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List of works by Jacques Rougemont

A gene-rich, transcriptionally active environment and the pre-deposition of repressive marks are predictive of susceptibility to KRAB/KAP1-mediated silencing.

scientific article

A single epidermal stem cell strategy for safe ex vivo gene therapy.

scientific article

Analysis of S. pombe SIN protein association to the SPB reveals two genetically separable states of the SIN.

scientific article published on 12 December 2014

Bicaudal C1 promotes pancreatic NEUROG3+ endocrine progenitor differentiation and ductal morphogenesis

scientific article published on 01 March 2015

Bicaudal C1 promotes pancreatic NEUROG3+ endocrine progenitor differentiation and ductal morphogenesis

scientific article published on 01 January 2016

Collective synchronization in populations of globally coupled phase oscillators with drifting frequencies.

scientific article published on 18 January 2006

Comparative Genomics ofesxGenes from Clinical Isolates of Mycobacterium tuberculosis Provides Evidence for Gene Conversion and Epitope Variation ⬇️

scientific article published on August 1, 2011

Computational Analysis of Protein–DNA Interactions from ChIP-seq Data ⬇️

scientific article published on January 1, 2012

DNA microarray data and contextual analysis of correlation graphs

scientific article

Exploring Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci.

scientific article published on 7 September 2016

Feature extraction and signal processing for nylon DNA microarrays

scientific article

Few crucial links assure checkpoint efficiency in the yeast cell-cycle network.

scientific article published on 7 August 2006

Functional characterization of the TERRA transcriptome at damaged telomeres.

scientific article

GETPrime 2.0: gene- and transcript-specific qPCR primers for 13 species including polymorphisms

scientific article (publication date: 4 January 2017)

Gene Expression Profiling for Molecular Characterization of Inflammatory Breast Cancer and Prediction of Response to Chemotherapy

scientific article published in December 2004

Gene expression variation and expression quantitative trait mapping of human chromosome 21 genes

article

Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver

scientific article

Genome-wide re-sequencing of multidrug-resistant Mycobacterium leprae Airaku-3.

scientific article published on 29 March 2014

HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis

scientific article (publication date: 2014)

Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics.

scientific article

MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies.

scientific article

Nemo: an evolutionary and population genetics programming framework.

scientific article published on 31 July 2006

Nucleosome Stability Distinguishes Two Different Promoter Types at All Protein-Coding Genes in Yeast.

scientific article

Perinatal exposure to bisphenol a increases adult mammary gland progesterone response and cell number.

scientific article

Primer-initiated sequence synthesis to detect and assemble structural variants.

scientific article published on 13 June 2010

Processing and analyzing ChIP-seq data: from short reads to regulatory interactions ⬇️

scientific article published on September 22, 2010

Progesterone and Wnt4 control mammary stem cells via myoepithelial crosstalk

scientific article

Protein expression profiling identifies subclasses of breast cancer and predicts prognosis.

scientific article published in February 2005

Representing perturbed dynamics in biological network models

scientific article published on 25 July 2007

Stabilizing patterning in the Drosophila segment polarity network by selecting models in silico.

scientific article published on 22 July 2010

TFAP2 transcription factors are regulators of lipid droplet biogenesis

scientific article published on 26 September 2018

The Intestinal Microbiota Contributes to the Ability of Helminths to Modulate Allergic Inflammation.

scientific article published on 27 October 2015

The PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in Mycobacterium tuberculosis.

scientific article

The SAGA complex, together with transcription factors and the endocytic protein Rvs167p, coordinates the reprofiling of gene expression in response to changes in sterol composition in Saccharomyces cerevisiae.

scientific article published on 2 August 2017

The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae.

scientific article

Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription

scientific article

Virulence regulator EspR of Mycobacterium tuberculosis is a nucleoid-associated protein.

scientific article

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