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List of works by Milton Y Nishiyama

A Multiomics Approach Unravels New Toxins With Possible In Silico Antimicrobial, Antiviral, and Antitumoral Activities in the Venom of Acanthoscurria rondoniae

scientific article published on 17 July 2020

An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses

scientific article published on 08 September 2018

An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches

scientific article published on 01 August 2018

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

scientific article published on 01 December 2019

Biofuel and energy crops: high-yield Saccharinae take center stage in the post-genomics era

scientific article

Bothrops jararaca accessory venom gland is an ancillary source of toxins to the snake

scientific article published on 8 January 2018

Building the sugarcane genome for biotechnology and identifying evolutionary trends.

scientific article

Circadian rhythms of sense and antisense transcription in sugarcane, a highly polyploid crop

scientific article (publication date: 2013)

Comparison of venoms from wild and long-term captive Bothrops atrox snakes and characterization of Batroxrhagin, the predominant class PIII metalloproteinase from the venom of this species

scientific article

De novo assembly and annotation of Hyalomma dromedarii tick (Acari: Ixodidae) sialotranscriptome with regard to gender differences in gene expression.

scientific article published on 24 May 2018

Development of CaneRegNet platform for functional annotation and analysis of sugarcane transcriptome ⬇️

academic thesis

ESTWeb: bioinformatics services for EST sequencing projects

scientific article published in August 2003

Early response of C2C12 myotubes to a sub-cytotoxic dose of hemorrhagic metalloproteinase HF3 from Bothrops jararaca venom

scientific article published on 12 December 2018

Elevated CO2 increases photosynthesis, biomass and productivity, and modifies gene expression in sugarcane

scientific article published on 21 April 2008

EspFu-Mediated Actin Assembly Enhances Enteropathogenic Escherichia coli Adherence and Activates Host Cell Inflammatory Signaling Pathways

scientific article published on 14 April 2020

Field microenvironments regulate crop diel transcript and metabolite rhythms

scientific article published in 2021

Full-length enriched cDNA libraries and ORFeome analysis of sugarcane hybrid and ancestor genotypes

scientific article

Functional proteomic analyses of Bothrops atrox venom reveals phenotypes associated with habitat variation in the Amazon.

scientific article published on 5 March 2017

GRASSIUS: a platform for comparative regulatory genomics across the grasses

scientific article published on 5 November 2008

Identification of Novel Interspersed DNA Repetitive Elements in the Trypanosoma cruzi Genome Associated with the 3'UTRs of Surface Multigenic Families

scientific article published on 21 October 2020

Identification of sense and antisense transcripts regulated by drought in sugarcane.

scientific article

Integrative multiomics analysis of Premolis semirufa caterpillar venom in the search for molecules leading to a joint disease

scientific article published on 21 January 2021

Lachesis muta (Viperidae) cDNAs reveal diverging pit viper molecules and scaffolds typical of cobra (Elapidae) venoms: implications for snake toxin repertoire evolution.

scientific article

Latency-associated DNA methylation patterns among HIV-1 infected individuals with distinct disease progression courses or antiretroviral virologic response

scientific article published on 26 November 2021

Modulation of stress and immune response by Amblyomin-X results in tumor cell death in a horse melanoma model

scientific article published on 14 April 2020

Molecular alterations in the extracellular matrix in the brains of newborns with congenital Zika syndrome

scientific article published on 09 June 2020

Molecular mechanisms underlying intraspecific variation in snake venom

scientific article published on 03 April 2018

Myriapod haemocyanin: the first three-dimensional reconstruction of Scolopendra subspinipes and preliminary structural analysis of S. viridicornis

scientific article published on 01 April 2020

Natural blood feeding and temperature shift modulate the global transcriptional profile of Rickettsia rickettsii infecting its tick vector

scientific article

Novel Insights Into the Early Stages of Ratoon Stunting Disease of Sugarcane Inferred from Transcript and Protein Analysis

scientific article published on 09 November 2018

Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii

scientific article

Peptidomics of Acanthoscurria gomesiana spider venom reveals new toxins with potential antimicrobial activity.

scientific article published on 16 July 2016

Potential venom diversity hidden by automatic annotation: Manual curation of highly-expressed sequences automatically annotated as "no hits" in P. nigriventer transcriptome reveals novel venom components

scientific article published on 01 April 2020

Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions.

scientific article

Replacement and parallel simplification of non-homologous proteinases maintain venom phenotypes in rear-fanged snakes

scientific article published on 28 July 2020

Replication origin location might contribute to genetic variability in Trypanosoma cruzi

scientific article published on 22 June 2020

Rhythms of Transcription in Field-Grown Sugarcane Are Highly Organ Specific

scientific article published on 16 April 2020

Screening the Schistosoma mansoni transcriptome for genes differentially expressed in the schistosomulum stage in search for vaccine candidates.

scientific article

Sexual dimorphism in the venom peptidome of the Amazonian spider Acanthoscurria juruenicola: Biological insights and potential new antitumoral and antimicrobial agents

scientific article published on 01 April 2020

Signal transduction-related responses to phytohormones and environmental challenges in sugarcane

scientific article

Sugarcane

Sugarcane genes associated with sucrose content

scientific article (publication date: 21 March 2009)

Systems analysis of subjects acutely infected with the Chikungunya virus

scientific article published in June 2019

The complete mitochondrial genome of Bothrops jararaca (Reptilia, Serpentes, Viperidae)

article by Diego Dantas Almeida et al published January 2016 in Mitochondrial DNA. Part B, Resources

The impact of rattlesnake venom on mice cerebellum proteomics points to synaptic inhibition and tissue damage

scientific article published on 06 April 2020

Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni

scientific article published on 14 September 2003

Transcriptome profiling and Calreticulin expression in Zika virus -infected Aedes aegypti

scientific article published in 2023

Venom Profiling of the Insular Species <i>Bothrops alcatraz</i>: Characterization of Proteome, Glycoproteome, and N-Terminome Using Terminal Amine Isotopic Labeling of Substrates

scientific article published on 06 January 2021

Virulence Potential of a Multidrug-Resistant Escherichia coli Strain Belonging to the Emerging Clonal Group ST101-B1 Isolated from Bloodstream Infection

scientific article published on 30 May 2020

Whole-Genome Sequence of a Bordetella pertussis Brazilian Vaccine Strain.

scientific article

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