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List of works by Matt van de Rijn

-Expressing Cancer-Associated Fibroblasts Mediate Metabolic Reprogramming in Human Lung Adenocarcinoma

14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma

scientific article published on 5 January 2012

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples

scientific article

A DNA microarray survey of gene expression in normal human tissues

scientific article

A cell-intrinsic role for TLR2-MYD88 in intestinal and breast epithelia and oncogenesis.

scientific article

A clinico-genomic analysis of soft tissue sarcoma patients reveals CDKN2A deletion as a biomarker for poor prognosis

scientific article published on 11 September 2019

A compact VEGF signature associated with distant metastases and poor outcomes

scientific article

A human lung tumor microenvironment interactome identifies clinically relevant cell-type cross-talk

scientific article published on 07 May 2020

A landscape effect in tenosynovial giant-cell tumor from activation of CSF1 expression by a translocation in a minority of tumor cells

scholarly article

A murine model of allergic rhinitis: Studies on the role of IgE in pathogenesis and analysis of the eosinophil influx elicited by allergen and eotaxin ⬇️

scientific article published on July 1, 1998

A novel method for making "tissue" microarrays from small numbers of suspension cells

scientific article published on 01 March 2005

A novel monoclonal antibody against DOG1 is a sensitive and specific marker for gastrointestinal stromal tumors

scientific article

A panel of antibodies to determine site of origin and malignancy in smooth muscle tumors

scientific article published on 4 September 2009

A role for versican in the development of leiomyosarcoma

scientific article

A systems biology approach to anatomic diversity of skin

scientific article published on April 2008

A tri-marker proliferation index predicts biochemical recurrence after surgery for prostate cancer

scientific article

A variant TMPRSS2 isoform and ERG fusion product in prostate cancer with implications for molecular diagnosis

scientific article published on 2 March 2007

Analysis of stromal signatures in the tumor microenvironment of ductal carcinoma in situ

scientific article

Anti-KIT monoclonal antibody inhibits imatinib-resistant gastrointestinal stromal tumor growth

scientific article published on 4 February 2013

Antibody therapy targeting the CD47 protein is effective in a model of aggressive metastatic leiomyosarcoma

scientific article

Apo D in soft tissue tumors: a novel marker for dermatofibrosarcoma protuberans

scientific article

Automated quantitative analysis of estrogen receptor expression in breast carcinoma does not differ from expert pathologist scoring: a tissue microarray study of 3,484 cases

scientific article published on 3 October 2007

Biochemical comparison of the T6 antigen and HLA-A,B antigens ⬇️

scientific article published on January 1, 1983

Bone morphogenetic protein antagonist gremlin 1 is widely expressed by cancer-associated stromal cells and can promote tumor cell proliferation

scholarly article

Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types

scientific article

CD47-blocking immunotherapies stimulate macrophage-mediated destruction of small-cell lung cancer

scientific article published on 13 June 2016

CDX2 as a Prognostic Biomarker in Stage II and Stage III Colon Cancer

scientific article

CDX2 is an amplified lineage-survival oncogene in colorectal cancer

scientific article

CSF1 expression in nongynecological leiomyosarcoma is associated with increased tumor angiogenesis

scientific article

Characterization of a novel anti-fatty acid synthase (FASN) antiserum in breast tissue

scientific article published on 26 September 2008

Clinically Relevant Molecular Subtypes in Leiomyosarcoma

scientific article

Combination approach for detecting different types of alterations in circulating tumor DNA in leiomyosarcoma

scientific article published on 20 February 2018

Comparative gene expression profiling of benign and malignant lesions reveals candidate therapeutic compounds for leiomyosarcoma

scientific article

Comparative profiling of primary colorectal carcinomas and liver metastases identifies LEF1 as a prognostic biomarker

scientific article

Coordinate expression of colony-stimulating factor-1 and colony-stimulating factor-1-related proteins is associated with poor prognosis in gynecological and nongynecological leiomyosarcoma

scientific article published on 14 May 2009

Cyclin D1 as a diagnostic immunomarker for endometrial stromal sarcoma with YWHAE-FAM22 rearrangement

scientific article

DOG1 for the diagnosis of gastrointestinal stromal tumor (GIST): Comparison between 2 different antibodies

scientific article published on 01 July 2010

Desktop transcriptome sequencing from archival tissue to identify clinically relevant translocations

scientific article published on June 2013

Detection of Circulating Tumor DNA in Patients With Uterine Leiomyomas

scientific article published on 16 October 2019

Detection of Epstein-Barr virus in cardiac biopsies of heart transplant patients with lymphoproliferative disorders ⬇️

scientific article published on September 15, 1995

Detection of Premalignant Gastrointestinal Lesions Using Surface-Enhanced Resonance Raman Scattering-Nanoparticle Endoscopy

scientific article published on 04 February 2019

Detection of SS18-SSX1/2 fusion transcripts in circulating tumor cells of patients with synovial sarcoma

Determination of stromal signatures in breast carcinoma

scientific article

Diagnostic implications of podoplanin expression in peripheral nerve sheath neoplasms

scientific article published on 01 June 2008

Diffuse myogenin expression by immunohistochemistry is an independent marker of poor survival in pediatric rhabdomyosarcoma: a tissue microarray study of 71 primary tumors including correlation with molecular phenotype.

scientific article

Discovery and Characterization of Recurrent, Targetable ALK Fusions in Leiomyosarcoma

scientific article published on 05 December 2018

Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling

scientific article

Distinction between serous tumors of low malignant potential and serous carcinomas based on global mRNA expression profiling

scientific article

Distinctive gene expression patterns in human mammary epithelial cells and breast cancers

scientific article

Diversity of gene expression in adenocarcinoma of the lung

scientific article (publication date: 20 November 2001)

Diversity, topographic differentiation, and positional memory in human fibroblasts

scientific article

Dystrophin is a tumor suppressor in human cancers with myogenic programs

scientific article

EWSR1 fusion proteins mediate PAX7 expression in Ewing sarcoma

scientific article published on 23 June 2017

Endogenous versus tumor-specific host response to breast carcinoma: a study of stromal response in synchronous breast primaries and biopsy site changes

scientific article

Endoscopic molecular imaging of human bladder cancer using a CD47 antibody

scientific article

Endothelial cell diversity revealed by global expression profiling

scientific article

Engineered SIRPα variants as immunotherapeutic adjuvants to anticancer antibodies

scientific article

Erratum: Human melanoma-initiating cells express neural crest nerve growth factor receptor CD271

scientific article published in Nature

Experimental approaches to the study of cancer-stroma interactions: recent findings suggest a pivotal role for stroma in carcinogenesis

scientific article published on 13 August 2007

Expression of FKBP12 in benign and malignant vascular endothelium: an immunohistochemical study on conventional sections and tissue microarrays

scientific article

Expression of cytokeratins 17 and 5 identifies a group of breast carcinomas with poor clinical outcome

scientific article

Expression of subtype-specific group 1 leiomyosarcoma markers in a wide variety of sarcomas by gene expression analysis and immunohistochemistry

scientific article

Expression of the major histocompatibility antigens HLA-A2 and HLA-B7 by DNA-mediated gene transfer ⬇️

scientific article published on October 1, 1983

Extranodal head and neck lymphomas in guatemala: High frequency of epstein-barr virus-associated sinonasal lymphomas ⬇️

scientific article published on July 1, 1997

Extraskeletal osteosarcoma of the hand: the role of marginal excision and adjuvant radiation therapy

scientific article

Familial Gastrointestinal Stromal Tumor Syndrome: Phenotypic and Molecular Features in a Kindred

scientific article published on 01 April 2005

Flipping the script on macrophages in leiomyosarcoma

scientific article published on October 2012

Follicular dendritic cell immunohistochemical markers in angioimmunoblastic T-cell lymphoma

scientific article

Gastrointestinal stromal tumors (GISTs) with KIT and PDGFRA mutations have distinct gene expression profiles

scientific article

Gene Expression Profiles of Cutaneous B Cell Lymphoma ⬇️

scientific article published on May 1, 2003

Gene expression in the normal adult human kidney assessed by complementary DNA microarray

scholarly article

Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans

scientific article published in December 2003

Gene expression patterns in ovarian carcinomas

scientific article

Gene expression patterns in pancreatic tumors, cells and tissues

scientific article

Gene expression patterns in renal cell carcinoma assessed by complementary DNA microarray.

scholarly article

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

scientific article (publication date: 11 September 2001)

Gene expression profiling for the investigation of soft tissue sarcoma pathogenesis and the identification of diagnostic, prognostic, and predictive biomarkers

scientific article published on 02 May 2009

Gene expression profiling identifies clinically relevant subtypes of prostate cancer

scholarly article

Gene expression profiling identifies p63 as a diagnostic marker for giant cell tumor of the bone

article

Gene expression profiling of breast cancer

scientific article

Gene expression profiling of low-grade endometrial stromal sarcoma indicates fusion protein-mediated activation of the Wnt signaling pathway

scientific article published on 12 March 2018

Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers

scientific article

Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds

scientific article

Gene expression studies on soft tissue tumors

scientific article published on November 2002

Genetics of soft tissue tumors

scientific article published on January 2006

Genome-wide transcriptome analyses reveal p53 inactivation mediated loss of miR-34a expression in malignant peripheral nerve sheath tumours

scientific article

Genomic aberrations in cell cycle genes predict progression of -mutant gastrointestinal stromal tumors (GISTs)

article

Genomic profiling identifies GATA6 as a candidate oncogene amplified in pancreatobiliary cancer

scientific article

Giant Pulmonary Artery Aneurysm in a Patient With Marfan Syndrome and Pulmonary Hypertension.

scientific article published on March 2016

Gross genomic alterations and gene expression profiles of high- grade serous carcinoma of the ovary with and without BRCA1 inactivation

scientific article

Hep par 1 antibody stain for the differential diagnosis of hepatocellular carcinoma: 676 tumors tested using tissue microarrays and conventional tissue sections

scientific article published on 01 February 2003

Hierarchical clustering analysis of tissue microarray immunostaining data identifies prognostically significant groups of breast carcinoma

scientific article

High-resolution array-based comparative genomic hybridization for distinguishing paraffin-embedded Spitz nevi and melanomas

scientific article published on March 2004

Histone deacetylase inhibitors reverse SS18-SSX-mediated polycomb silencing of the tumor suppressor early growth response 1 in synovial sarcoma

scientific article

Human melanoma-initiating cells express neural crest nerve growth factor receptor CD271

scientific article

Identification of prognostically relevant and reproducible subsets of endometrial adenocarcinoma based on clustering analysis of immunostaining data

scientific article

Identification, molecular characterization, clinical prognosis, and therapeutic targeting of human bladder tumor-initiating cells

scientific article published on 18 August 2009

Immune checkpoint blockade as a potential therapeutic strategy for undifferentiated malignancies

scientific article published on 07 July 2018

Immunohistochemical analysis of gel-transferred cells in cytologic preparations following smear division ⬇️

scientific article published on 01 May 1998

Immunohistochemical and biogenetic features of diffuse-type tenosynovial giant cell tumors: the potential roles of cyclin A, P53, and deletion of 15q in sarcomatous transformation

scientific article

Immunohistochemical and clinical characterization of the basal-like subtype of invasive breast carcinoma

scientific article

Immunohistochemical profile of the sodium/iodide symporter in thyroid, breast, and other carcinomas using high density tissue microarrays and conventional sections.

scientific article published in April 2003

Immunohistochemistry for PAX7 is a useful confirmatory marker for Ewing sarcoma in decalcified bone marrow core biopsy specimens

scientific article published on 17 July 2018

Increased midkine expression correlates with desmoid tumour recurrence: a potential biomarker and therapeutic target

scientific article

Intraepithelial T cells and prognosis in ovarian carcinoma: novel associations with stage, tumor type and BRCA1 loss

scientific article published on 05 December 2008

KIT Signaling Promotes Growth of Colon Xenograft Tumors in Mice and Is Up-Regulated in a Subset of Human Colon Cancers

scientific article published on 27 May 2015

Leiomyosarcoma: One disease or distinct biologic entities based on site of origin?

scientific article published in June 2015

Loss of H3K27 tri-methylation is a diagnostic marker for malignant peripheral nerve sheath tumors and an indicator for an inferior survival

scientific article published on 01 September 2016

Loss of H3K27 tri-methylation is a diagnostic marker for malignant peripheral nerve sheath tumors and an indicator for an inferior survival.

scientific article published on 18 March 2016

MAX inactivation is an early event in GIST development that regulates p16 and cell proliferation.

scientific article published on 08 March 2017

Macrophage infiltration and genetic landscape of undifferentiated uterine sarcomas

scientific article

Mapping a multiplexed zoo of mRNA expression

scientific article

MicroRNA expression signature of human sarcomas

scientific article published on 8 October 2007

MicroRNA profiling of BRCA1/2 mutation-carrying and non-mutation-carrying high-grade serous carcinomas of ovary

scientific article

Modeling clear cell sarcomagenesis in the mouse: cell of origin differentiation state impacts tumor characteristics

scientific article

Molecular characterisation of soft tissue tumours: a gene expression study

scientific article published in The Lancet

Molecular pathological analysis of sarcomas using paraffin-embedded tissue: current limitations and future possibilities

scientific article

Molecular portraits of human breast tumours

scientific article (publication date: 17 August 2000)

Molecular subtyping of leiomyosarcoma with 3' end RNA sequencing

scientific article published on September 2015

Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer

scientific article published on 17 December 2013

Novel endothelial cell markers in hepatocellular carcinoma

scientific article published in October 2004

Oncogenic regulators and substrates of the anaphase promoting complex/cyclosome are frequently overexpressed in malignant tumors.

scientific article published on May 2007

Ossifying fibromyxoid tumor of soft parts presenting as a scalp cyst

scientific article

Other targetable sarcomas

scientific article

PAX7 Expression in Rhabdomyosarcoma, Related Soft Tissue Tumors, and Small Round Blue Cell Neoplasms

scientific article published on 11 August 2016

PAX7 expression in sarcomas bearing the EWSR1-NFATC2 translocation

scientific article published on 09 July 2018

Placental S100 (S100P) and GATA3: markers for transitional epithelium and urothelial carcinoma discovered by complementary DNA microarray

scholarly article

Post-transcriptional dysregulation by miRNAs is implicated in the pathogenesis of gastrointestinal stromal tumor [GIST]

scientific article published in 2013

Prognostic significance of macrophage infiltration in leiomyosarcomas.

scientific article published in March 2008

Progressive loss of myogenic differentiation in leiomyosarcoma has prognostic value

scientific article

ROR2 is a novel prognostic biomarker and a potential therapeutic target in leiomyosarcoma and gastrointestinal stromal tumour

scientific article published on 17 February 2012

Radiation-associated synovial sarcoma ⬇️

scientific article published on 01 November 1997

Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival

scientific article

Ror2, a developmentally regulated kinase, promotes tumor growth potential in renal cell carcinoma

scientific article

SMURF1 amplification promotes invasiveness in pancreatic cancer

scientific article

Screening of tissue microarrays for ubiquitin proteasome system components in tumors

scientific article published in January 2005

Software tools for high-throughput analysis and archiving of immunohistochemistry staining data obtained with tissue microarrays

scientific article

Sox10 and S100 in the diagnosis of soft-tissue neoplasms

scientific article published on 01 October 2012

Stromal responses among carcinomas--response

scientific article published on March 2014

Stromal responses among common carcinomas correlated with clinicopathologic features

scientific article published on 26 June 2013

Stromal signatures in endometrioid endometrial carcinomas.

