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List of works by Robert David Stevens

A Case Study on Sepsis Using PubMed and Deep Learning for Ontology Learning

scientific article published on January 2017

A Flexible API and Editor for SKOS

scientific article published in iswc2008 posters and demonstrations

A Little Semantic Web Goes a Long Way in Biology

article by K. Wolstencroft et al published 2005 in Lecture Notes in Computer Science

A Survey of Bioinformatics Database and Software Usage through Mining the Literature

scientific article

A foundation for tool based mobility support for visually impaired web users

article

A short study on the success of the Gene Ontology

2004 article

A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis

scientific article (publication date: 2007)

A systematic strategy for the discovery of candidate genes responsible for phenotypic variation

scientific article

A systematic strategy for the discovery of candidate genes responsible for phenotypic variation.

scientific article published on 20 November 2007

A user-centred evaluation framework for the Sealife semantic web browsers

scientific article published in October 2009

Adding a little reality to building ontologies for biology

scientific article

Ambiguity and variability of database and software names in bioinformatics

scientific article

Analysing Syntactic Regularities and Irregularities in SNOMED-CT ⬇️

scientific article published on December 17, 2012

Annotation of environmental OMICS data: application to the transcriptomics domain

scientific article

Applying OWL Reasoning to Genomic Data

article

Augmenting the mobility of profoundly blind Web travellers

article

Automatic annotation of Web services based on workflow definitions

scientific article (publication date: April 2008)

Automating generation of textual class definitions from OWL to English. ⬇️

scientific article

Bias in the reporting of sex and age in biomedical research on mouse models

scientific article published on 4 March 2016

BioCatalogue: A Curated Web Service Registry For The Life Science Community

BioCatalogue: a universal catalogue of web services for the life sciences

scientific article (publication date: July 2010)

Building Workflows that Traverse the Bioinformatics Data Landscape

Building a bioinformatics ontology using OIL.

scientific article published on June 2002

Building ontologies in DAML + OIL

scientific article published on January 2003

Comparing ontology authoring workflows with Protégé: In the laboratory, in the tutorial and in the ‘wild’

Complex Query Formulation Over Diverse Information Sources in TAMBIS

article

Computing Identity Co-Reference Across Drug Discovery Datasets ⬇️

article

DANTE

article

Data curation + process curation=data integration + science

scientific article

Data integration in eHealth: a domain/disease specific roadmap.

scientific article

Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature.

scientific article

Designing the myExperiment Virtual Research Environment for the Social Sharing of Workflows

article

Developing Ontologies within Decentralised Settings

scholarly article published 2010

Developing a kidney and urinary pathway knowledge base ⬇️

scientific article

Development of FuGO: an ontology for functional genomics investigations

scientific article published on January 2006

Evaluating DANTE

article

Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference

scientific article published on 03 September 2014

Evaluation of a non-visual molecule browser

Evaluation of a non-visual molecule browser

Evaluation of the Zucker diabetic fatty (ZDF) rat as a model for human disease based on urinary peptidomic profiles

scientific article

Experiments to Create Ontology-based Disease Models for Diabetic Retinopathy from Different Biomedical Resources ⬇️

Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes

scientific article published on 12 November 2019

Extracting patterns of database and software usage from the bioinformatics literature

scientific article published on September 2014

How people use presentation to search for a link: expanding the understanding of accessibility on the Web

article

ISMB 2003 Bio-ontologies SIG and Sixth Annual Bio-ontologies Meeting Report

scientific article published on January 2003

ISPIDER Central: an integrated database web-server for proteomics

scientific article published on 25 April 2008

Identifying the challenges of code/theory translation: report from the Code/Theory 2017 workshop

article

In situ migration of handcrafted ontologies to reason-able forms

article

Inference Inspector: Improving the verification of ontology authoring actions

Inspecting Regularities in Ontology Design Using Clustering

scientific article published in ISWC 2011

Knowledge Discovery for Biology with Taverna

article

Knowledge Integration

article

Knowledge Representation for Web Navigation ⬇️

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL

scientific article

MIRO: guidelines for minimum information for the reporting of an ontology

scientific article published on 18 January 2018

Making Graph-Based Diagrams Work in Sound: The Role of Annotation

Measuring the level of activity in community built bio-ontologies

scientific article published on 25 April 2012

Mining Semantic Descriptions of Bioinformatics Web Resources from the Literature

Mining Semantic Networks of Bioinformatics e-Resources from the Literature ⬇️

Mining Taverna's semantic web of provenance

article

Mining semantic networks of bioinformatics e-resources from the literature ⬇️

scientific article published on March 7, 2011

OILing the way to machine understandable bioinformatics resources

scientific article published on June 2002

OilEd: A Reason-able Ontology Editor for the Semantic Web

scientific article (publication date: 2001)

