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List of works by A Alizadeh

A mathematical model of ctDNA shedding predicts tumor detection size

scientific article published on 11 December 2020

AID is expressed in germinal center B-cell-like and activated B-cell-like diffuse large-cell lymphomas and is not correlated with intraclonal heterogeneity.

scientific article published in November 2004

Absolute lymphocyte count at day 28 independently predicts event-free and overall survival in adults with newly diagnosed acute lymphoblastic leukemia.

scientific article published on 22 June 2012

An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage.

scientific article

Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens.

scientific article published on 22 March 2017

Association of a leukemic stem cell gene expression signature with clinical outcomes in acute myeloid leukemia.

scientific article

B-cell lymphomas present immunoglobulin neoantigens

scientific article published on 13 December 2018

B-cell signaling networks reveal a negative prognostic human lymphoma cell subset that emerges during tumor progression

scientific article

CD137 is expressed in follicular dendritic cell tumors and in classical Hodgkin and T-cell lymphomas: diagnostic and therapeutic implications.

scientific article

CD137 stimulation enhances the antilymphoma activity of anti-CD20 antibodies ⬇️

scientific article published on December 30, 2010

CD47 is an adverse prognostic factor and therapeutic antibody target on human acute myeloid leukemia stem cells.

scientific article published on July 2009

Calreticulin Is the Dominant Pro-Phagocytic Signal on Multiple Human Cancers and Is Counterbalanced by CD47 ⬇️

scientific article published on December 22, 2010

Circulating Tumor DNA Dynamics Predict Benefit from Consolidation Immunotherapy in Locally Advanced Non-Small Cell Lung Cancer

scientific article published on 20 January 2020

Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma

scientific article published on 20 August 2018

Circulating tumor DNA analysis to assess risk of progression after long-term response to PD-(L)1 blockade in NSCLC

scientific article published on 11 February 2020

Circulating tumour DNA profiling reveals heterogeneity of EGFR inhibitor resistance mechanisms in lung cancer patients.

scientific article published on 10 June 2016

Common progenitor cells in mature B-cell malignancies: implications for therapy

scientific article published on July 2014

Correction: Specific post-translational histone modifications of neutrophil extracellular traps as immunogens and potential targets of lupus autoantibodies

Corrigendum: Organocatalytic removal of formaldehyde adducts from RNA and DNA bases

scientific article published on 01 December 2015

Crebbp loss cooperates with Bcl2 overexpression to promote lymphoma in mice.

scientific article

Data normalization considerations for digital tumor dissection.

scientific article

Detection and Surveillance of Bladder Cancer Using Urine Tumor DNA

scientific article published on 21 December 2018

Determining cell type abundance and expression from bulk tissues with digital cytometry

scientific article published on 06 May 2019

Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray

scientific article published on 9 May 2007

Discovery of distinctive gene expression profiles in human arthritides by cDNA micro-array analysis.

scientific article published on 4 February 2002

Distinct IL-4-induced gene expression, proliferation, and intracellular signaling in germinal center B-cell-like and activated B-cell-like diffuse large-cell lymphomas.

scientific article published on 9 December 2004

Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA.

scientific article

Distinct patterns of B-cell receptor signaling in non-Hodgkin lymphomas identified by single-cell profiling

scientific article

Dynamic Risk Profiling Using Serial Tumor Biomarkers for Personalized Outcome Prediction

scientific article published on 04 July 2019

Early Detection of Molecular Residual Disease in Localized Lung Cancer by Circulating Tumor DNA Profiling.

scientific article published on 12 September 2017

Enhanced detection of minimal residual disease by targeted sequencing of phased variants in circulating tumor DNA

scientific article published on 22 July 2021

Examining the living genome in health and disease with DNA microarrays

scientific article published on 01 May 2000

Expression profiles of adult T-cell leukemia-lymphoma and associations with clinical responses to zidovudine and interferon alpha

scientific article

FACTERA: a practical method for the discovery of genomic rearrangements at breakpoint resolution

scientific article

First Isolation of Cryptococcus uzbekistanensis from an Immunocompromised Patient with Lymphoma ⬇️

scientific article published on December 21, 2011

Functional significance of U2AF1 S34F mutations in lung adenocarcinomas

scientific article published on 13 December 2019

Genomic analysis of renal allograft dysfunction using cDNA microarrays.

scientific article published in February 2001

High PD-1 expression and suppressed cytokine signaling distinguish T cells infiltrating follicular lymphoma tumors from peripheral T cells.

scientific article published on 7 January 2013

High-throughput genomic profiling of tumor-infiltrating leukocytes.

scientific article

High-throughput sequencing for noninvasive disease detection in hematologic malignancies.

scientific article published on 09 June 2017

Hit-and-run lymphomagenesis by the Bcl6 oncogene

scientific article published on 27 May 2014

Identification of gene microarray expression profiles in patients with chronic graft-versus-host disease following allogeneic hematopoietic cell transplantation ⬇️

scientific article published on May 1, 2013

Impact of TET2 mutations on mRNA expression and clinical outcomes in MDS patients treated with DNA methyltransferase inhibitors

scientific article published on 27 October 2010

Integrated digital error suppression for improved detection of circulating tumor DNA

scientific article

Integrating Tumor and Stromal Gene Expression Signatures With Clinical Indices for Survival Stratification of Early-Stage Non-Small Cell Lung Cancer.

scientific article published on 18 August 2015

Integrating genomic features for non-invasive early lung cancer detection

scientific article published on 25 March 2020

KEAP1/NFE2L2 mutations predict lung cancer radiation resistance that can be targeted by glutaminase inhibition

scientific article published on 18 October 2020

KLHL6 Is Preferentially Expressed in Germinal Center-Derived B-Cell Lymphomas.

scientific article published on 11 November 2017

Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging

scientific article published on 21 July 2015

Mixed phenotype acute leukemia: A study of 61 cases using World Health Organization and European Group for the Immunological Classification of Leukaemias criteria

scientific article

Molecular and immunological signatures are related to clinical benefit from treatment with Vocimagene amiretrorepvec (Toca 511) and 5-fluorocytosine (Toca FC) in patients with glioma

scientific article published on 18 August 2020

Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation

scientific article

Noninvasive monitoring of diffuse large B-cell lymphoma by immunoglobulin high-throughput sequencing.

scientific article published on 17 April 2015

Organocatalytic removal of formaldehyde adducts from RNA and DNA bases

scientific article published on 3 August 2015

Potential clinical utility of ultrasensitive circulating tumor DNA detection with CAPP-Seq.

scientific article

Predicting HLA class II antigen presentation through integrated deep learning

scientific article published on 14 October 2019

Predicting Radiotherapy Responses and Treatment Outcomes Through Analysis of Circulating Tumor DNA.

scientific article

Probing lymphocyte biology by genomic-scale gene expression analysis.

scientific article

Profiling Tumor Infiltrating Immune Cells with CIBERSORT.

scientific article published in January 2018

Prospective separation of normal and leukemic stem cells based on differential expression of TIM3, a human acute myeloid leukemia stem cell marker ⬇️

scientific article published on March 7, 2011

Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia ⬇️

scientific article published on December 3, 2001

Reply to J. Wang et al

scientific article published on 12 February 2019

Rituximab use and survival after diffuse large B-cell or follicular lymphoma: a population-based study ⬇️

scientific article published on September 28, 2012

Robust enumeration of cell subsets from tissue expression profiles

scientific article published on 30 March 2015

Role of KEAP1/NRF2 and TP53 Mutations in Lung Squamous Cell Carcinoma Development and Radiation Resistance.

scientific article

Role of interleukin 6 in myocardial dysfunction of meningococcal septic shock.

scientific article published on January 2004

Second-line mitoxantrone, etoposide, and cytarabine for acute myeloid leukemia: a single-center experience.

scientific article

Self-antigen recognition by follicular lymphoma B-cell receptors ⬇️

scientific article published on September 28, 2012

Single cell analysis reveals distinct immune landscapes in transplant and primary sarcomas that determine response or resistance to immunotherapy

scientific article published on 17 December 2020

Specific post-translational histone modifications of neutrophil extracellular traps as immunogens and potential targets of lupus autoantibodies ⬇️

scientific article published on February 2, 2012

Surgical and molecular characterization of primary and metastatic disease in a neuroendocrine tumor arising in a tailgut cyst

scientific article published on 01 October 2018

Surprise! HSC are aberrant in chronic lymphocytic leukemia.

scientific article published in August 2011

Targetable genetic alterations of () drive immunoglobulin expression in diffuse large B cell lymphoma

scientific article published on 01 June 2019

The CD47-signal regulatory protein alpha (SIRPa) interaction is a therapeutic target for human solid tumors

scientific article

The chemoattractant chemerin suppresses melanoma by recruiting natural killer cell antitumor defenses.

scientific article

The lymphochip: a specialized cDNA microarray for the genomic-scale analysis of gene expression in normal and malignant lymphocytes.

scientific article

The prognostic landscape of genes and infiltrating immune cells across human cancers

scientific article published on 20 July 2015

The t(14;18) defines a unique subset of diffuse large B-cell lymphoma with a germinal center B-cell gene expression profile

scientific article published on 01 April 2002

Therapeutic Antibody Targeting of CD47 Eliminates Human Acute Lymphoblastic Leukemia ⬇️

scientific article published on December 21, 2010

Three differentiation states risk-stratify bladder cancer into distinct subtypes

scientific article published on 19 January 2012

Toward understanding and exploiting tumor heterogeneity

scientific article

Transformation of follicular lymphoma to diffuse large cell lymphoma is associated with a heterogeneous set of DNA copy number and gene expression alterations

scientific article published on 24 October 2002

Transient expression of Bcl6 is sufficient for oncogenic function and induction of mature B-cell lymphoma

scientific article

Treatment advances have not improved the early death rate in acute promyelocytic leukemia ⬇️

scientific article published on October 11, 2011

Tumor antigen discovery through translation of the cancer genome

scientific article published on May 2014

Utility in prognostic value added by molecular profiles for diffuse large B-cell lymphoma ⬇️

scientific article published on April 11, 2013

Utility of positron emission tomography scans in mantle cell lymphoma

scientific article published on 22 August 2011

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