List of works - Réka Albert

A Guard Cell Abscisic Acid (ABA) Network Model That Captures the Stomatal Resting State

scientific article published on 13 August 2020

A comparative study of qualitative and quantitative dynamic models of biological regulatory networks

A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint

scientific article published on 11 November 2019

A framework to find the logic backbone of a biological network.

scientific article published on 6 December 2017

A network model for plant-pollinator community assembly

scientific article

A network modeling approach to elucidate drug resistance mechanisms and predict combinatorial drug treatments in breast cancer

scientific article published on 29 December 2017

A new discrete dynamic model of ABA-induced stomatal closure predicts key feedback loops

scientific article published on 22 September 2017

A novel method for signal transduction network inference from indirect experimental evidence

scientific article published in September 2007

A voxelwise approach to determine consensus regions-of-interest for the study of brain network plasticity

scientific article published on 28 July 2015

Abscisic acid-responsive guard cell metabolomes of Arabidopsis wild-type and gpa1 G-protein mutants.

scientific article published on 24 December 2013

An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks

scientific article published in June 2013

Analysis of a dynamic model of guard cell signaling reveals the stability of signal propagation

scientific article

Attractor analysis of asynchronous Boolean models of signal transduction networks

scientific article published on 24 July 2010

Bacteriophage-mediated competition in Bordetella bacteria

scientific article published in July 2006

Biological switches and clocks

scientific article

Boolean modeling in systems biology: an overview of methodology and applications ⬇️

scientific article published on September 25, 2012

Boolean modeling of biological regulatory networks: a methodology tutorial

scientific article published on 9 November 2012

Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action

scientific article

Boolean modeling: a logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions

scientific article published on September 2014

Boolean models of within-host immune interactions

scientific article published on 10 May 2010

Boolean network simulations for life scientists

scientific article

Border control--a membrane-linked interactome of Arabidopsis

scientific article

Cell Line–Specific Network Models of ER+ Breast Cancer Identify Potential PI3Kα Inhibitor Resistance Mechanisms and Drug Combinations

scientific article published on 13 July 2021

Cell fate reprogramming by control of intracellular network dynamics ⬇️

scientific article published on 7 April 2015

Combinatorial interventions inhibit TGFβ-driven epithelial-to-mesenchymal transition and support hybrid cellular phenotypes

scientific article

Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells ⬇️

scientific article

Compensatory interactions to stabilize multiple steady states or mitigate the effects of multiple deregulations in biological networks. ⬇️

scientific article

Computationally efficient measure of topological redundancy of biological and social networks

scientific article published on 29 September 2011

Conserved network motifs allow protein-protein interaction prediction.

scientific article

Constraint-based network model of pathogen-immune system interactions

scientific article published on 24 October 2008

Correlations in the degeneracy of structurally controllable topologies for networks.

scientific article

Data-Driven Math Model of FLT3-ITD Acute Myeloid Leukemia Reveals Potential Therapeutic Targets

scientific article published on 11 March 2021

Diameter of the World-Wide Web

scientific article published in Nature

Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks.

scientific article published on 30 July 2007

Discrete dynamic modeling of cellular signaling networks.

scientific article published in January 2009

Discrete dynamic modeling of signal transduction networks.

scientific article published on January 2012

Discrete dynamic modeling with asynchronous update, or how to model complex systems in the absence of quantitative information

scientific article published on January 2009

Discrete dynamic network modeling of oncogenic signaling: Mechanistic insights for personalized treatment of cancer

scientific article published on 01 June 2018

Disease Dynamics in a Dynamic Social Network.

scientific article published in July 2010

Dynamic models of immune responses: what is the ideal level of detail?

scientific article published on 20 August 2010

Dynamic receptor team formation can explain the high signal transduction gain in Escherichia coli

scientific article

Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia ⬇️

scientific article published on November 10, 2011

Dynamics of complex systems: scaling laws for the period of boolean networks

scientific article published on 01 June 2000

ER+ Breast Cancer Strongly Depends on MCL-1 and BCL-xL Anti-Apoptotic Proteins

scientific article published on 2 July 2021

Edgetic perturbations to eliminate fixed-point attractors in Boolean regulatory networks

scientific article published on 01 February 2019

Effects of Noise on Ecological Invasion Processes: Bacteriophage-Mediated Competition in Bacteria

scholarly article by Jaewook Joo et al published 12 September 2006 in Journal of Statistical Physics

Effects of community structure on the dynamics of random threshold networks

scientific article published on 22 January 2013

Elementary signaling modes predict the essentiality of signal transduction network components ⬇️

scientific article published on March 22, 2011

Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites

scientific article published on 15 November 2005

Emergence of Scaling in Random Networks

scientific article

Erratum: correction: Error and attack tolerance of complex networks

scientific article published in Nature

Error and attack tolerance of complex networks

scientific article (publication date: 27 July 2000)

Experimental species introduction shapes network interactions in a plant-pollinator community

scientific article published on 26 July 2019

Exploring phospholipase C-coupled Ca(2+) signalling networks using Boolean modelling.

