List of works by Carolyn J Mattingly

2,3,7,8-Tetrachlorodibenzo-p-dioxin upregulates FoxQ1b in zebrafish jaw primordium.

scientific article

A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions.

scientific article published on 28 November 2013

Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database

scientific article published on 18 January 2018

Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database

scientific article (publication date: October 2016)

Advancing toxicology research using in vivo high throughput toxicology with small fish models

scientific article published on 21 June 2016

An evaluation of information content as a metric for the inference of putative conserved noncoding regions in DNA sequences using a genetic algorithms approach.

scientific article

Applying evolutionary genetics to developmental toxicology and risk assessment.

scientific article

Aquatic models, genomics and chemical risk management

scientific article

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

scientific article

Beyond the looking glass: recent advances in understanding the impact of environmental exposures on neuropsychiatric disease

scientific article published on 28 February 2020

BioC interoperability track overview

scientific article

BioCreative V CDR task corpus: a resource for chemical disease relation extraction

scientific article

BioCreative-2012 virtual issue

scientific article published on 5 December 2012

Cadmium exposure and MEG3 methylation differences between Whites and African Americans in the NEST Cohort

scientific article published on 01 July 2019

Cadmium exposure increases the risk of juvenile obesity: a human and zebrafish comparative study.

scientific article published on 20 February 2018

Cell and molecular biology of marine elasmobranchs: Squalus acanthias and Raja erinacea

scientific article

Chemical databases for environmental health and clinical research.

scientific article published on 18 October 2008

Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways

scientific article published on 01 September 2018

Collaborative biocuration--text-mining development task for document prioritization for curation

scientific article

Comparative Toxicogenomics Database (CTD): update 2021

scientific article published on 17 October 2020

Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks

scientific article published on 09 September 2008

Disease model curation improvements at Mouse Genome Informatics

scientific article published on 20 March 2012

DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD.

scientific article published on 14 October 2011

Estrogen receptor reduces CYP1A1 induction in cultured human endometrial cells.

scientific article

From the Cover: Embryonic Exposure to TCDD Impacts Osteogenesis of the Axial Skeleton in Japanese medaka, Oryzias latipes.

scientific article published on 15 November 2016

GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic profiles.

scientific article

Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database

scientific article

Genetic and environmental pathways to complex diseases

scientific article

Green fluorescent protein (GFP) as a marker of aryl hydrocarbon receptor (AhR) function in developing zebrafish (Danio rerio).

scientific article

Heavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies

scientific article published on 19 February 2018

Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health

scientific article (publication date: 20 March 2017)

Integration of curated and high-throughput screening data to elucidate environmental influences on disease pathways

scientific article published on 27 June 2019

Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences

scientific article

Leveraging the Comparative Toxicogenomics Database to fill in knowledge gaps for environmental health: a test case for air pollution-induced cardiovascular disease

scientific article published on 14 July 2020

MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.

scientific article

Marine organism cell biology and regulatory sequence discoveryin comparative functional genomics.

scientific article

Perturbation of defense pathways by low-dose arsenic exposure in zebrafish embryos

scientific article

Posttranscriptional silencing of cytochrome P4501A1 (CYP1A1) during zebrafish (Danio rerio) development.

scientific article published on December 2001

Providing the missing link: the exposure science ontology ExO

scientific article published on 12 March 2012

Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database

scientific article

Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database

scientific article

Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)

scientific article (publication date: 8 October 2009)

Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the comparative toxicogenomics database

scientific article

The Comparative Toxicogenomics Database (CTD).

scientific article

The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies

scientific article

The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study.

scientific article

The Comparative Toxicogenomics Database's 10th year anniversary: update 2015.

scientific article

The Comparative Toxicogenomics Database: update 2011.

scientific article

The Comparative Toxicogenomics Database: update 2013.

scientific article

The Comparative Toxicogenomics Database: update 2017

scientific article (publication date: 4 January 2017)

The Comparative Toxicogenomics Database: update 2019

scientific article published on 01 January 2019

The comparative toxicogenomics database: a cross-species resource for building chemical-gene interaction networks

scientific article

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database

scientific article

ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings

scientific article (publication date: 2016)

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.

scientific article

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