List of works - Rafal Slusarz

A hypothesis for GPCR activation

scientific article published on 12 May 2005

A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions

scientific article

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.

scientific article

Analysis of interactions responsible for vasopressin binding to human neurohypophyseal hormone receptors-molecular dynamics study of the activated receptor-vasopressin-G(alpha) systems

scientific article published on 01 March 2006

Conformational stability of the full-atom hexameric model of the ClpB chaperone from Escherichia coli.

scientific article

Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment

scientific article published on 26 July 2019

Extension of the UNRES Coarse-Grained Force Field to Membrane Proteins in the Lipid Bilayer

scientific article published on 10 September 2019

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13

scientific article published on 11 February 2020

Influence of bulky 3,3'-diphenylalanine enantiomers replacing position 2 of AVP analogues on their conformations: NMR and molecular modeling studies.

scientific article published on 8 June 2010

Interactions of vasopressin and oxytocin receptors with vasopressin analogues substituted in position 2 with 3,3'-diphenylalanine--a molecular docking study.

scientific article

Investigation of cis/trans ratios of peptide bonds in AVP analogues containing N-methylphenylalanine enantiomers.

scientific article

Investigation of mechanism of desmopressin binding in vasopressin V2 receptor versus vasopressin V1a and oxytocin receptors: molecular dynamics simulation of the agonist-bound state in the membrane-aqueous system

scientific article

Lessons from application of the UNRES force field to predictions of structures of CASP10 targets

scientific article

Molecular docking-based study of vasopressin analogues modified at positions 2 and 3 with N-methylphenylalanine: influence on receptor-bound conformations and interactions with vasopressin and oxytocin receptors

scientific article published on 01 April 2006

Molecular dynamics simulation of human neurohypophyseal hormone receptors complexed with oxytocin-modeling of an activated state

scientific article published on 01 March 2006

Molecular dynamics study of 4-OH-phenylacetyl- D -Y(Me)FQNRPR-NH 2 selectivity to V1a receptor

scientific article published on 07 October 2003

Molecular dynamics study of the internal water molecules in vasopressin and oxytocin receptors

scientific article published in January 2009

Molecular modeling of Gram-positive bacteria peptidoglycan layer, selected glycopeptide antibiotics and vancomycin derivatives modified with sugar moieties

scientific article published on 12 February 2014

Molecular modeling of interactions of the non-peptide antagonist YM087 with the human vasopressin V1a, V2 receptors and with oxytocin receptors.

scientific article published in December 2001

Molecular modeling of the neurohypophyseal receptor/atosiban complexes

scientific article published in June 2003

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.

scientific article

Theoretical conformational analysis of six arginine vasopressin analogs with the L-naphthylalanine in position 3

scientific article published on 01 December 2000

Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets

scientific article published on 24 May 2018

List of works by Rafal Slusarz

A hypothesis for GPCR activation

A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.

Analysis of interactions responsible for vasopressin binding to human neurohypophyseal hormone receptors-molecular dynamics study of the activated receptor-vasopressin-G(alpha) systems

Conformational stability of the full-atom hexameric model of the ClpB chaperone from Escherichia coli.

Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment

Extension of the UNRES Coarse-Grained Force Field to Membrane Proteins in the Lipid Bilayer

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13

Influence of bulky 3,3'-diphenylalanine enantiomers replacing position 2 of AVP analogues on their conformations: NMR and molecular modeling studies.

Interactions of vasopressin and oxytocin receptors with vasopressin analogues substituted in position 2 with 3,3'-diphenylalanine--a molecular docking study.

Investigation of cis/trans ratios of peptide bonds in AVP analogues containing N-methylphenylalanine enantiomers.

Investigation of mechanism of desmopressin binding in vasopressin V2 receptor versus vasopressin V1a and oxytocin receptors: molecular dynamics simulation of the agonist-bound state in the membrane-aqueous system

Lessons from application of the UNRES force field to predictions of structures of CASP10 targets

Molecular docking-based study of vasopressin analogues modified at positions 2 and 3 with N-methylphenylalanine: influence on receptor-bound conformations and interactions with vasopressin and oxytocin receptors

Molecular dynamics simulation of human neurohypophyseal hormone receptors complexed with oxytocin-modeling of an activated state

Molecular dynamics study of 4-OH-phenylacetyl- D -Y(Me)FQNRPR-NH 2 selectivity to V1a receptor

Molecular dynamics study of the internal water molecules in vasopressin and oxytocin receptors

Molecular modeling of Gram-positive bacteria peptidoglycan layer, selected glycopeptide antibiotics and vancomycin derivatives modified with sugar moieties

Molecular modeling of interactions of the non-peptide antagonist YM087 with the human vasopressin V1a, V2 receptors and with oxytocin receptors.

Molecular modeling of the neurohypophyseal receptor/atosiban complexes

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.

Theoretical conformational analysis of six arginine vasopressin analogs with the L-naphthylalanine in position 3

Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets