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List of works by Akihiko Yamagishi

A detailed unfolding pathway of a (beta/alpha)8-barrel protein as studied by molecular dynamics simulations.

scientific article published in February 2005

A novel chiral thiol reagent for automated precolumn derivatization and high-performance liquid chromatographic enantioseparation of amino acids and its application to the aspartate racemase assay ⬇️

scientific article published on April 15, 2003

Adaptation of a hyperthermophilic group II chaperonin to relatively moderate temperatures.

scientific article published on 19 February 2010

Addition of negatively charged residues can reverse the decrease in the solubility of an acidic protein caused by an artificially introduced non-polar surface patch

scientific article published on 27 December 2013

An actin homolog of the archaeon Thermoplasma acidophilum that retains the ancient characteristics of eukaryotic actin

scientific article

Ancestral amino acid substitution improves the thermal stability of recombinant lignin-peroxidase from white-rot fungi, Phanerochaete chrysosporium strain UAMH 3641.

scientific article published on 8 April 2015

Birth of Archaeal Cells: Molecular Phylogenetic Analyses of G1P Dehydrogenase, G3P Dehydrogenases, and Glycerol Kinase Suggest Derived Features of Archaeal Membranes Having G1P Polar Lipids.

scientific article published on 28 September 2016

Calditerricola satsumensis gen. nov., sp. nov. and Calditerricola yamamurae sp. nov., extreme thermophiles isolated from a high-temperature compost.

scientific article published on 16 April 2010

Characteristics of microbial communities in crustal fluids in a deep-sea hydrothermal field of the suiyo seamount.

scientific article

Characterization of a thermostable mutant of Agaricus brasiliensis laccase created by phylogeny-based design.

scientific article published on 25 August 2017

Characterization of the DNA gyrase from the thermoacidophilic archaeon Thermoplasma acidophilum.

scientific article

Characterization of the low-temperature activity of Sulfolobus tokodaii glucose-1-dehydrogenase mutants

scientific article published on 16 April 2014

Characterization of the precursor of tetraether lipid biosynthesis in the thermoacidophilic archaeon Thermoplasma acidophilum.

scientific article

Cloning and characterization of laccase DNA from the Royal Sun medicinal mushroom, Agaricus brasiliensis (higher Basidiomycetes).

scientific article

Complete nucleotide sequences of mitochondrial genomes of two solitary entoprocts, Loxocorone allax and Loxosomella aloxiata: implications for lophotrochozoan phylogeny.

scientific article

Complete polar lipid composition of Thermoplasma acidophilum HO-62 determined by high-performance liquid chromatography with evaporative light-scattering detection.

scientific article published on January 2002

Comprehensive reduction of amino acid set in a protein suggests the importance of prebiotic amino acids for stable proteins

scientific article published on 19 January 2018

Continuous Cell-free Protein Synthesis Directed by Messenger DNA and Catalyzed by Extract ofThermus thermophilusHB27 ⬇️

scientific article published on March 1, 2003

Creation of artificial protein-protein interactions using α-helices as interfaces.

scientific article published on 6 December 2017

Deinococcus aerius sp. nov., isolated from the high atmosphere.

scientific article published on 30 June 2009

Deinococcus aetherius sp. nov., isolated from the stratosphere.

scientific article published on 5 August 2009

Designing thermostable proteins: ancestral mutants of 3-isopropylmalate dehydrogenase designed by using a phylogenetic tree.

scientific article published on 8 November 2005

Distinct tRNA modifications in the thermo-acidophilic archaeon, Thermoplasma acidophilum

scientific article

Distribution and phylogenetic diversity of cbbM genes encoding RubisCO form II in a deep-sea hydrothermal field revealed by newly designed PCR primers.

scientific article

Draft Genome Sequence of the Radioresistant Bacterium Deinococcus aerius TR0125, Isolated from the High Atmosphere above Japan.

scientific article

Effects of pH and temperature on the composition of polar lipids in Thermoplasma acidophilum HO-62.

scientific article published on 6 June 2008

Environmental Data and Survival Data of Deinococcus aetherius from the Exposure Facility of the Japan Experimental Module of the International Space Station Obtained by the Tanpopo Mission

article by Akihiko Yamagishi et al published November 2018 in Astrobiology

Epistasis effects of multiple ancestral-consensus amino acid substitutions on the thermal stability of glycerol kinase from Cellulomonas sp. NT3060.

scientific article published on 19 October 2015

Establishment of mesophilic-like catalytic properties in a thermophilic enzyme without affecting its thermal stability

scientific article published on 27 June 2019

Experimental evidence for the thermophilicity of ancestral life

scientific article

Fluorescence imaging of microbe-containing particles shot from a two-stage Light-gas gun into an aerogel.

