List of works - Shirley X. Zhu

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples

scientific article

A landscape effect in tenosynovial giant-cell tumor from activation of CSF1 expression by a translocation in a minority of tumor cells

scholarly article

A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions

scientific article

Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types

scientific article

Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia

scientific article published on 9 April 2015

Clinically Relevant Molecular Subtypes in Leiomyosarcoma

scientific article

Combination approach for detecting different types of alterations in circulating tumor DNA in leiomyosarcoma

scientific article published on 20 February 2018

Coordinate expression of colony-stimulating factor-1 and colony-stimulating factor-1-related proteins is associated with poor prognosis in gynecological and nongynecological leiomyosarcoma

scientific article published on 14 May 2009

Desktop transcriptome sequencing from archival tissue to identify clinically relevant translocations

scientific article published on June 2013

Determination of stromal signatures in breast carcinoma

scientific article

Diffuse myogenin expression by immunohistochemistry is an independent marker of poor survival in pediatric rhabdomyosarcoma: a tissue microarray study of 71 primary tumors including correlation with molecular phenotype.

scientific article

Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling

scientific article

Distinction between serous tumors of low malignant potential and serous carcinomas based on global mRNA expression profiling

scientific article

Distinctive gene expression patterns in human mammary epithelial cells and breast cancers

scientific article

Endogenous versus tumor-specific host response to breast carcinoma: a study of stromal response in synchronous breast primaries and biopsy site changes

scientific article

Expression of subtype-specific group 1 leiomyosarcoma markers in a wide variety of sarcomas by gene expression analysis and immunohistochemistry

scientific article

Gastrointestinal stromal tumors (GISTs) with KIT and PDGFRA mutations have distinct gene expression profiles

scientific article

Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans

scientific article published in December 2003

Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

article

Genome evolution during progression to breast cancer

scientific article published on 08 April 2013

Genome-wide identification and characterization of Notch transcription complex-binding sequence-paired sites in leukemia cells.

scientific article published on 2 May 2017

Genome-wide transcriptome analyses reveal p53 inactivation mediated loss of miR-34a expression in malignant peripheral nerve sheath tumours

scientific article

High-resolution array-based comparative genomic hybridization for distinguishing paraffin-embedded Spitz nevi and melanomas

scientific article published on March 2004

Increased midkine expression correlates with desmoid tumour recurrence: a potential biomarker and therapeutic target

scientific article

MicroRNA profiling of BRCA1/2 mutation-carrying and non-mutation-carrying high-grade serous carcinomas of ovary

scientific article

Molecular portraits of human breast tumours

scientific article (publication date: 17 August 2000)

Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer

scientific article published on 17 December 2013

Phosphatidylinositol-3-kinase pathway mutations are common in breast columnar cell lesions

scientific article published on 30 March 2012

Placental S100 (S100P) and GATA3: markers for transitional epithelium and urothelial carcinoma discovered by complementary DNA microarray

scholarly article

Prognostic significance of macrophage infiltration in leiomyosarcomas.

scientific article published in March 2008

ROR2 is a novel prognostic biomarker and a potential therapeutic target in leiomyosarcoma and gastrointestinal stromal tumour

scientific article published on 17 February 2012

The gene expression profile of extraskeletal myxoid chondrosarcoma.

scientific article published in August 2005

The macrophage colony-stimulating factor 1 response signature in breast carcinoma

scientific article

The novel marker, DOG1, is expressed ubiquitously in gastrointestinal stromal tumors irrespective of KIT or PDGFRA mutation status

scientific article

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

scientific article

List of works by Shirley X. Zhu

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples

A landscape effect in tenosynovial giant-cell tumor from activation of CSF1 expression by a translocation in a minority of tumor cells

A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions

Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types

Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia

Clinically Relevant Molecular Subtypes in Leiomyosarcoma

Combination approach for detecting different types of alterations in circulating tumor DNA in leiomyosarcoma

Coordinate expression of colony-stimulating factor-1 and colony-stimulating factor-1-related proteins is associated with poor prognosis in gynecological and nongynecological leiomyosarcoma

Desktop transcriptome sequencing from archival tissue to identify clinically relevant translocations

Determination of stromal signatures in breast carcinoma

Diffuse myogenin expression by immunohistochemistry is an independent marker of poor survival in pediatric rhabdomyosarcoma: a tissue microarray study of 71 primary tumors including correlation with molecular phenotype.

Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling

Distinction between serous tumors of low malignant potential and serous carcinomas based on global mRNA expression profiling

Distinctive gene expression patterns in human mammary epithelial cells and breast cancers

Endogenous versus tumor-specific host response to breast carcinoma: a study of stromal response in synchronous breast primaries and biopsy site changes

Expression of subtype-specific group 1 leiomyosarcoma markers in a wide variety of sarcomas by gene expression analysis and immunohistochemistry

Gastrointestinal stromal tumors (GISTs) with KIT and PDGFRA mutations have distinct gene expression profiles

Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans

Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

Genome evolution during progression to breast cancer

Genome-wide identification and characterization of Notch transcription complex-binding sequence-paired sites in leukemia cells.

Genome-wide transcriptome analyses reveal p53 inactivation mediated loss of miR-34a expression in malignant peripheral nerve sheath tumours

High-resolution array-based comparative genomic hybridization for distinguishing paraffin-embedded Spitz nevi and melanomas

Increased midkine expression correlates with desmoid tumour recurrence: a potential biomarker and therapeutic target

MicroRNA profiling of BRCA1/2 mutation-carrying and non-mutation-carrying high-grade serous carcinomas of ovary

Molecular portraits of human breast tumours

Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer

Phosphatidylinositol-3-kinase pathway mutations are common in breast columnar cell lesions

Placental S100 (S100P) and GATA3: markers for transitional epithelium and urothelial carcinoma discovered by complementary DNA microarray

Prognostic significance of macrophage infiltration in leiomyosarcomas.

ROR2 is a novel prognostic biomarker and a potential therapeutic target in leiomyosarcoma and gastrointestinal stromal tumour

The gene expression profile of extraskeletal myxoid chondrosarcoma.

The macrophage colony-stimulating factor 1 response signature in breast carcinoma

The novel marker, DOG1, is expressed ubiquitously in gastrointestinal stromal tumors irrespective of KIT or PDGFRA mutation status

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers