Search filters

List of works by Russ Altman

#Science: The Potential and the Challenges of Utilizing Social Media and Other Electronic Communication Platforms in Health Care

scientific article published on 13 September 2019

2010 Translational bioinformatics year in review ⬇️

scientific article published on July 1, 2011

3D deep convolutional neural networks for amino acid environment similarity analysis

scientific article

A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).

scientific article

A Literature-Based Knowledge Graph Embedding Method for Identifying Drug Repurposing Opportunities in Rare Diseases ⬇️

scientific article published on 01 January 2020

A PRObabilistic Pathway Score (PROPS) for Classification with Applications to Inflammatory Bowel Disease

scientific article published on 18 October 2017

A call for the creation of personalized medicine databases

scientific article published in January 2006

A deep learning framework to predict binding preference of RNA constituents on protein surface

scientific article published on 30 October 2019

A dynamic map for learning, communicating, navigating and improving therapeutic development

scientific article published on 22 December 2017

A functional analysis of disease-associated mutations in the androgen receptor gene

scientific article

A general framework for dose optimization.

scientific article published on 14 November 2009

A global network of biomedical relationships derived from text

scientific article published on 27 February 2018

A literature-based method for assessing the functional coherence of a gene group

scientific article published on February 2003

A method for inferring medical diagnoses from patient similarities

scientific article

A new disease-specific machine learning approach for the prediction of cancer-causing missense variants

scientific article published on 7 July 2011

A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports

scientific article published on 14 June 2011

A personalized and automated dbSNP surveillance system.

scientific article

A research roadmap for next-generation sequencing informatics

scientific article published on April 2016

A resource to acquire and summarize pharmacogenetics knowledge in the literature

scientific article published on 01 January 2004

A statistical approach to scanning the biomedical literature for pharmacogenetics knowledge

scientific article

A twentieth anniversary tribute to PSB.

scientific article published in January 2015

Achieving high-sensitivity for clinical applications using augmented exome sequencing

scientific article

Aminoglycoside interactions and impacts on the eukaryotic ribosome.

scientific article published on 5 December 2017

An integrative method for scoring candidate genes from association studies: application to warfarin dosing

scientific article published on 28 October 2010

An ontology for Autism Spectrum Disorder (ASD) to infer ASD phenotypes from Autism Diagnostic Interview-Revised data

scientific article

Analyzing the vast coronavirus literature with CoronaCentral

scientific article published on 22 December 2020

Antiestrogen pathway (aromatase inhibitor)

scientific article published on July 2009

Application of a Dynamic Map for Learning, Communicating, Navigating, and Improving Therapeutic Development

scientific article published on 22 December 2017

Artificial intelligence (AI) systems for interpreting complex medical datasets.

scientific article

Assessment of the Radiation Effects of Cardiac CT Angiography Using Protein and Genetic Biomarkers

scientific article published on 15 July 2015

Associating Genes with Gene Ontology Codes Using a Maximum Entropy Analysis of Biomedical Literature ⬇️

scientific article published on January 1, 2002

Association of Omics Features with Histopathology Patterns in Lung Adenocarcinoma.

scientific article published on 13 November 2017

Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder

scientific article published on 6 March 2018

Atrial Fibrillation Burden Signature and Near-Term Prediction of Stroke: A Machine Learning Analysis

scientific article published on 15 October 2019

Automated physician order recommendations and outcome predictions by data-mining electronic medical records

scientific article

Automating data acquisition into ontologies from pharmacogenetics relational data sources using declarative object definitions and XML.

scientific article

Biocomputing 2010

Biocomputing 2011

Bioinformatics and variability in drug response: a protein structural perspective

scientific article

Bioinformatics challenges for personalized medicine

scientific article

Biological and functional relevance of CASP predictions.

scientific article

Biomarkers: Delivering on the expectation of molecularly driven, quantitative health

scientific article published in January 2017

Biomedical informatics training at Stanford in the 21st century

scientific article

Biomedical term mapping databases

scientific article

Bisphosphonates pathway

scientific article

Building successful biological databases.

scientific article

Building the next generation of quantitative biologists

scientific article published on January 2014

CAMPAIGN: an open-source library of GPU-accelerated data clustering algorithms ⬇️

scientific article published on June 27, 2011

CYP2D6 genotype and adjuvant tamoxifen: meta-analysis of heterogeneous study populations

scientific article published on 23 September 2013

Celecoxib pathways: pharmacokinetics and pharmacodynamics

scientific article published in April 2012

Challenges for Training Translational Researchers in the Era of Ubiquitous Data

scientific article published on 14 November 2017

Challenges for biomedical informatics and pharmacogenomics

scientific article

Challenges in the clinical application of whole-genome sequencing

scientific article published on 29 April 2010

Chapter 7: Pharmacogenomics

scientific article

Chemical reaction vector embeddings: towards predicting drug metabolism in the human gut microbiome

scientific article published in January 2018

Chemically related 4,5-linked aminoglycoside antibiotics drive subunit rotation in opposite directions

scientific article published on 30 July 2015

Choosing SNPs using feature selection

scientific article

Choosing SNPs using feature selection.

scientific article

Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks

scientific article published on 01 May 2020

Clinical assessment incorporating a personal genome

scientific article

Clinical implementation of pharmacogenomics: overcoming genetic exceptionalism

scientific article

Clinical interpretation and implications of whole-genome sequencing

scientific article published in March 2014

Clopidogrel pathway

scientific article published on July 2010

Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways

scientific article published on 15 December 2013

Clustering protein environments for function prediction: finding PROSITE motifs in 3D

scientific article published on 22 May 2007

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

scientific article

Codeine and morphine pathway

scientific article published in July 2009

Coherent functional modules improve transcription factor target identification, cooperativity prediction, and disease association

scientific article

Cohort-specific imputation of gene expression improves prediction of warfarin dose for African Americans

scientific article published on 24 November 2017

Collective judgment predicts disease-associated single nucleotide variants

scientific article

Combining molecular dynamics and machine learning to improve protein function recognition

scientific article published on January 2008

Complexities of managing biomedical information

scientific article published in January 2003

Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery

scientific article published on 12 April 2004

Computational analysis of kinase inhibitor selectivity using structural knowledge

scientific article published on 01 January 2019

Computing disease incidence, prevalence and comorbidity from electronic medical records

scientific article published on 4 August 2016

Confidentiality in genome research

scientific article published on 01 July 2006

Constrained Global Optimization for Estimating Molecular Structure from Atomic Distances ⬇️

scientific article (publication date: October 2001)

Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants

scientific article

Construction of disease-specific cytokine profiles by associating disease genes with immune responses

scientific article published on 11 April 2022

Content-based microarray search using differential expression profiles ⬇️

scientific article published on December 21, 2010

Cooperative transcription factor associations discovered using regulatory variation

scientific article

Coplanar and coaxial orientations of RNA bases and helices

scientific article published on 5 March 2007

Correction: Time to Organize the Bioinformatics Resourceome

scientific article

Corrigendum: Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways

scientific article published on 01 September 2015

Creating an online dictionary of abbreviations from MEDLINE.

scientific article published on November 2002

Current Progress in Bioinformatics 2016.

scientific article published on 30 November 2015

Current progress in bioinformatics 2007.

scientific article published on 27 August 2007

Cytochrome P450 2C9-CYP2C9.

scientific article published on April 2010

Cytochrome P450 2D6.

scientific article published on July 2009

DYNAMICALLY EVOLVING CLINICAL PRACTICES AND IMPLICATIONS FOR PREDICTING MEDICAL DECISIONS.

scientific article

Data re-identification: societal safeguards

scientific article published on March 2013

Data-Mining Electronic Medical Records for Clinical Order Recommendations: Wisdom of the Crowd or Tyranny of the Mob?

scientific article

Data-driven human transcriptomic modules determined by independent component analysis

scholarly article by Weizhuang Zhou published in September 2018

Data-driven prediction of drug effects and interactions

scientific article

Databases in the area of pharmacogenetics

scientific article

Decaying relevance of clinical data towards future decisions in data-driven inpatient clinical order sets

scientific article

Defining bioinformatics and structural bioinformatics

scientific article

Determining the genomic locations of repetitive DNA sequences with a whole-genome microarray: IS6110 in Mycobacterium tuberculosis

scientific article published on June 2002

Development of an automated assessment tool for MedWatch reports in the FDA adverse event reporting system

scientific article

Direct evidence of an elongation factor-Tu/Ts·GTP·Aminoacyl-tRNA quaternary complex.

scientific article

Discovering Novel Cell Types across Heterogeneous Single-cell Experiments

scientific article

Discovery and explanation of drug-drug interactions via text mining ⬇️

scientific article published on January 1, 2012

Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding

scholarly article

Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A

scientific article published on 28 May 2015

Doxorubicin pathways: pharmacodynamics and adverse effects

scientific article

Drug Targets for Plasmodium falciparum: a post-genomic review/survey

scientific article

Dynamics of P-type ATPase transport revealed by single-molecule FRET.

scientific article published on 8 November 2017

ERASE: a novel surface reconditioning strategy for single-molecule experiments

scientific article published on 01 February 2019

Editorial: Current progress in Bioinformatics 2010

scientific article published on 01 January 2010

Editorial: Current progress in Bioinformatics 2012 ⬇️

scientific article published on 01 July 2012

Effect of CYP4F2, VKORC1, and CYP2C9 in Influencing Coumarin Dose: A Single-Patient Data Meta-Analysis in More Than 15,000 Individuals

scientific article published on 17 February 2019

Electronic tuning of self-healing fluorophores for live-cell and single-molecule imaging.

scientific article published on 07 September 2016

Enabling the curation of your pharmacogenetic study

scientific article

Engineering a Prototypic P-type ATPase Listeria monocytogenes Ca(2+)-ATPase 1 for Single-Molecule FRET Studies.

scientific article published on 8 August 2016

Environmental and state-level regulatory factors affect the incidence of autism and intellectual disability

scientific article

Essential characteristics of pharmacogenomics study publications

Estimation of Maximum Recommended Therapeutic Dose Using Predicted Promiscuity and Potency

scientific article published on 13 October 2016

Etoposide pathway

scientific article published on July 2009

Eukaryotic regulatory element conservation analysis and identification using comparative genomics

scientific article published on March 2004

Evidence for Clinical Implementation of Pharmacogenomics in Cardiac Drugs.

scientific article published on June 2015

Examining the Use of Real-World Evidence in the Regulatory Process

scientific article published on 14 November 2019

Expanding a radiology lexicon using contextual patterns in radiology reports

scientific article published on 10 January 2018

Extending TextAE for annotation of non-contiguous entities

scientific article published on 15 June 2020

Extending and evaluating a warfarin dosing algorithm that includes CYP4F2 and pooled rare variants of CYP2C9.

scientific article

Extracting and characterizing gene-drug relationships from the literature

scientific article published in September 2004

Extracting chemical reactions from text using Snorkel

scientific article published on 27 May 2020

Extracting subject demographic information from abstracts of randomized clinical trial reports

scientific article published on January 2007

Extraction of genotype-phenotype-drug relationships from text: from entity recognition to bioinformatics application

scientific article published on January 2010

FEATURE

framework and dataset for protein function annotation

Finding haplotype tagging SNPs by use of principal components analysis

scientific article

Flexible Analog Search with Kernel PCA Embedded Molecule Vectors

scientific article published on 24 March 2017

From pharmacogenomic knowledge acquisition to clinical applications: the PharmGKB as a clinical pharmacogenomic biomarker resource

scientific article

Functional Dynamics within the Human Ribosome Regulate the Rate of Active Protein Synthesis.

scientific article

GAPSCORE: finding gene and protein names one word at a time

scientific article published in January 2004

GRep: Gene Set Representation via Gaussian Embedding

article

Gaussian Embedding for Large-scale Gene Set Analysis

scientific article published on 15 June 2020

GeneDive: A gene interaction search and visualization tool to facilitate precision medicine

scientific article

Genetic nondiscrimination legislation: a critical prerequisite for pharmacogenomics data sharing

scientific article

Genetic sequence data for pharmacogenomics.

scientific article

Genetic variant in folate homeostasis is associated with lower warfarin dose in African Americans.

scientific article

Genetic variants associated with warfarin dose in African-American individuals: a genome-wide association study

scientific article published on 05 June 2013

Genetics. Genomic research and human subject privacy

scientific article

Genome wide analysis of drug-induced torsades de pointes: lack of common variants with large effect sizes

scientific article (publication date: 2013)

Genome-wide and candidate gene approaches of clopidogrel efficacy using pharmacodynamic and clinical end points-Rationale and design of the International Clopidogrel Pharmacogenomics Consortium (ICPC).

scientific article published on 17 December 2017

Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC)

scientific article published on 30 May 2020

Genomics in the clinic: ethical and policy challenges in clinical next-generation sequencing programs at early adopter USA institutions

scientific article published on 01 June 2015

Genotype-guided dosing of vitamin K antagonists

scientific article published on May 2014

Geographic Distribution of US Cohorts Used to Train Deep Learning Algorithms

scientific article published on 01 September 2020

Graph Convolutional Neural Networks for Predicting Drug-Target Interactions

scientific article published on 16 October 2019

Graphical style sheets

scientific article published on 13 November 2003

Guidelines for investigating causality of sequence variants in human disease

scientific article

HIV-1 Env trimer opens through an asymmetric intermediate in which individual protomers adopt distinct conformations

scientific article published on 21 March 2018

Health-information altruists--a potentially critical resource

scientific article published on 01 November 2005

High Resolution Prediction of Calcium-Binding Sites in 3D Protein Structures Using FEATURE.

scientific article published on 30 July 2015

High precision prediction of functional sites in protein structures

scientific article

High precision protein functional site detection using 3D convolutional neural networks.

scientific article published in May 2019

High-resolution structure of the Escherichia coli ribosome.

scientific article published on 16 March 2015

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

scientific article published on 13 May 2008

Homology Modeling of TMPRSS2 Yields Candidate Drugs That May Inhibit Entry of SARS-CoV-2 into Human Cells

scientific article published on 20 March 2020

Homology Modeling of TMPRSS2 Yields Candidate Drugs That May Inhibit Entry of SARS-CoV-2 into Human Cells

Human Germline CRISPR-Cas Modification: Toward a Regulatory Framework

scientific article

Human induced pluripotent stem cell-derived cardiomyocytes recapitulate the predilection of breast cancer patients to doxorubicin-induced cardiotoxicity

scientific article published on 18 April 2016

Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay

scientific article

Identification of recurring protein structure microenvironments and discovery of novel functional sites around CYS residues

scientific article

Identifying phenotypic signatures of neuropsychiatric disorders from electronic medical records ⬇️

scientific article published on August 16, 2013

Improving structure-based function prediction using molecular dynamics

scientific article

Improving the explainability of Random Forest classifier - user centered approach.

scientific article published in January 2018

Improving the prediction of disease-related variants using protein three-dimensional structure

scientific article

Improving the prediction of pharmacogenes using text-derived drug-gene relationships

scientific article

Imputing gene expression to maximize platform compatibility

scientific article

Independent component analysis: mining microarray data for fundamental human gene expression modules

scientific article

Indexing pharmacogenetic knowledge on the World Wide Web.

scientific article published in January 2003

Inferring the semantic relationships of words within an ontology using random indexing: applications to pharmacogenomics

scientific article

Informatics confronts drug–drug interactions ⬇️

scientific article published on February 13, 2013

Informatics: Make sense of health data

scientific article

Integrating large-scale genotype and phenotype data

scientific article

Integration and publication of heterogeneous text-mined relationships on the Semantic Web ⬇️

scientific article (publication date: 17 May 2011)

Interpreting the CYP2D6 results from the International Tamoxifen Pharmacogenetics Consortium

scientific article

Interpretome: a freely available, modular, and secure personal genome interpretation engine

scientific article published on January 2012

Intra-molecular triplet energy transfer is a general approach to improve organic fluorophore photostability

scientific article published on 23 December 2015

Introduction to Translational Bioinformatics Collection ⬇️

scientific article published on December 27, 2012

Investigating hypoxic tumor physiology through gene expression patterns

scientific article

KCNH2 pharmacogenomics summary

scientific article published on December 2010

Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).

scientific article published on January 2003

Knowledge-based fragment binding prediction

scientific article (publication date: April 2014)

Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models

scientific article published on 07 October 2009

Large scale study of protein domain distribution in the context of alternative splicing

scientific article

Large-scale extraction of gene interactions from full-text literature using DeepDive

scientific article

Large-scale labeling and assessment of sex bias in publicly available expression data

scientific article published on 30 March 2021

Learning the Structure of Biomedical Relationships from Unstructured Text

scientific article (publication date: July 2015)

Leveraging the Cell Ontology to classify unseen cell types

scientific article

Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule

scientific article published on 30 March 2006

M-BISON: microarray-based integration of data sources using networks

scientific article

MARS: discovering novel cell types across heterogeneous single-cell experiments

scientific article published on 19 October 2020

MEDICINE. Personalization in practice

scientific article

MScanner: a classifier for retrieving Medline citations

scientific article

Machine learning in chemoinformatics and drug discovery.

scientific article published on 8 May 2018

Mendelian Disease Associations Reveal Novel Insights into Inflammatory Bowel Disease.

scientific article published in February 2018

Metformin pathways: pharmacokinetics and pharmacodynamics

scientific article published on November 2012

Mice lacking the β2 adrenergic receptor have a unique genetic profile before and after focal brain ischaemia

scientific article

Microenvironment analysis and identification of magnesium binding sites in RNA

scientific article

Mining biochemical information: lessons taught by the ribosome

scientific article

Mining for clinical expertise in (undocumented) order sets to power an order suggestion system

scientific article published on 18 March 2013

Modeling and analyzing biomedical processes using workflow/Petri Net models and tools

scientific article published in January 2004

Modelling biological processes using workflow and Petri Net models

scientific article published in June 2002

Multiperspective smFRET reveals rate-determining late intermediates of ribosomal translocation.

scientific article published on 29 February 2016

MutDB: annotating human variation with functionally relevant data.

scientific article

NIH revamp: real issue is resources

scientific article published in Nature

Negamycin induces translational stalling and miscoding by binding to the small subunit head domain of the Escherichia coli ribosome

scientific article

Neurotoxicity of generic anesthesia agents in infants and children: an orphan research question in search of a sponsor

scientific article published in April 2015

New feature: pathways and important genes from PharmGKB

scientific article published on June 2009

Nonparametric methods for identifying differentially expressed genes in microarray data

scientific article

On the Opportunities and Risks of Foundation Models ⬇️

scientific article

Ontology development for a pharmacogenetics knowledge base.

scientific article published on January 2002

Opportunities for developing therapies for rare genetic diseases: focus on gain-of-function and allostery.

scientific article published on 17 April 2017

OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases

scientific article published on 27 October 2020

OrderRex: clinical order decision support and outcome predictions by data-mining electronic medical records

scientific article published on 21 July 2015

PATH-SCAN: a reporting tool for identifying clinically actionable variants

scientific article

PGxMine: Text mining for curation of PharmGKB

scientific article published on 01 January 2020

PathFX provides mechanistic insights into drug efficacy and safety for regulatory review and therapeutic development

article

PathFXweb: a web application for identifying drug safety and efficacy phenotypes

scientific article published on 01 November 2019

Pathway analysis of genome-wide data improves warfarin dose prediction

scientific article

Pathway and network embedding methods for prioritizing psychiatric drugs

scientific article published on 01 January 2020

Personal omics profiling reveals dynamic molecular and medical phenotypes

scientific article (publication date: 16 March 2012)

PharmGKB and the International Warfarin Pharmacogenetics Consortium: the changing role for pharmacogenomic databases and single-drug pharmacogenetics

scientific article

PharmGKB summary: Diuretics pathway, pharmacodynamics

scientific article

PharmGKB summary: Efavirenz pathway, pharmacokinetics

scientific article published on July 2015

PharmGKB summary: Macrolide antibiotic pathway, pharmacokinetics/pharmacodynamics

scientific article published on 31 January 2017

PharmGKB summary: Ondansetron and tropisetron pathways, pharmacokinetics and pharmacodynamics

PharmGKB summary: abacavir pathway

scientific article

PharmGKB summary: atazanavir pathway, pharmacokinetics/pharmacodynamics

PharmGKB summary: caffeine pathway

scientific article

PharmGKB summary: carbamazepine pathway

scientific article

PharmGKB summary: citalopram pharmacokinetics pathway

scientific article

PharmGKB summary: clobazam pathway, pharmacokinetics

scientific article published in April 2018

PharmGKB summary: clozapine pathway, pharmacokinetics

article published in 2018

PharmGKB summary: cyclosporine and tacrolimus pathways

scientific article

PharmGKB summary: cytochrome P450, family 2, subfamily J, polypeptide 2: CYP2J2.

scientific article published on May 2011

PharmGKB summary: dopamine receptor D2

scientific article

PharmGKB summary: fluoropyrimidine pathways

scientific article published on April 2011

PharmGKB summary: gemcitabine pathway

scientific article

PharmGKB summary: ibuprofen pathways.

scientific article

PharmGKB summary: ifosfamide pathways, pharmacokinetics and pharmacodynamics

scientific article

PharmGKB summary: isoniazid pathway, pharmacokinetics.

scientific article published on 26 May 2016

PharmGKB summary: ivacaftor pathway, pharmacokinetics/pharmacodynamics.

scientific article published on 15 September 2016

PharmGKB summary: lamotrigine pathway, pharmacokinetics and pharmacodynamics

scientific article published on 16 March 2020

PharmGKB summary: methotrexate pathway.

scientific article

PharmGKB summary: methylene blue pathway

scientific article published on September 2013

PharmGKB summary: methylphenidate pathway, pharmacokinetics/pharmacodynamics

scientific article published on 01 August 2019

PharmGKB summary: mycophenolic acid pathway

scientific article published on January 2014

PharmGKB summary: oxycodone pathway, pharmacokinetics

scientific article published on 01 October 2018

PharmGKB summary: pathways of acetaminophen metabolism at the therapeutic versus toxic doses

scientific article published in August 2015

PharmGKB summary: pazopanib pathway, pharmacokinetics

scientific article

PharmGKB summary: peginterferon-α pathway

scientific article published on September 2015

PharmGKB summary: phenytoin pathway

scientific article

PharmGKB summary: sertraline pathway, pharmacokinetics

scientific article published on 01 February 2020

PharmGKB summary: sorafenib pathways

scientific article published on 30 March 2017

PharmGKB summary: succinylcholine pathway, pharmacokinetics/pharmacodynamics

scientific article

PharmGKB summary: tamoxifen pathway, pharmacokinetics

scientific article published in November 2013

PharmGKB summary: tramadol pathway

scientific article published on July 2014

PharmGKB summary: uric acid-lowering drugs pathway, pharmacodynamics

scientific article

PharmGKB summary: venlafaxine pathway

scientific article published on January 2014

PharmGKB summary: very important pharmacogene information for ABCG2.

scientific article published on 29 August 2017

PharmGKB summary: very important pharmacogene information for CACNA1S

scientific article published on 01 February 2020

PharmGKB summary: very important pharmacogene information for CFTR

scientific article

PharmGKB summary: very important pharmacogene information for CYP1A2.

scientific article

PharmGKB summary: very important pharmacogene information for CYP2B6.

scientific article published on August 2010

PharmGKB summary: very important pharmacogene information for CYP3A5.

scientific article published on July 2012

PharmGKB summary: very important pharmacogene information for CYP4F2

scientific article

PharmGKB summary: very important pharmacogene information for G6PD.

scientific article

PharmGKB summary: very important pharmacogene information for GSTT1.

scientific article published on August 2012

PharmGKB summary: very important pharmacogene information for MT-RNR1.

scientific article published on 20 September 2016

PharmGKB summary: very important pharmacogene information for N-acetyltransferase 2

scientific article

PharmGKB summary: very important pharmacogene information for PTGS2.

scientific article

PharmGKB summary: very important pharmacogene information for RYR1

scientific article

PharmGKB summary: very important pharmacogene information for SLC22A1

scientific article

PharmGKB summary: very important pharmacogene information for UGT1A1

scientific article

PharmGKB summary: very important pharmacogene information for angiotensin-converting enzyme

scientific article

PharmGKB summary: very important pharmacogene information for cytochrome P-450, family 2, subfamily A, polypeptide 6

scientific article

PharmGKB summary: very important pharmacogene information for cytochrome P450, family 2, subfamily C, polypeptide 19.

scientific article

PharmGKB summary: very important pharmacogene information for cytochrome P450, family 2, subfamily C, polypeptide 8.

scientific article published on December 2013

PharmGKB summary: very important pharmacogene information for human leukocyte antigen B.

scientific article

PharmGKB summary: very important pharmacogene information for the epidermal growth factor receptor

scientific article

PharmGKB summary: voriconazole pathway, pharmacokinetics

scientific article

PharmGKB summary: zidovudine pathway

scientific article published on December 2012

PharmGKB tutorial for pharmacogenomics of drugs potentially used in the context of COVID-19

scientific article published on 26 September 2020

PharmGKB very important pharmacogene: SLCO1B1.

scientific article published on March 2010

PharmGKB: A worldwide resource for pharmacogenomic information.

scientific article

PharmGKB: The Pharmacogenomics Knowledge Base ⬇️

scientific article published on January 1, 2013

PharmGKB: a logical home for knowledge relating genotype to drug response phenotype

scientific article

PharmGKB: an integrated resource of pharmacogenomic data and knowledge

scientific article

PharmGKB: the Pharmacogenetics Knowledge Base ⬇️

scientific article published on January 1, 2002

PharmGKB: the pharmacogenetics and pharmacogenomics knowledge base

scientific article

PharmGKB: understanding the effects of individual genetic variants

scientific article (publication date: 2008)

PharmGKB: very important pharmacogene--HMGCR.

scientific article

Pharmacogenetics at Scale: An Analysis of the UK Biobank

scientific article published on 25 November 2020

Pharmacogenomic Polygenic Response Score Predicts Ischemic Events and Cardiovascular Mortality in Clopidogrel-Treated Patients

scientific article published on 03 September 2019

Pharmacogenomics Clinical Annotation Tool (PharmCAT)

scientific article published on 17 September 2019

Pharmacogenomics and big genomic data: from lab to clinic and back again

scientific article published on 4 April 2018

Pharmacogenomics and bioinformatics: PharmGKB.

scientific article

Pharmacogenomics in Asian subpopulations and impacts on commonly prescribed medications

scientific article published on 26 February 2020

Pharmacogenomics in dermatology: tools for understanding gene-drug associations

article

Pharmacogenomics-Based Point-of-Care Clinical Decision Support Significantly Alters Drug Prescribing

scientific article published on 11 April 2017

Pharmacogenomics: The relevance of emerging genotyping technologies

scientific article published on 01 March 2006

Pharmacogenomics: challenges and opportunities

scientific article published on November 2006

Pharmacogenomics: will the promise be fulfilled?

scientific article

Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text

scientific article

Phased whole-genome genetic risk in a family quartet using a major allele reference sequence

scientific article

Platelet aggregation pathway

scientific article published on August 2011

Platinum pathway

scientific article published on July 2009

Pocket similarity identifies selective estrogen receptor modulators as microtubule modulators at the taxane site

article published in 2019

Population-specific imputation of gene expression improves prediction of pharmacogenomic traits for African Americans

article

Population-specific single-nucleotide polymorphism confers increased risk of venous thromboembolism in African Americans

scientific article published on 21 June 2016

Potential Adverse Effects of Anesthesia in Children--Reply

scientific article published in July 2015

Potential T-cell and B-cell Epitopes of 2019-nCoV

scientific article

Predicting HLA class II antigen presentation through integrated deep learning

scientific article published on 14 October 2019

Predicting RNA structure by multiple template homology modeling

scientific article

Predicting allosteric communication in myosin via a pathway of conserved residues

scientific article

Predicting cancer drug response: advancing the DREAM.

scientific article published on 26 January 2015

Predicting drug side-effects by chemical systems biology

scientific article published on 02 September 2009

Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets

scientific article

Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features

scientific article published on 16 August 2016

Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges

scientific article published on 24 June 2019

Prediction of calcium-binding sites by combining loop-modeling with machine learning

scientific article

Promises of text processing: natural language processing meets AI.

scientific article published in October 2002

Pseudoknot Formation Seeds the Twister Ribozyme Cleavage Reaction Coordinate

scientific article published on 09 June 2017

RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways

scientific article

RNAML: a standard syntax for exchanging RNA information.

scientific article

Ranking adverse drug reactions with crowdsourcing.

scientific article

Recent Progress in Automatically Extracting Information from the Pharmacogenomic Literature ⬇️

scientific article published on October 1, 2010

Recognizing complex, asymmetric functional sites in protein structures using a Bayesian scoring function

scientific article published in April 2003

Reconstruction of the mouse otocyst and early neuroblast lineage at single-cell resolution

scientific article

RedMed: Extending drug lexicons for social media applications

scientific article published on 15 October 2019

Relating Essential Proteins to Drug Side-Effects Using Canonical Component Analysis: A Structure-Based Approach

scientific article

Remote Thioredoxin Recognition Using Evolutionary Conservation and Structural Dynamics ⬇️

scientific article published on April 13, 2011

Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models

scientific article

Research Projects Supported by the University of California, San Francisco-Stanford Center of Excellence in Regulatory Science and Innovation

scientific article published on 17 February 2019

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors

scientific article published on 05 July 2016

Response to 'Use of an algorithm for identifying hidden drug-drug interactions in adverse event reports' by Gooden et al.

scientific article published on 30 January 2013

Response to Open Peer Commentaries on "Human Germline CRISPR-Cas Modification: Toward a Regulatory Framework".

scientific article published in October 2016

Retro-2 protects cells from ricin toxicity by inhibiting ASNA1-mediated ER targeting and insertion of tail-anchored proteins

scientific article published on 01 November 2019

Reversals and limitations on high-intensity, life-sustaining treatments

scientific article published on 28 February 2018

Ribosomal dynamics inferred from variations in experimental measurements

scientific article

Robotics: Ethics of artificial intelligence.

scientific article

Robust recognition of zinc binding sites in proteins.

scientific article

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

scientific article

SEPARATING THE CAUSES AND CONSEQUENCES IN DISEASE TRANSCRIPTOME.

scientific article published on January 2016

SLC19A1 pharmacogenomics summary ⬇️

scientific article published on November 1, 2010

STAMS: STRING-assisted module search for genome wide association studies and application to autism

scientific article published on 19 August 2016

Scientific considerations for global drug development

scientific article published on 01 July 2020

Selective serotonin reuptake inhibitors pathway

scientific article published on November 2009

Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments

scientific article published on January 2008

Sequence to Medical Phenotypes: A Framework for Interpretation of Human Whole Genome DNA Sequence Data

scientific article

Sex-specific genetic effects across biomarkers

scientific article published on 01 September 2020

Shallow Representation Learning via Kernel PCA Improves QSAR Modelability

scientific article published on 20 July 2017

Simbios: an NIH national center for physics-based simulation of biological structures

scientific article published on 10 November 2011

Single-molecule imaging of non-equilibrium molecular ensembles on the millisecond timescale

scientific article

Standardized Biogeographic Grouping System for Annotating Populations in Pharmacogenetic Research

scholarly article by Rachel Huddart et al published May 2019 in Clinical Pharmacology & Therapeutics

Structural characterization of proteins using residue environments

scientific article published on December 2005

Structural inference of native and partially folded RNA by high-throughput contact mapping

scholarly article

Structural insights into pre-translocation ribosome motions

scientific article

Systematic target function annotation of human transcription factors

scientific article published on 10 January 2018

Taxane pathway ⬇️

scientific article published on December 1, 2009

Teaching computers to read the pharmacogenomics literature ... so you don't have to

scientific article

Text mining for biology - the way forward: opinions from leading scientists

scientific article (publication date: 2008)

The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications

scientific article

The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response

scientific article published on November 2016

The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.

scientific article published on 21 April 2015

The International Society for Computational Biology 10th Anniversary

scientific article

The Pharmacogenomics Research Network Translational Pharmacogenetics Program: overcoming challenges of real-world implementation

scientific article published on 19 March 2013

The Pioglitazone Trek via Human PPAR Gamma: From Discovery to a Medicine at the FDA and Beyond

scholarly article by Pallavi R Devchand et al published 2018 in Frontiers in Pharmacology

The RNA Ontology Consortium: an open invitation to the RNA community

scientific article published on 16 February 2006

The SeqFEATURE library of 3D functional site models: comparison to existing methods and applications to protein function annotation

scientific article

The Simbios National Center: Systems Biology in Motion

scientific article

The association of obesity and coronary artery disease genes with response to SSRIs treatment in major depression

article

The bright future of single-molecule fluorescence imaging

scientific article (publication date: June 2014)

The chemical genomic portrait of yeast: uncovering a phenotype for all genes

scientific article

The computational analysis of scientific literature to define and recognize gene expression clusters

scientific article

The ethics of characterizing difference: guiding principles on using racial categories in human genetics

scientific article

The incidentalome: a threat to genomic medicine

scientific article

The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge

scientific article

The utility of general purpose versus specialty clinical databases for research: warfarin dose estimation from extracted clinical variables

scientific article

Thiopurine pathway

scientific article

Time to organize the bioinformatics resourceome

scientific article

Tools for loading MEDLINE into a local relational database

scientific article

Towards Clinical Bioinformatics: Redux 2015.

scientific article published on 20 May 2016

Towards a cytokine-cell interaction knowledgebase of the adaptive immune system

scientific article published on January 2009

Training the next generation of informaticians: the impact of "BISTI" and bioinformatics--a report from the American College of Medical Informatics

scientific article published on 05 February 2004

Training the next generation of quantitative biologists in the era of big data

Transfer learning enables prediction of CYP2D6 haplotype function

scientific article published on 02 November 2020

Transport domain unlocking sets the uptake rate of an aspartate transporter.

scientific article

Turning limited experimental information into 3D models of RNA

scientific article

Unifying single-cell annotations based on the Cell Ontology ⬇️

report published in 2019

Unifying single-cell annotations based on the Cell Ontology

Unmet needs: Research helps regulators do their jobs

scientific article

Using "big data" to dissect clinical heterogeneity

scientific article published in January 2015

Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding ⬇️

scientific article published on December 29, 2011

Using ODIN for a PharmGKB revalidation experiment

scientific article published on 23 April 2012

Using Petri Net tools to study properties and dynamics of biological systems

scientific article

Using binning to maintain confidentiality of medical data

scientific article

Using molecular features of xenobiotics to predict hepatic gene expression response

scientific article published on 02 October 2013

Using pre-existing microarray datasets to increase experimental power: application to insulin resistance

scientific article

Using surface envelopes for discrimination of molecular models

scientific article published in January 2004

Using surface envelopes to constrain molecular modeling

scientific article

Using text analysis to identify functionally coherent gene groups

scientific article published on October 2002

Using text to build semantic networks for pharmacogenomics

scientific article

VKORC1 pharmacogenomics summary

scientific article published on October 2010

Valproic acid pathway: pharmacokinetics and pharmacodynamics

scientific article

Variant Interpretation in Current Pharmacogenetic Testing

scientific article published on 31 October 2020

Variations in the binding pocket of an inhibitor of the bacterial division protein FtsZ across genotypes and species

scientific article

Vascular endothelial growth factor pathway

scientific article published on May 2010

Very important pharmacogene summary ADRB2.

scientific article

Very important pharmacogene summary for VDR.

scientific article published on October 2012

Very important pharmacogene summary: ABCB1 (MDR1, P-glycoprotein)

scientific article

Very important pharmacogene summary: sulfotransferase 1A1.

scientific article published on June 2009

Very important pharmacogene summary: thiopurine S-methyltransferase

scientific article

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation

scientific article

Web-scale pharmacovigilance: listening to signals from the crowd

scientific article

WebFEATURE: An interactive web tool for identifying and visualizing functional sites on macromolecular structures

scientific article

Wiring Minds

scientific article published on 01 December 2019

Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.

scientific article published on 21 June 2017

iTools: a framework for classification, categorization and integration of computational biology resources

scientific article published in 2008

Paulina is supported by:

About Paulina

Help