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List of works by Richard D. Smith

"Zero-length" cross-linking in solid state as an approach for analysis of protein-protein interactions

scientific article

18O-Labeled Proteome Reference as Global Internal Standards for Targeted Quantification by Selected Reaction Monitoring-Mass Spectrometry ⬇️

scientific article published on October 11, 2011

A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements

scientific article published on 21 November 2017

A Dual-Trap Design and Its Applications in Electrospray Ionization FTICR Mass Spectrometry

scientific article published on 01 April 1997

A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection

scientific article

A New High‐performance Interface for Capillary Electrophoresis/Electrospray Ionization Mass Spectrometry

scholarly article by Joanne C. Severs et al published 31 July 1996 in Rapid Communications in Mass Spectrometry

A Targeted Mass Spectrometric Assay for Reliable Sensitive Hepcidin Quantification

scientific article published on 13 May 2019

A common open representation of mass spectrometry data and its application to proteomics research

scientific article

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

scientific article

A compendium of multi-omics data illuminating host responses to lethal human virus infections

scientific article published in 2024

A comprehensive collection of systems biology data characterizing the host response to viral infection.

scientific article

A computational strategy to analyze label-free temporal bottom-up proteomics data

scientific article

A conceptual approach for FT-ICR cell harmonization utilizing external shim electrodes

A data-mining scheme for identifying peptide structural motifs responsible for different MS/MS fragmentation intensity patterns

scientific article

A direct mass spectrometric study of the mechanism of toluene pyrolysis at high temperatures

A dynamic ion cooling technique for FTICR mass spectrometry

scientific article published in November 2001

A genome-scale map of expression for a mouse brain section obtained using voxelation

scientific article published on 15 May 2007

A high performance low magnetic field internal electrospray ionization-fourier transform ion cyclotron resonance mass spectrometer

scientific article published on 01 September 1996

A highly sensitive targeted mass spectrometric assay for quantification of AGR2 protein in human urine and serum

scientific article

A hybrid approach to protein differential expression in mass spectrometry-based proteomics

scientific article

A low energy ICR study of the symmetric charge transfer reaction 3He+ + 4He → 4He+ + 3He

A mass spectrometric study of the thermal pyrolysis of S4N4

A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis

scientific article published on March 2009

A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples

scientific article

A microfabricated dialysis device for sample cleanup in electrospray ionization mass spectrometry.

scientific article

A multi-omic systems approach to elucidating Yersinia virulence mechanisms.

scientific article

A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins

scientific article published on 29 September 2010

A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses

scientific article

A new technique for unbiased external ion accumulation in a quadrupole two-dimensional ion trap for electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.

scientific article published in January 2001

A novel high‐performance Fourier transform ion cyclotron resonance cell for improved biopolymer characterization

A perspective on the Maillard reaction and the analysis of protein glycation by mass spectrometry: probing the pathogenesis of chronic disease

scientific article published on February 2009

A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy

scientific article

A proteomic view ofDesulfovibrio vulgaris metabolism as determined by liquid chromatography coupled with tandem mass spectrometry

scholarly article by Weiwen Zhang published in August 2006

A reversed-phase capillary ultra-performance liquid chromatography-mass spectrometry (UPLC-MS) method for comprehensive top-down/bottom-up lipid profiling

scientific article

A simple nanoelectrospray arrangement with controllable flowrate for mass analysis of submicroliter protein samples

scientific article published in January 2000

A simple procedure for effective quenching of trypsin activity and prevention of 18O-labeling back-exchange

scientific article published on May 2009

A small angle x-ray scattering study of the effect of pressure on the aggregation of asphaltene fractions in petroleum fluids under near-critical solvent conditions

A small-angle neutron scattering study of intermicellar interactions in microemulsions of AOT, water, and near-critical propane

article

A statistical framework for protein quantitation in bottom-up MS-based proteomics.

scientific article published on 17 June 2009

A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics

scientific article published on 15 July 2011

A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry.

