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List of works by Santiago Schnell

"Reproducible" Research in Mathematical Sciences Requires Changes in our Peer Review Culture and Modernization of our Current Publication Approach

article

A Graphical User Interface for a Method to Infer Kinetics and Network Architecture (MIKANA) ⬇️

scientific article published on November 11, 2011

A Kinetic Analysis of Coupled (or Auxiliary) Enzyme Reactions

scientific article published on 04 October 2018

A Model of Threshold Behavior Reveals Rescue Mechanisms of Bystander Proteins in Conformational Diseases ⬇️

scientific article published on April 20, 2011

A cell cycle model for somitogenesis: mathematical formulation and numerical simulation.

scientific article published in December 2000

A clock and wavefront mechanism for somite formation.

scientific article

A collection of intrinsic disorder characterizations from eukaryotic proteomes

scientific article

A fast method to estimate kinetic constants for enzyme inhibitors.

scientific article published in January 2001

A mathematical investigation of a Clock and Wavefront model for somitogenesis

scientific article published on 7 February 2006

A model of the unfolded protein response: pancreatic beta-cell as a case study

scientific article

A multiscale mathematical model of cancer, and its use in analyzing irradiation therapies

scientific article

A systematic investigation of the rate laws valid in intracellular environments.

scientific article

A test for measuring the effects of enzyme inactivation

scientific article published on 6 September 2006

A theory of reactant-stationary kinetics for a mechanism of zymogen activation

scientific article published on 23 August 2018

An empirical analysis of enzyme function reporting for experimental reproducibility: Missing/incomplete information in published papers

scientific article published on 24 August 2018

Approaches for the estimation of timescales in nonlinear dynamical systems: Timescale separation in enzyme kinetics as a case study

scientific article published on 6 September 2016

Autoimmunity treatment using pMHC-NP-based therapy: designing nanoparticle treatment of autoimmunity with quantitative biology

scientific article published on 23 April 2013

Bulletin of mathematical biology-facts, figures and comparisons

scientific article published in July 2004

Can tissue surface tension drive somite formation?

scientific article published on 3 May 2007

Changes in Both Neuron Intrinsic Properties and Neurotransmission Are Needed to Drive the Increase in GnRH Neuron Firing Rate during Estradiol-Positive Feedback

scientific article published on 17 January 2019

Characteristic, completion or matching timescales? An analysis of temporary boundaries in enzyme kinetics

scientific article published on 05 January 2019

Circadian rhythms regulate amelogenesis

scientific article published on 26 February 2013

Clock and induction model for somitogenesis

scientific article published in April 2000

Closed Form Solution for Time-dependent Enzyme Kinetics

Competitive inhibition reaction mechanisms for the two-step model of protein aggregation

scientific article published on 5 July 2014

Computational modelling of cell chain migration reveals mechanisms that sustain follow-the-leader behaviour

scientific article published on 4 January 2012

Connecting the dots: the effects of macromolecular crowding on cell physiology.

scientific article

Coordinated action of N-CAM, N-cadherin, EphA4, and ephrinB2 translates genetic prepatterns into structure during somitogenesis in chick

scientific article published on January 2008

Development, growth and maintenance of β-cell mass: models are also part of the story

scientific article

Disorder Atlas: Web-based software for the proteome-based interpretation of intrinsic disorder predictions

scientific article published on 13 July 2019

Enhancing career development of postdoctoral trainees: act locally and beyond

scientific article published on 31 March 2019

Enzyme catalyzed reactions: from experiment to computational mechanism reconstruction

scientific article published on 31 October 2009

Enzyme kinetics at high enzyme concentration

scientific article published in May 2000

EnzymeML: seamless data flow and modeling of enzymatic data

scientific article published on 9 February 2023

Enzymological considerations for a theoretical description of the quantitative competitive polymerase chain reaction (QC-PCR)

scientific article published on 01 February 1997

Estimation of the lag time in a subsequent monomer addition model for fibril elongation

scientific article published on 2 June 2016

Expression of clock proteins in developing tooth

scientific article

Expression of sodium channels with different saxitoxin affinity during rat forebrain development

scientific article published on 01 August 1994

Firing patterns of gonadotropin-releasing hormone neurons are sculpted by their biologic state

scientific article published on 12 August 2020

From segment to somite: segmentation to epithelialization analyzed within quantitative frameworks.

scientific article published on June 2007

Globalization and changing trends of biomedical research output

scientific article

Gonadotropin-Releasing Hormone (GnRH) Neuron Excitability Is Regulated by Estradiol Feedback and Kisspeptin.

scientific article published on 20 December 2017

Hedgehog-responsive mesenchymal clusters direct patterning and emergence of intestinal villi.

scientific article

How can mathematics help us explore vertebrate segmentation?

