of the P4-P6 RNA Domain in Monovalent Cations

scholarly article by Keiji Takamoto published in November 2004

Probing counterion modulated repulsion and attraction between nucleic acid duplexes in solution

scientific article

Protein denaturation: a small-angle X-ray scattering study of the ensemble of unfolded states of cytochrome c.

scientific article published in September 1998

Protein dynamics simulations from nanoseconds to microseconds

scientific article

Protein flexibility in solution and in crystals

article published in 1999

Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing

scientific article published on 13 April 2005

Protein structure prediction constrained by solution X-ray scattering data and structural homology identification.

scientific article

Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids

scientific article

RNA Structure, Function, and (Thermo-) Dynamics: A SAXS and Single-Molecule Perspective

Random-coil behavior and the dimensions of chemically unfolded proteins

scholarly article

Rapid compaction during RNA folding

scientific article

Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle X-ray solution scattering data for biomolecules

article by Dirk Walther et al published 1 April 2000 in Journal of Applied Crystallography

Redistribution of terbium ions across acetylcholine receptor-enriched membranes induced by agonist desensitization

scientific article published on April 2009

Relativistic extension of the spin-polarized local-density-functional theory: Study of the electronic and magnetic properties of the rare-earth ions

scientific article published on 01 May 1985

Riboswitch conformations revealed by small-angle X-ray scattering

scientific article

Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering

scientific article

Scaling Behavior of Single Stranded DNA Measured by Small Angle X-ray Scattering

Simulations of the thermodynamic properties of a short polyalanine peptide using potentials of mean force

Size and shape of detergent micelles determined by small-angle X-ray scattering

scientific article published on 9 October 2007

Small angle X-ray scattering reveals a compact intermediate in RNA folding

scientific article published on May 2000

Small-angle X-ray scattering from RNA, proteins, and protein complexes

scientific article published on January 2007

Small-angle x-ray scattering investigation of the solution structure of troponin C.

scientific article

Small-angle x-ray scattering studies of the iron-molybdenum cofactor from Azotobacter vinelandii nitrogenase.

scientific article published in October 1993

Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein.

scientific article published in July 2000

Stimulation of insulin fibrillation by urea-induced intermediates

scientific article

Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae

scientific article published on 13 October 2006

Studies of the Structure of Matter with Photons from an X-ray Free-Electron Laser

scientific article

Technological manpower.

scientific article

The Fastest Global Events in RNA Folding: Electrostatic Relaxation and Tertiary Collapse of the Tetrahymena Ribozyme

scientific article published on 01 September 2003

The birth of the DS lineshape.

scientific article

The complete VS ribozyme in solution studied by small-angle X-ray scattering

scientific article published on September 2008

The insulator-metal transition

article published in 1969

The ligand-free state of the TPP riboswitch: a partially folded RNA structure

scientific article

The radius of gyration of an apomyoglobin folding intermediate

scientific article

Theory of photoemission and inverse photoemission in the presence of strong correlations: Application to high-Tc materials

scientific article published on 01 April 1990

Thermodynamics of monolayer formation on an impure substrate: Random-field Ising-model approach

scientific article published on 01 April 1985

Time-resolved X-ray scattering and RNA folding

scientific article published on 17 November 2009

Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins

scientific article

Toward the mechanism of dynamical couplings and translocation in hepatitis C virus NS3 helicase using elastic network model

scientific article published on June 2007

Transient dimer in the refolding kinetics of cytochrome c characterized by small-angle X-ray scattering

scientific article published on November 1999

Tuning micelle dimensions and properties with binary surfactant mixtures

scientific article

Understanding nucleic acid-ion interactions

scientific article

Unusual compactness of a polyproline type II structure

scientific article

Use of few-domain classical models to study mode locking in charge-density-wave systems

scientific article published on 01 April 1987

Use of general potentials in multiple-scattering theory

scientific article published on 01 December 1986

Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs

scientific article

White lines in L-edge x-ray absorption spectra and their implications for anomalous diffraction studies of biological materials

scientific article

X-ray Ca K edge of calcium adenosine triphosphate system and of simple Ca compunds

scientific article published in November 1978

X-ray absorption spectroscopy using synchrotron radiation for structural investigation of organometallic molecules of biological interest ⬇️

scientific article published on June 1, 1975

X-ray photoemission spectroscopy

scientific article published in Nature

Zn(2+)-mediated structure formation and compaction of the "natively unfolded" human prothymosin alpha.

scientific article

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