scientific article published on 22 November 2013

Structure-Guided Blockade of CSF1R Kinase in Tenosynovial Giant-Cell Tumor

scientific article

Systematic analysis of breast cancer morphology uncovers stromal features associated with survival

scientific article published in November 2011

TLE1 as a diagnostic immunohistochemical marker for synovial sarcoma emerging from gene expression profiling studies.

scientific article published in February 2007

TMA-Combiner, a simple software tool to permit analysis of replicate cores on tissue microarrays

article

The CD47-signal regulatory protein alpha (SIRPa) interaction is a therapeutic target for human solid tumors

scientific article

The Outcome of Patients With Localized Undifferentiated Pleomorphic Sarcoma of the Lower Extremity Treated at Stanford University

scientific article published on 01 February 2019

The Stanford Tissue Microarray Database

scientific article

The clinicopathologic features of YWHAE-FAM22 endometrial stromal sarcomas: a histologically high-grade and clinically aggressive tumor

scientific article published on 01 May 2012

The fibromatosis signature defines a robust stromal response in breast carcinoma

scientific article published on 14 April 2008

The gene expression profile of extraskeletal myxoid chondrosarcoma

scientific article published in August 2005

The macrophage colony-stimulating factor 1 response signature in breast carcinoma

scientific article

The novel marker, DOG1, is expressed ubiquitously in gastrointestinal stromal tumors irrespective of KIT or PDGFRA mutation status

scientific article

The prognostic value of tumor-associated macrophages in leiomyosarcoma: a single institution study

scientific article published on February 2011

The retinoic acid synthesis gene ALDH1a2 is a candidate tumor suppressor in prostate cancer

scientific article published on 15 September 2005

The utility of PAX5 immunohistochemistry in the diagnosis of undifferentiated malignant neoplasms

scientific article published on 25 May 2007

Three differentiation states risk-stratify bladder cancer into distinct subtypes

scientific article published on 19 January 2012

Tissue microarray validation of epidermal growth factor receptor and SALL2 in synovial sarcoma with comparison to tumors of similar histology

scientific article

Tissue microarrays are an effective quality assurance tool for diagnostic immunohistochemistry

scientific article

Tissue-Specific Expression of the Low-Affinity IgG Receptor, FcγRIIb, on Human Mast Cells.

scientific article

Towards a novel classification of human malignancies based on gene expression patterns

scientific article

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

scientific article

Translocation and expression of CSF1 in pigmented villonodular synovitis, tenosynovial giant cell tumor, rheumatoid arthritis and other reactive synovitides

scientific article published on 01 June 2007

Upregulation of histidine decarboxylase expression in superficial cortical nephrons during pregnancy in mice and women

scientific article (publication date: July 2006)

Use of a KIT-specific monoclonal antibody to bypass imatinib resistance in gastrointestinal stromal tumors

scientific article published on 14 May 2013

Uterine leiomyosarcomas: Tumor size, mitotic index, and biomarkers Ki67, and Bcl-2 identify two groups with different prognosis ⬇️

scientific article published on February 12, 2011

Validation of immature adipogenic status and identification of prognostic biomarkers in myxoid liposarcoma using tissue microarrays

scientific article published on 14 April 2009

Vangl2/RhoA Signaling Pathway Regulates Stem Cell Self-Renewal Programs and Growth in Rhabdomyosarcoma.

scientific article published in March 2018

Variations in stromal signatures in breast and colorectal cancer metastases

scientific article

bcl-2 Expression in Primary Malignancies of the Skin ⬇️

scientific article published on August 1, 1995

hCAP-D3 Expression Marks a Prostate Cancer Subtype With Favorable Clinical Behavior and Androgen Signaling Signature

scientific article published on 01 February 2008

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