scientific article published on 27 January 2009

How reaction kinetics with time-dependent rate coefficients differs from generalized mass action

scientific article published on 01 July 2006

Inferring Intracellular Signal Transduction Circuitry from Molecular Perturbation Experiments

scientific article

Inferring the Effects of Honokiol on the Notch Signaling Pathway in SW480 Colon Cancer Cells

scientific article

Information processing by endoplasmic reticulum stress sensors

scientific article published on 11 September 2019

Integration of steady-state and temporal gene expression data for the inference of gene regulatory networks

scientific article

Interpreting SARS-CoV-2 seroprevalence, deaths, and fatality rate — Making a case for standardized reporting to improve communication

scientific article published in 2021

Limit cycles in the presence of convection: a first-order analysis

scientific article published on 10 October 2006

Limit cycles in the presence of convection: a traveling wave analysis.

scientific article published on 27 September 2007

Logic-based models in systems biology: a predictive and parameter-free network analysis method.

scientific article

Macroscopic simulations of microtubule dynamics predict two steady-state processes governing array morphology

scientific article

Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study

scientific article

Modelling reaction kinetics inside cells

scientific article published on January 2008

Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology

scientific article

Molecular and circadian controls of ameloblasts

scientific article

Molecular aspects of pancreatic beta cell failure and diabetes.

scientific article

Multiscale modeling of developmental systems. Introduction

scientific article published on 01 January 2008

Network motifs provide signatures that characterize metabolism ⬇️

scientific article published on January 4, 2013

Network representations and methods for the analysis of chemical and biochemical pathways.

scientific article published on September 2013

New approaches to modelling and analysis of biochemical reactions, pathways and networks

scientific article published on 01 September 2004

On the Need to Develop Guidelines for Characterizing and Reporting Intrinsic Disorder in Proteins

scientific article published on 01 March 2019

On the Validity of the Stochastic Quasi-Steady-State Approximation in Open Enzyme Catalyzed Reactions: Timescale Separation or Singular Perturbation?

scientific article published in 2021

On the estimation errors of KM and V from time-course experiments using the Michaelis-Menten equation

scientific article published on 16 September 2016

On the validity and errors of the pseudo-first-order kinetics in ligand-receptor binding

scientific article

Optimal experimental design to estimate statistically significant periods of oscillations in time course data

scientific article

Phase-plane geometries in coupled enzyme assays

scientific article published on 24 September 2018

Quantitative proteome-based guidelines for intrinsic disorder characterization.

scientific article

Reactant stationary approximation in enzyme kinetics.

scientific article published on 20 August 2008

Reconstructing biochemical pathways from time course data

scientific article

Rethinking Models of Pattern Formation in Somitogenesis

scientific article published on 28 October 2015

RhoC GTPase Is a Potent Regulator of Glutamine Metabolism and N-Acetylaspartate Production in Inflammatory Breast Cancer Cells.

scientific article published on 25 April 2016

Should digestion assays be used to estimate persistence of potential allergens in tests for safety of novel food proteins?

scientific article published on 15 January 2009

Single-molecule enzymology à la Michaelis-Menten

scientific article

Stability of open pathways ⬇️

scientific article published on September 26, 2010

Stochastic approaches for modelling in vivo reactions.

scientific article published in July 2004

Stochastic enzyme kinetics and the quasi-steady-state reductions: Application of the slow scale linear noise approximation à la Fenichel

scientific article published in 2022

Surveying the floodgates: estimating protein flux into the endoplasmic reticulum lumen in Saccharomyces cerevisiae

scientific article published on 13 November 2014

Systems biologists seek fuller integration of systems biology approaches in new cancer research programs

scientific article

Ten Simple Rules for a Computational Biologist's Laboratory Notebook

scientific article (publication date: September 2015)

The circadian clock in oral health and diseases

scientific article

The condition for pseudo-first-order kinetics in enzymatic reactions is independent of the initial enzyme concentration.

scientific article published in February 2004

The effects of time delays in a phosphorylation-dephosphorylation pathway

scientific article published on 2 October 2006

The importance of accurately correcting for the natural abundance of stable isotopes.

scientific article published on 15 December 2016

Theoretical Description of the Polymerase Chain Reaction ⬇️

scientific article published on 01 October 1997

Time-dependent closed form solutions for fully competitive enzyme reactions

scientific article published in March 2000

Turing pattern outside of the Turing domain

scientific article published on September 2007

Unraveling intestinal stem cell behavior with models of crypt dynamics

scientific article

Unraveling the complex regulatory relationships between metabolism and signal transduction in cancer

scientific article published on January 2012

Unraveling the contribution of pancreatic beta-cell suicide in autoimmune type 1 diabetes

scientific article

Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map.

scientific article published on 22 June 2006

Unravelling the impact of obstacles in diffusion and kinetics of an enzyme catalysed reaction

scientific article published on 01 March 2014

Use and abuse of the quasi-steady-state approximation.

scientific article published in July 2006

Validity of the Michaelis-Menten equation--steady-state or reactant stationary assumption: that is the question

scientific article

Waves and patterning in developmental biology: vertebrate segmentation and feather bud formation as case studies

scientific article

Why substrate depletion has apparent first-order kinetics in enzymatic digestion

scientific article published on 2 May 2006

β-arrestin mediates communication between plasma membrane and intracellular GPCRs to regulate signaling

scientific article published on 18 December 2020

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