Omics databases on kidney disease: where they can be found and how to benefit from them

scientific article

Ontology Learning with Deep Learning: a Case Study on Patient Safety Using PubMed ⬇️

scholarly article by Mercedes Arguello Casteleiro et al published 19 February 2017 in Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences

Ontology for genome comparison and genomic rearrangements

scientific article published on January 2004

Overcoming the pitfalls of ontology authoring: Strategies and implications for tool design

Perspectives on automated composition of workflows in the life sciences

scientific article

Populous: A Tool for Populating Templates for OWL Ontologies ⬇️

Populous: a tool for building OWL ontologies from templates

scientific article

Prediction of Proteases Involved in Peptide Generation

scientific article published in January 2017

Principles for the design of auditory interfaces to present complex information to blind people

doctoral thesis

Proteasix: a tool for automated and large-scale prediction of proteases involved in naturally occurring peptide generation

scientific article

Prototype mobility tools for visually impaired surfers

article

Quality of methods reporting in animal models of colitis

scientific article published on June 2015

SKOS with OWL: Don’t be Full-ish! ⬇️

scientific article

Scientific Lenses to Support Multiple Views over Linked Chemistry Data ⬇️

scientific article

Sealife: a semantic grid browser for the life sciences applied to the study of infectious diseases.

scientific article

Semantic Deep Learning: Prior Knowledge and a Type of Four-Term Embedding Analogy to Acquire Treatments for Well-Known Diseases

scientific article published on 06 August 2020

Special Issue: The First Provenance Challenge

article

State of the nation in data integration for bioinformatics

scientific article

Stealthy annotation of experimental biology by spreadsheets

Structure-based classification and ontology in chemistry

scientific article (publication date: 5 April 2012)

Taverna/myGrid: Aligning a Workflow System with the Life Sciences Community

article

Taverna: a tool for building and running workflows of services

scientific article

Taverna: lessons in creating a workflow environment for the life sciences

article

Ten Simple Rules for Selecting a Bio-ontology

scientific article

The 8 annual bio-ontologies meeting

scientific article published on January 2005

The BioHub Knowledge Base: Ontology and Repository for Sustainable Biosourcing

scientific article

The Current State of SKOS Vocabularies on the Web

article

The KUPKB: a novel Web application to access multiomics data on kidney disease

scientific article

The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases

scientific article

The Proteasix Ontology

scientific article

The Seventh Annual Bio-Ontologies Meeting Moat House Hotel, Glasgow, 30 July 2004.

scientific article published on January 2004

The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation

scientific article

The design and realisation of the Virtual Research Environment for social sharing of workflows

article

The eighth annual bio-ontologies meeting

scientific article

The language of gene ontology: a Zipf’s law analysis ⬇️

scientific article published on June 7, 2012

The minimum information about a genome sequence (MIGS) specification

scientific article

The quality of methods reporting in parasitology experiments

scientific article

The semantic web and knowledge grids

scientific article (publication date: 2005)

The travails of visually impaired web travellers

article

The use of concept maps during knowledge elicitation in ontology development processes--the nutrigenomics use case

scientific article (publication date: 25 May 2006)

Thematic series on biomedical ontologies in JBMS: challenges and new directions

scientific article

Three Steps to Heaven: Semantic Publishing in a Real World Workflow

article by Phillip Lord et al published 8 November 2012 in Future Internet

Toward a definition of visual complexity as an implicit measure of cognitive load

article

Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL

scientific article

Unveiling antimicrobial peptide-generating human proteases using PROTEASIX.

scientific article

Using Distributed Data and Tools in Bioinformatics Applications

scholarly article

Using Ontologies and Vocabularies for Dynamic Linking

article

Using Semantic Web Technologies for Representing E-science Provenance

scientific article published in ISWC 2004

Using haptic cues to aid nonvisual structure recognition

Using provenance to manage knowledge of in silico experiments

scientific article published in May 2007

Using semantic web technologies to manage complexity and change in biomedical data

scientific article

Validating the use and role of visual elements of web pages in navigation with an eye-tracking study

article

Wrestling with SUMO and bio-ontologies

scientific article

bioNerDS: exploring bioinformatics' database and software use through literature mining

scientific article

myGrid and the drug discovery process

article

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