List of works by Jonathan R. Pollack

A DNA microarray survey of gene expression in normal human tissues

scientific article

A fused lasso latent feature model for analyzing multi-sample aCGH data

scientific article

A gene expression signature of genetic instability in colon cancer

scientific article published on October 2005

A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies

scientific article

A method for calling gains and losses in array CGH data

scientific article

A transcriptional response to Wnt protein in human embryonic carcinoma cells

scientific article

A tri-marker proliferation index predicts biochemical recurrence after surgery for prostate cancer

scientific article

A variant TMPRSS2 isoform and ERG fusion product in prostate cancer with implications for molecular diagnosis

scientific article published on 2 March 2007

Aberrant epidermal growth factor receptor signaling and enhanced sensitivity to EGFR inhibitors in lung cancer.

scientific article published on January 2005

Abstract 10: Oncogenic variant EGFRvIII defines a hierarchy in glioblastoma and expression is restricted by epigenetic mechanisms despite the presence of gene amplification

article

Ameloblastoma: a clinical review and trends in management

scientific article published on 30 April 2015

Amplification of EMSY, a novel oncogene on 11q13, in high grade ovarian surface epithelial carcinomas

scientific article

Application of genomic technologies to human prostate cancer

scientific article published on January 2006

Array-based comparative genomic hybridization identifies localized DNA amplifications and homozygous deletions in pancreatic cancer

scientific article published on June 2005

Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types

scientific article

CAMK1D amplification implicated in epithelial-mesenchymal transition in basal-like breast cancer

scientific article published on 02 October 2008

CDX2 is an amplified lineage-survival oncogene in colorectal cancer

scientific article

Comparative genomic hybridization on spotted oligonucleotide microarrays

scientific article published on January 2009

Comparative profiling of primary colorectal carcinomas and liver metastases identifies LEF1 as a prognostic biomarker

scientific article

Convergent structural alterations define SWItch/Sucrose NonFermentable (SWI/SNF) chromatin remodeler as a central tumor suppressive complex in pancreatic cancer

scientific article

DNA microarray and proteomic strategies for understanding alcohol action

scientific article published on April 2006

DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data

scientific article

Disclosure of Candidate Genes in Acute Myeloid Leukemia With Complex Karyotypes Using Microarray-Based Molecular Characterization

Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer

scientific article

ESR1 gene amplification in breast cancer: a common phenomenon?

scientific article published on 01 July 2008

Expression of tumor-associated antigens in acute myeloid leukemia: Implications for specific immunotherapeutic approaches

scientific article

Focal amplification and oncogene dependency of GAB2 in breast cancer

scientific article

Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans

scientific article published in December 2003

Gene expression patterns in renal cell carcinoma assessed by complementary DNA microarray.

scholarly article

Gene expression profiling identifies clinically relevant subtypes of prostate cancer

scholarly article

Gene-expression profiling identifies distinct subclasses of core binding factor acute myeloid leukemia

scientific article published on 07 May 2007

Genes co-amplified with ERBB2 or MET as novel potential cancer-promoting genes in gastric cancer

scientific article published on 21 September 2017

Genome-wide analysis of DNA copy-number changes using cDNA microarrays

scientific article (publication date: September 1999)

Genome-wide characterization of gene expression variations and DNA copy number changes in prostate cancer cell lines

scientific article

Genomic and functional analysis identifies CRKL as an oncogene amplified in lung cancer

scientific article published on 7 December 2009

Genomic instability in breast cancer: pathogenesis and clinical implications

scientific article

Genomic profiling identifies GATA6 as a candidate oncogene amplified in pancreatobiliary cancer

scientific article

Genomic profiling identifies TITF1 as a lineage-specific oncogene amplified in lung cancer

scientific article

Genomic profiling reveals alternative genetic pathways of prostate tumorigenesis

scientific article

High-resolution array-based comparative genomic hybridization for distinguishing paraffin-embedded Spitz nevi and melanomas

scientific article published on March 2004

Identification of candidate prostate cancer genes through comparative expression-profiling of seminal vesicle

scientific article published on August 2008

Identification of recurrent SMO and BRAF mutations in ameloblastomas

scientific article published on 25 May 2014

Integration of diverse microarray data types

scientific article

Integrative Genomics Implicates EGFR as a Downstream Mediator in NKX2-1 Amplified Non-Small Cell Lung Cancer

scientific article published on 10 November 2015

Integrative bioinformatics links HNF1B with clear cell carcinoma and tumor-associated thrombosis

scientific article

Integrative genomic and functional profiling of the pancreatic cancer genome

scientific article

KIT mutations confer a distinct gene expression signature in core binding factor leukaemia

scientific article published on 08 January 2010

LYN is a mediator of epithelial-mesenchymal transition and a target of dasatinib in breast cancer

scientific article

Lineage-specific gene duplication and loss in human and great ape evolution

scientific article published in July 2004

Loss of Expression of AZGP1 Is Associated With Worse Clinical Outcomes in a Multi-Institutional Radical Prostatectomy Cohort

scientific article published on 21 June 2016

MYC stimulates EZH2 expression by repression of its negative regulator miR-26a

scientific article

Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors

scientific article

Molecular portraits of human breast tumours

scientific article (publication date: 17 August 2000)

Molecular profiling of breast cancer cell lines defines relevant tumor models and provides a resource for cancer gene discovery

scientific article

Most canine ameloblastomas harbor HRAS mutations, providing a novel large-animal model of RAS-driven cancer

Novel lincRNA SLINKY is a prognostic biomarker in kidney cancer

scientific article published on March 2017

Physical mapping of genes in somatic cell radiation hybrids by comparative genomic hybridization to cDNA microarrays

scientific article

RNA interference-based functional dissection of the 17q12 amplicon in breast cancer reveals contribution of coamplified genes

scientific article published on August 2006

Recurrent deletion of CHD1 in prostate cancer with relevance to cell invasiveness

scientific article

Recurrent rearrangements of the Myb/SANT-like DNA-binding domain containing 3 gene (MSANTD3) in salivary gland acinic cell carcinoma

scientific article published on 17 February 2017

Regularized Multivariate Regression for Identifying Master Predictors with Application to Integrative Genomics Study of Breast Cancer

scientific article published on March 2010

SMURF1 amplification promotes invasiveness in pancreatic cancer

scientific article

SWI/SNF aberrations sensitize pancreatic cancer cells to DNA crosslinking agents.

scientific article published on 8 August 2017

Steroid receptor coactivator-3 expression in lung cancer and its role in the regulation of cancer cell survival and proliferation

scientific article

Target discovery and validation in pancreatic cancer

scientific article published on January 2007

The diagnosis and management of pre-invasive breast disease: promise of new technologies in understanding pre-invasive breast lesions

scientific article

The retinoic acid synthesis gene ALDH1a2 is a candidate tumor suppressor in prostate cancer

scientific article published on 15 September 2005

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

scientific article

Use of gene-expression profiling to identify prognostic subclasses in adult acute myeloid leukemia

scientific article

c-Jun N-terminal kinase is activated in non-small-cell lung cancer and promotes neoplastic transformation in human bronchial epithelial cells.

scientific article published on 23 October 2006

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