scientific article

General method to find the attractors of discrete dynamic models of biological systems

scientific article published on 01 April 2018

Generating super-shedders: co-infection increases bacterial load and egg production of a gastrointestinal helminth

scientific article published on 19 December 2012

Global versus local extinction in a network model of plant–pollinator communities

article

Identifying (un)controllable dynamical behavior in complex networks

scientific article published on 10 December 2018

Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome

scientific article

Inference of Signal Transduction Networks from Double Causal Evidence ⬇️

scientific article published on January 1, 2010

Introduction to focus issue: quantitative approaches to genetic networks

scientific article

Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks

scholarly article published June 2018

Jamming and fluctuations in granular drag

scientific article published on 01 May 2000

Liquid-induced transitions in granular media

scientific article published on 01 November 1999

List of Contributors

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies

scientific article published in 2021

Methods of robustness analysis for Boolean models of gene control networks.

scientific article published in July 2006

Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling

scientific article published on 28 October 2019

Modeling cascading failures in the North American power grid

Modeling systems-level regulation of host immune responses

scientific article

Motif profile dynamics and transient species in a Boolean model of mutualistic ecological communities

Multi-level modeling of light-induced stomatal opening offers new insights into its regulation by drought

scientific article

NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks

scientific article published on 22 November 2007

Near linear time algorithm to detect community structures in large-scale networks

scientific article published on 11 September 2007

Network analysis reveals cross-links of the immune pathways activated by bacteria and allergen.

scientific article published on 28 September 2011

Network inference, analysis, and modeling in systems biology

scientific article

Network model and analysis of the spread of Covid-19 with social distancing

scientific article published on 29 December 2020

Network model of immune responses reveals key effectors to single and co-infection dynamics by a respiratory bacterium and a gastrointestinal helminth.

scientific article

Network model of survival signaling in large granular lymphocyte leukemia

scholarly article

Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation

scientific article

Network models. Comment on "Control profiles of complex networks".

scientific article published in October 2014

Networks in motion

Node-independent elementary signaling modes: A measure of redundancy in Boolean signaling transduction networks

Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks

scientific article published on 16 July 2021

Plant-pollinator community network response to species invasion depends on both invader and community characteristics

article

Power-Law Distribution of the World Wide Web

scientific article published in Science

Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling

scientific article published in October 2006

Quantification of Regulation in Networks with Positive and Negative Interaction Weights

Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network

scientific article

Relationships among generalized positive feedback loops determine possible community outcomes in plant-pollinator interaction networks

scientific article published on 15 November 2021

Restoration of plant–pollinator interaction networks via species translocation

article

Robustness and fragility of Boolean models for genetic regulatory networks

scientific article published on 19 March 2005

Scale-free characteristics of random networks: the topology of the world-wide web

scientific article

Scale-free networks in cell biology

scientific article

Search in weighted complex networks

scientific article published on 30 December 2005

Self-sustaining positive feedback loops in discrete and continuous systems

scientific article published on 19 September 2018

Shaping specificity in signaling networks

scientific article published on 01 March 2007

Stabilization of perturbed Boolean network attractors through compensatory interactions

scientific article

Statistical mechanics of complex networks

scientific article

Stick-slip fluctuations in granular drag

scientific article published on 30 August 2001

Structural vulnerability of the North American power grid

scientific article (publication date: 26 February 2004)

Structure-based control of complex networks with nonlinear dynamics.

scientific article published on 27 June 2017

Studying the effect of cell division on expression patterns of the segment polarity genes

scientific article published in August 2008

Systems-level insights into cellular regulation: inferring, analysing, and modelling intracellular networks

scientific article published on March 2007

Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers

scientific article published on 31 October 2019

Target Control in Logical Models Using the Domain of Influence of Nodes.

scientific article

The large-scale organization of metabolic networks

scientific article (publication date: 5 October 2000)

Top-down network analysis characterizes hidden termite-termite interactions.

scientific article published on 03 August 2016

Topological constraints on network control profiles.

scientific article

Topological implications of negative curvature for biological and social networks ⬇️

scientific article published on 24 March 2014

Topology of Evolving Networks: Local Events and Universality

scientific article

Topology of plant-pollinator networks that are vulnerable to collapse from species extinction.

scientific article

Towards control of cellular decision-making networks in the epithelial-to-mesenchymal transition

scientific article published on 07 March 2019

USING GRAPH CONCEPTS TO UNDERSTAND THE ORGANIZATION OF COMPLEX SYSTEMS

Variation in host susceptibility and infectiousness generated by co-infection: the myxoma-Trichostrongylus retortaeformis case in wild rabbits.

scientific article published on October 2007

What keeps sandcastles standing?

scientific article published in Nature

Whole community invasions and the integration of novel ecosystems

scientific article published on 07 June 2022

Why Do CD8+ T Cells become Indifferent to Tumors: A Dynamic Modeling Approach.

scientific article

miR-200b restoration and DNA methyltransferase inhibitor block lung metastasis of mesenchymal-phenotype hepatocellular carcinoma ⬇️

scientific article published on June 11, 2012

synergy - A Python library for calculating, analyzing, and visualizing drug combination synergy

scientific article published on 22 September 2020

List of works by Réka Albert

A Guard Cell Abscisic Acid (ABA) Network Model That Captures the Stomatal Resting State

A comparative study of qualitative and quantitative dynamic models of biological regulatory networks

A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint

A framework to find the logic backbone of a biological network.

A network model for plant-pollinator community assembly

A network modeling approach to elucidate drug resistance mechanisms and predict combinatorial drug treatments in breast cancer

A new discrete dynamic model of ABA-induced stomatal closure predicts key feedback loops

A novel method for signal transduction network inference from indirect experimental evidence

A voxelwise approach to determine consensus regions-of-interest for the study of brain network plasticity

Abscisic acid-responsive guard cell metabolomes of Arabidopsis wild-type and gpa1 G-protein mutants.

An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks

Analysis of a dynamic model of guard cell signaling reveals the stability of signal propagation

Attractor analysis of asynchronous Boolean models of signal transduction networks

Bacteriophage-mediated competition in Bordetella bacteria

Biological switches and clocks

Boolean modeling in systems biology: an overview of methodology and applications ⬇️

Boolean modeling of biological regulatory networks: a methodology tutorial

Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action

Boolean modeling: a logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions

Boolean models of within-host immune interactions

Boolean network simulations for life scientists

Border control--a membrane-linked interactome of Arabidopsis

Cell Line–Specific Network Models of ER+ Breast Cancer Identify Potential PI3Kα Inhibitor Resistance Mechanisms and Drug Combinations

Cell fate reprogramming by control of intracellular network dynamics ⬇️

Combinatorial interventions inhibit TGFβ-driven epithelial-to-mesenchymal transition and support hybrid cellular phenotypes

Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells ⬇️

Compensatory interactions to stabilize multiple steady states or mitigate the effects of multiple deregulations in biological networks. ⬇️

Computationally efficient measure of topological redundancy of biological and social networks

Conserved network motifs allow protein-protein interaction prediction.

Constraint-based network model of pathogen-immune system interactions

Correlations in the degeneracy of structurally controllable topologies for networks.

Data-Driven Math Model of FLT3-ITD Acute Myeloid Leukemia Reveals Potential Therapeutic Targets

Diameter of the World-Wide Web

Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks.

Discrete dynamic modeling of cellular signaling networks.

Discrete dynamic modeling of signal transduction networks.

Discrete dynamic modeling with asynchronous update, or how to model complex systems in the absence of quantitative information

Discrete dynamic network modeling of oncogenic signaling: Mechanistic insights for personalized treatment of cancer

Disease Dynamics in a Dynamic Social Network.

Dynamic models of immune responses: what is the ideal level of detail?

Dynamic receptor team formation can explain the high signal transduction gain in Escherichia coli

Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia ⬇️

Dynamics of complex systems: scaling laws for the period of boolean networks

ER+ Breast Cancer Strongly Depends on MCL-1 and BCL-xL Anti-Apoptotic Proteins

Edgetic perturbations to eliminate fixed-point attractors in Boolean regulatory networks

Effects of Noise on Ecological Invasion Processes: Bacteriophage-Mediated Competition in Bacteria

Effects of community structure on the dynamics of random threshold networks

Elementary signaling modes predict the essentiality of signal transduction network components ⬇️

Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites

Emergence of Scaling in Random Networks

Erratum: correction: Error and attack tolerance of complex networks

Error and attack tolerance of complex networks

Experimental species introduction shapes network interactions in a plant-pollinator community

Exploring phospholipase C-coupled Ca(2+) signalling networks using Boolean modelling.

General method to find the attractors of discrete dynamic models of biological systems

Generating super-shedders: co-infection increases bacterial load and egg production of a gastrointestinal helminth

Global versus local extinction in a network model of plant–pollinator communities

Identifying (un)controllable dynamical behavior in complex networks

Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome

Inference of Signal Transduction Networks from Double Causal Evidence ⬇️

Introduction to focus issue: quantitative approaches to genetic networks

Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks

Jamming and fluctuations in granular drag

Liquid-induced transitions in granular media

List of Contributors

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies

Methods of robustness analysis for Boolean models of gene control networks.

Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling

Modeling cascading failures in the North American power grid

Modeling systems-level regulation of host immune responses

Motif profile dynamics and transient species in a Boolean model of mutualistic ecological communities

Multi-level modeling of light-induced stomatal opening offers new insights into its regulation by drought

NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks

Near linear time algorithm to detect community structures in large-scale networks

Network analysis reveals cross-links of the immune pathways activated by bacteria and allergen.

Network inference, analysis, and modeling in systems biology

Network model and analysis of the spread of Covid-19 with social distancing

Network model of immune responses reveals key effectors to single and co-infection dynamics by a respiratory bacterium and a gastrointestinal helminth.

Network model of survival signaling in large granular lymphocyte leukemia