scientific article

Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene.

scientific article

Hydroxylation of a conserved tRNA modification establishes non-universal genetic code in echinoderm mitochondria.

scientific article published on 7 August 2017

Identification and characterization of key substructures involved in the early folding events of a (beta/alpha)8-barrel protein as studied by experimental and computational methods.

scientific article

Improvement of Bacillus circulans beta-amylase activity attained using the ancestral mutation method.

scientific article published on 20 April 2010

Investigation of the Interplanetary Transfer of Microbes in the Tanpopo Mission at the Exposed Facility of the International Space Station

scientific article

Iron-Based Microbial Ecosystem on and Below the Seafloor: A Case Study of Hydrothermal Fields of the Southern Mariana Trough

scientific article (publication date: 2012)

Labeling quinone-binding sites in photosynthetic reaction centers: A 38-kilodalton protein associated with the acceptor side of photosystem II.

scientific article

Mapping of unit boundaries of a protein: exhaustive search for permissive sites for duplication by complementation analysis of random fragment libraries of tryptophan synthase alpha subunit.

scientific article published in January 2004

Metabolic characteristics of an isocitrate dehydrogenase defective derivative of escherichia coli BL21(DE3) ⬇️

scientific article published on December 20, 2003

Mimicking the evolution of a thermally stable monomeric four-helix bundle by fusion of four identical single-helix peptides.

scientific article

Mitochondrial genome structure and evolution in the living fossil vampire squid, Vampyroteuthis infernalis, and extant cephalopods.

scientific article

Partial purification and characterization of polyphenoloxidase from culinary-medicinal Royal Sun mushroom (the Himematsutake), Agaricus brasiliensis S. Wasser et al. (Agaricomycetideae)

scientific article published on 01 January 2011

Phylogeny-based design of a B-subunit of DNA gyrase and its ATPase domain using a small set of homologous amino acid sequences.

scientific article published on 27 July 2011

Proteometabolomic response of Deinococcus radiodurans exposed to UVC and vacuum conditions: Initial studies prior to the Tanpopo space mission.

scientific article published on 15 December 2017

Proteomic and Metabolomic Profiling of Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions

scientific article published on 29 April 2019

Quest for Ancestors of Eukaryal Cells Based on Phylogenetic Analyses of Aminoacyl-tRNA Synthetases.

scientific article published on 26 November 2016

Random mutagenesis improves the low-temperature activity of the tetrameric 3-isopropylmalate dehydrogenase from the hyperthermophile Sulfolobus tokodaii.

scientific article

Reconstructed ancestral enzymes suggest long-term cooling of Earth's photic zone since the Archean

scientific article published on 17 April 2017

Robustness of predictions of extremely thermally stable proteins in ancient organisms

scientific article published on 25 September 2015

Roles for the two N‐terminal (β/α) modules in the folding of a (β/α)8‐barrel protein as studied by fragmentation analysis ⬇️

scientific article published on January 1, 2011

Selection of a platinum-binding sequence in a loop of a four-helix bundle protein.

scientific article

Silica aerogel for capturing intact interplanetary dust particles for the Tanpopo experiment ⬇️

scientific article published on 21 March 2015

Structural analysis of the plasmid pTA1 isolated from the thermoacidophilic archaeon Thermoplasma acidophilum.

scientific article published on 22 February 2006

Substitutions of coenzyme-binding, nonpolar residues improve the low-temperature activity of thermophilic dehydrogenases.

scientific article published on 19 September 2011

Taurine-containing uridine modifications in tRNA anticodons are required to decipher non-universal genetic codes in ascidian mitochondria.

scientific article

The effects of multiple ancestral residues on the Thermus thermophilus 3-isopropylmalate dehydrogenase

scientific article published on 16 June 2006

The effects of mutations at position 253 on the thermostability of the Bacillus subtilis 3-isopropylmalate dehydrogenase subunit interface

scientific article published on 27 March 2007

The possible interplanetary transfer of microbes: assessing the viability of Deinococcus spp. under the ISS Environmental conditions for performing exposure experiments of microbes in the Tanpopo mission.

scientific article

Thermal unfolding of ribonuclease T1 studied by multi-dimensional NMR spectroscopy.

scientific article published in December 2004

[Domain Archaea and evolution of life]

scientific article published on 01 February 2009

[Evolution of prokaryotic cytoskeleton]

scientific article published on 01 October 2008

[Why are thermophilic proteins thermally stable?]

scientific article published on 01 December 2009

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