scientific article published on 28 September 2017

A study of the mechanism of (2P) carbon ion reactions with benzene at 1.0 to 12 eV

article published in 1976

A study of the thermal denaturation of ribonuclease S by electrospray ionization mass spectrometry

scientific article published in July 1994

A systematic analysis of a deep mouse epididymal sperm proteome

scientific article published on June 2012

A tandem-ICR study of internal energy effects in the D3+ + Ar and ArD+ + H2(D2) reactions

article published in 1976

A top-down LC-FTICR MS-based strategy for characterizing oxidized calmodulin in activated macrophages

scientific article published on 22 March 2010

A uniquely modified RNA: Introduction of a single RNA cleavage agent into the M1 ribozyme

scientific article published in 1994

Aberrant mobility phenomena of the DNA repair protein XPA

scientific article

Accelerated high-resolution differential ion mobility separations using hydrogen

scientific article published on 10 November 2011

Accounting for population variation in targeted proteomics

scientific article published on 16 December 2013

Accurate mass measurements in proteomics.

scientific article published on 25 July 2007

Accurate mass multiplexed tandem mass spectrometry for high-throughput polypeptide identification from mixtures.

scientific article

Achieving 50% ionization efficiency in subambient pressure ionization with nanoelectrospray

scientific article

Activated ClpP kills persisters and eradicates a chronic biofilm infection

scientific article

Activation energies for gas-phase dissociations of multiply charged ions from electrospray ionization mass spectrometry

article published in 1992

Activity-based protein profiling of secreted cellulolytic enzyme activity dynamics in Trichoderma reesei QM6a, NG14, and RUT-C30.

scientific article

Activity-based protein profiling reveals mitochondrial oxidative enzyme impairment and restoration in diet-induced obese mice

scientific article

Advanced mass spectrometric methods for the rapid and quantitative characterization of proteomes

scientific article published on January 2002

Advanced nanoscale separations and mass spectrometry for sensitive high-throughput proteomics

scientific article

Advanced proteomic liquid chromatography

scientific article

Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications

scientific article published on 3 August 2006

Advances in proteomics data analysis and display using an accurate mass and time tag approach.

scientific article

Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics

scientific article

Affinity labeling of highly hydrophobic integral membrane proteins for proteome-wide analysis

scientific article published in March 2003

Aggregation of polyethylene glycol dodecyl ethers in supercritical carbon dioxide and ethane

article published in 1992

Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies.

scientific article published on 16 August 2013

Ammonia and methane chemical ionization mass spectra of acid and carbamate pesticides using direct supercritical fluid injection

scholarly article by Henry T. Kalinoski et al published January 1986 in Journal of Mass Spectrometry

An IMS-IMS analogue of MS-MS.

scientific article published on June 2006

An Interlaboratory Evaluation of Drift Tube Ion Mobility - Mass Spectrometry Collision Cross Section Measurements.

scientific article

An Ion Funnel Interface for Improved Ion Focusing and Sensitivity Using Electrospray Ionization Mass Spectrometry

scientific article published on 01 October 1998

An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies.

scientific article

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

scientific article published on 01 May 2002

An automated high performance capillary liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometer for high-throughput proteomics

scientific article

An efficient data format for mass spectrometry-based proteomics

scientific article

An electrodynamic ion funnel interface for greater sensitivity and higher throughput with linear ion trap mass spectrometers

An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells

scientific article

An improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) strategy for precise quantitative single-cell proteomics

scientific article published on 03 March 2020

An integrated top-down and bottom-up strategy for broadly characterizing protein isoforms and modifications

scientific article published on March 2009

Analysis of Single Cells with Capillary Electrophoresis Electrospray Ionization Fourier Transform Ion Cycloton Resonance Mass Spectrometry

scholarly article by Steven A. Hofstadler et al published 10 June 1996 in Rapid Communications in Mass Spectrometry

Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles

scientific article

Analysis of double-stranded polymerase chain reaction products from the Bacillus cereus group by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

scientific article published on 01 January 1996

Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry

scientific article published on October 2008

Analysis of serum total and free PSA using immunoaffinity depletion coupled to SRM: correlation with clinical immunoassay tests

scientific article

Analysis of single cells with capillary electrophoresis electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

scientific article published on 01 January 1996

Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions

scientific article published on 8 May 2006

Analytical applications of capillary supercritical fluid chromatography—mass spectrometry

Analytical characterization of the electrospray ion source in the nanoflow regime

scientific article published on 29 July 2008

Analytical supercritical fluid extraction of adsorbent materials

article published in 1987

Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry

scientific article published on August 2010

Angular averaged profiling of the radial electric field in compensated FTICR Cells

scientific article

Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum

scientific article

Application of Peptide LC Retention Time Information in a Discriminant Function for Peptide Identification by Tandem Mass Spectrometry

scientific article published on 01 July 2004

Application of Sequential Paired Covariance to Capillary Electrophoresis Electrospray Ionization Time-of-Flight Mass Spectrometry: Unraveling the Signal from the Noise in the Electropherogram

scientific article published in 1995

Application of X-ray Photoelectron Spectroscopy to the Study of Fly Ash

article by James A. Campbell et al published May 1978 in Applied Spectroscopy

Application of capillary supercritical fluid chromatography to the analysis of a middle distillate fuel

article published in 1984

Application of electron transfer dissociation mass spectrometry in analyses of non-enzymatically glycated peptides

scientific article

Application of pressurized solvents for ultrafast trypsin hydrolysis in proteomics: proteomics on the fly.

scientific article published on 08 July 2008

Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset.

scientific article published on 20 December 2007

Application of sequential paired covariance to liquid chromatography-mass spectrometry data enhancements in both the signal-to-noise ratio and the resolution of analyte peaks in the chromatogram

Application of the accurate mass and time tag approach in studies of the human blood lipidome.

scientific article published on 07 May 2008

Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures

scientific article published on August 2006

Applications of Supercritical Fluid Chromatography-Mass Spectrometry in the Analysis of Fossil Fuels

Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition

scientific article published on 12 October 2007

Approach to cerebrospinal fluid (CSF) biomarker discovery and evaluation in HIV infection

scientific article published on 13 August 2013

Array of chemically etched fused-silica emitters for improving the sensitivity and quantitation of electrospray ionization mass spectrometry

scientific article published on 2 May 2007

Assessing Collision Cross Section Calibration Strategies for Traveling Wave-Based Ion Mobility Separations in Structures for Lossless Ion Manipulations

scientific article published on 02 November 2020

Assigning quantitative function to post-translational modifications reveals multiple sites of phosphorylation that tune yeast pheromone signaling output

scientific article

Attomole level capillary electrophoresis-mass spectrometric protein analysis using 5 .mu.m i.d. capillaries

article

Author Correction: Informed-Proteomics: open-source software package for top-down proteomics

scientific article published on 01 July 2018

Author's reply

Automated 20 kpsi RPLC-MS and MS/MS with Chromatographic Peak Capacities of 1000−1500 and Capabilities in Proteomics and Metabolomics

scientific article published in 2005

Automated data extraction from in situ protein-stable isotope probing studies

scientific article

Automated gain control and internal calibration with external ion accumulation capillary liquid chromatography-electrospray ionization Fourier transform ion cyclotron resonance

scientific article published in August 2003

Automated gain control ion funnel trap for orthogonal time-of-flight mass spectrometry

scientific article published on 31 May 2008

Automated metal-free multiple-column nanoLC for improved phosphopeptide analysis sensitivity and throughput

scientific article published on 06 January 2009

Automatic gain control in mass spectrometry using a jet disrupter electrode in an electrodynamic ion funnel

scientific article

Basicity of the amino groups of the aminoglycoside amikacin using capillary electrophoresis and coupled CE-MS-MS techniques

scientific article

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

scientific article

Benzene pyrolysis and soot formation at high temperatures

Biases in ion transmission through an electrospray ionization-mass spectrometry capillary inlet

scientific article

Binding specificity of post-activated neocarzinostatin chromophore drug-bulged DNA complex studied using electrospray ionization mass spectrometry

scientific article published on 01 January 1996

Binding specificity of post‐activated neocarzinostatin chromophore drug‐bulged DNA complex studied using electrospray ionization mass spectrometry

Bio-affinity characterization mass spectrometry

scholarly article by James E. Bruce et al published 1995 in Rapid Communications in Mass Spectrometry

Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics

scientific article

Blood peptidome-degradome profile of breast cancer

scientific article

Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells.

scientific article

CD90/THY1 is overexpressed in prostate cancer-associated fibroblasts and could serve as a cancer biomarker

scientific article

Capillary Isoelectric Focusing of Yeast Cells

scientific article published on 01 October 2000

Capillary Isoelectric Focusing−Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry for Protein Characterization

scientific article published on 01 August 1998

Capillary LC Coupled with High-Mass Measurement Accuracy Mass Spectrometry for Metabolic Profiling

scientific article published in 2007

Capillary column supercritical fluid chromatography mass spectrometry

article

Capillary electrophoresis fourier transform ion cyclotron resonance mass spectrometry with sustained off-resonance irradiation for the characterization of protein and peptide mixtures

scientific article published in October 1994

Capillary electrophoresis-electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for direct analysis of cellular proteins

scientific article published in April 1995

Capillary electrophoresis-electrospray ionization-mass spectrometry

Capillary electrophoresis/mass spectrometry

scholarly article by Richard D. Smith et al published July 1993 in Analytical Chemistry

Capillary isotachophoresis with UV and tandem mass spectrometric detection for peptides and proteins

Capillary isotachophoresis-nanoelectrospray ionization-selected reaction monitoring MS via a novel sheathless interface for high sensitivity sample quantification

scientific article published on 08 July 2013

Capillary isotachophoresis/mass spectrometry

scientific article published in 1989

Capillary supercritical fluid chromatography/mass spectrometry with electron impact ionization

scientific article published in 1984

Capillary supercritical fluid chromatography—mass spectrometry

Capillary zone electrophoresis and isotachophoresis— mass spectrometry of polypeptides and proteins based upon an electrospray ionization interface

scientific article published on 01 October 1989

Capillary zone electrophoresis of fuel materials

Capillary zone electrophoresis-MS

scientific article published in Nature

Capillary zone electrophoresis-mass spectrometry using an electrospray ionization interface

scientific article published in 1988

Capillary-based multi nanoelectrospray emitters: improvements in ion transmission efficiency and implementation with capillary reversed-phase LC-ESI-MS

scientific article published on 29 November 2007

Carbon ion reactions with ethylene and propylene oxide

Carbonic Anhydrase-Inhibitor Binding: From Solution to the Gas Phase

scientific article published in 1997

Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells

scientific article published on 28 December 2018

Cerebrospinal Fluid Proteome of Patients with Acute Lyme Disease ⬇️

scientific article published on August 31, 2012

Characterization and formation of submicron particles in coal-fired plants

article

Characterization of Cytochrome c Variants with High-Resolution FTICR Mass Spectrometry: Correlation of Fragmentation and Structure

scientific article published on 01 July 1995

Characterization of Hydrogen-Bonded Aggregates in Chloroform by Electrospray Ionization Mass Spectrometry

Characterization of PCR Products from Bacilli Using Electrospray Ionization FTICR Mass Spectrometry

scientific article published on 01 November 1996

Characterization of Purifiedc-Type Heme-Containing Peptides and Identification ofc-Type Heme-Attachment Sites inShewanellaoneidenisCytochromes Using Mass Spectrometry

scientific article published on 01 May 2005

Characterization of an Improved Electrodynamic Ion Funnel Interface for Electrospray Ionization Mass Spectrometry

scientific article published on 01 August 1999

Characterization of an Ion Mobility-Multiplexed Collision Induced Dissociation-Tandem Time-of-Flight Mass Spectrometry Approach

scientific article

Characterization of human alcohol dehydrogenase isoenzymes by capillary isoelectric focusing — mass spectrometry

scientific article published on 01 July 2000

Characterization of macaque pulmonary fluid proteome during monkeypox infection: dynamics of host response

scientific article

Characterization of metastable intermediates of enzymatic peroxidation of NAD+ by on-line capillary electrophoresis/electrospray ionization mass spectrometry

Characterization of microdialysis acidification for capillary isoelectric focusing-microelectrospray ionization mass spectrometry.

scientific article

Characterization of micron-size flyash particles by X-ray photoelection spectroscopy (ESCA)

Characterization of microorganisms and biomarker development from global ESI-MS/MS analyses of cell lysates.

scientific article

Characterization of noncovalent complexes formed between minor groove binding molecules and duplex DNA by electrospray ionization-mass spectrometry

scientific article

Characterization of ribonuclease B heterogeneity and the identification and removal of phosphate adducts by high resolution electrospray ionization Fourier transform ion clylotron resonance mass spectrometry

Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments

scientific article

Characterization of the human blood plasma proteome

scholarly article by Yufeng Shen published in October 2005

Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS

scientific article

Characterization of the microdialysis junction interface for capillary electrophoresis/microelectrospray ionization mass spectrometry

scientific article

Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment

scientific article published on February 2006

Characterization of the mouse bronchoalveolar lavage proteome by micro-capillary LC-FTICR mass spectrometry

scientific article published on 14 February 2008

Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues

scientific article published on 21 June 2008

Characterizing the Structures and Folding of Free Proteins Using 2-D Gas-Phase Separations: Observation of Multiple Unfolded Conformers

scientific article published in 2006

Charge Capacity Limitations of Radio Frequency Ion Guides in Their Use for Improved Ion Accumulation and Trapping in Mass Spectrometry

scientific article published on 01 March 2000

Charge State Reduction of Oligonucleotide Negative Ions from Electrospray Ionization

scientific article published in 1995

Charge competition and the linear dynamic range of detection in electrospray ionization mass spectrometry

scientific article published on October 2004

Charge effects for differentiation of oligodeoxynucleotide isomers containing 8-oxo-dG residues

scientific article published in March 2002

Charge state specific facile gas-phase cleavage of Asp 75-met 76 peptide bond in the α-chain of human apohemoglobin probed by electrospray ionization mass spectrometry

scientific article published on 01 November 1994

Charge-state reduction with improved signal intensity of oligonucleotides in electrospray ionization mass spectrometry

scientific article published on 01 August 1996

Charge-state shifting of individual multiply-charged ions of bovine albumin dimer and molecular weight determination using an individual-ion approach

scientific article published in July 1994

Chemical ionization mass spectra of high molecular weight, biologically active compounds produced following supercritical fluid chromatography

scientific article published in February 1988

Chemical ionization mass spectrometry as a tool for the elimination of surface related phenomena in the spectra of unstable compounds

scientific article published in 1978

Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry

scientific article published on November 2006

Clinical microfluidics for neutrophil genomics and proteomics.

scientific article

Clustering millions of tandem mass spectra

scientific article published on 8 December 2007

Collisional activation and collision-activated dissociation of large multiply charged polypeptides and proteins produced by electrospray ionization.

scientific article

Collisional activation and dissociation of large multiply charged proteins produced by electrospray ionization

Collisional activation of ions in RF ion traps and ion guides: The effective ion temperature treatment

scientific article published on 01 November 2004

Collisionally activated dissociation and tandem mass spectrometry of intact hemoglobin β-chain variant proteins with electrospray ionization

scholarly article by Karen J. Light-Wahl et al published February 1993 in Journal of Mass Spectrometry

Combined pulsed-Q dissociation and electron transfer dissociation for identification and quantification of iTRAQ-labeled phosphopeptides

scientific article published on May 2009

Combining capillary electrophoresis with mass spectrometry for applications in proteomics

scientific article

Comparative analysis of proteome and transcriptome variation in mouse

scientific article

Comparative bacterial proteomics: analysis of the core genome concept

scientific article

Comparative omics-driven genome annotation refinement: application across Yersiniae

scientific article

Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection

scientific article published on 22 August 2013

Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

scientific article

Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.

scientific article published on February 2005

Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions

scientific article published on 19 January 2008

Comparison of 3′,5′- and 2′,5′-linked DNA duplex stabilities by electrospray ionization mass spectrometry

Comparison of Chloroflexus aurantiacus strain J-10-fl proteomes of cells grown chemoheterotrophically and photoheterotrophically

scientific article published on 17 January 2012

Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes

scientific article published on 7 July 2006

Comparison of normal and breast cancer cell lines using proteome, genome, and interactome data

scientific article

Complex formation in the C+(2P)+CH4 reaction at 0.1 to 10 eV

article

Comprehensive identification of glycated peptides and their glycation motifs in plasma and erythrocytes of control and diabetic subjects

scientific article

Compression Ratio Ion Mobility Programming (CRIMP) Accumulation and Compression of Billions of Ions for Ion Mobility-Mass Spectrometry Using Traveling Waves in Structures for Lossless Ion Manipulations (SLIM).

scientific article published on 12 May 2017

Concentration dependence upon particle size of volatilized elements in fly ash

article by Richard D. Smith et al published May 1979 in Environmental Science & Technology

Confirmation and quantitation of hydroxymethanesulfonate in precipitation by electrospray ionization-tandem mass spectrometry

Confirmation of the expression of a large set of conserved hypothetical proteins in Shewanella oneidensis MR-1.

scientific article published on 18 January 2006

Confounding effect of obstructive jaundice in the interpretation of proteomic plasma profiling data for pancreatic cancer

scientific article

Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium

scientific article published on October 2013

Considerations for electron capture dissociation efficiency in FTICR mass spectrometry

Control of ion distortion in field asymmetric waveform ion mobility spectrometry via variation of dispersion field and gas temperature

scientific article published on 27 August 2008

Controlled dispensing and mixing of pico- to nanoliter volumes using on-demand droplet-based microfluidics

scientific article published on July 2013

Controlled ion fragmentation in a 2-D quadrupole ion trap for external ion accumulation in ESI FTICR mass spectrometry

scientific article published in December 2001

Correction to Comparative Proteomics of Human Monkeypox and Vaccinia Intracellular Mature and Extracellular Enveloped Virions

scholarly article published in Journal of Proteome Research

Correction to Identification of c-Type Heme-Containing Peptides Using Nonactivated Immobilized Metal Affinity Chromatography Resin Enrichment and Higher-Energy Collisional Dissociation

scholarly article published in Analytical Chemistry

Correlation between the Charge of Proteins in Solution and in the Gas Phase Investigated by Protein Charge Ladders, Capillary Electrophoresis, and Electrospray Ionization Mass Spectrometry

Correlaton of solvatochromic effects with retention in supercritical fluid chromatography

Coulombic effects in ion mobility spectrometry

scientific article published on June 2009

Coulombic effects in the dissociation of large highly charged ions

Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes

scientific article

Cyclotron motion of two Coulombically interacting ion clouds with implications to Fourier-transform ion cyclotron resonance mass spectrometry

scientific article published on 01 October 1995

DAnTE: a statistical tool for quantitative analysis of -omics data.

scientific article

DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data

scientific article published in 2022

DanteR: an extensible R-based tool for quantitative analysis of -omics data

scientific article

De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins

scientific article published on 11 September 2008

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

scientific article

DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

scientific article

Deep-Dive Targeted Quantification for Ultrasensitive Analysis of Proteins in Nondepleted Human Blood Plasma/Serum and Tissues.

scientific article published on 20 July 2017

Design and Performance of an ESI Interface for Selective External Ion Accumulation Coupled to a Fourier Transform Ion Cyclotron Mass Spectrometer

scientific article published on 01 January 2001

Design and Self-Assembly of Nanoscale Organoplatinum Macrocycles

article by Joseph Manna et al published January 1996 in Journal of the American Chemical Society

Detection and identification of heme c-modified peptides by histidine affinity chromatography, high-performance liquid chromatography-mass spectrometry, and database searching

scientific article published on 2 November 2012

Detection of high molecular weight starburst dendrimers by electrospray ionization mass spectometry

scholarly article by Brenda L. Schwartz et al published 1995 in Rapid Communications in Mass Spectrometry

Detection of hydrogen-bonded supramolecular complexes using electrospray ionization from chloroform

scholarly article by Xueheng Cheng et al published 1995 in Rapid Communications in Mass Spectrometry

Detection of in situ labeled cell surface proteins by mass spectrometry: application to the membrane subproteome of human mammary epithelial cells

scientific article published in August 2003

Determination of burn patient outcome by large-scale quantitative discovery proteomics

scientific article published on June 2013

Development and evaluation of a micro- and nanoscale proteomic sample preparation method

scientific article published on November 2005

Development of a fibrinogen-specific sandwich enzyme-linked immunosorbent assay microarray assay for distinguishing between blood plasma and serum samples

scientific article

Diesel fuel marine and sediment analysisSupercritical ammonia extraction and direct fluid injection — mass spectrometry

Differential Label-free Quantitative Proteomic Analysis of Shewanella oneidensis Cultured under Aerobic and Suboxic Conditions by Accurate Mass and Time Tag Approach

article

Differential ion mobility separations in up to 100% helium using microchips

scientific article

Differential ion mobility separations of peptides with resolving power exceeding 50.

scientific article

Dilution-free analysis from picoliter droplets by nano-electrospray ionization mass spectrometry

scientific article

Direct Charge Number and Molecular Weight Determination of Large Individual Ions by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

scientific article published in 1994

Direct Electrospray Ion Current Monitoring Detection and Its Use with Online Capillary Electrophoresis Mass Spectrometry

scientific article published in 1995

Direct Mass Spectrometric Analysis of Supercritical Fluid Extraction Products

Direct fluid injection interface for capillary supercritical fluid chromatography-mass spectrometry

Direct mass spectrometric analysis of intact proteins of the yeast large ribosomal subunit using capillary LC/FTICR.

scientific article published on 30 April 2002

Direct measurement of oligonucleotide binding stoichiometry of gene V protein by mass spectrometry.

scientific article

Direct observation of a DNA quadruplex by electrospray ionization mass spectrometry

scientific article published in March 1993

Direct supercritical fluid injection mass spectrometry of trichothecenes

scholarly article by Richard D. Smith & Harold R. Udseth published October 1983 in Journal of Mass Spectrometry

Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics

scientific article

Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants

scientific article

Disparate proteome responses of pathogenic and nonpathogenic aspergilli to human serum measured by activity-based protein profiling (ABPP).

scientific article published on 18 April 2013

Dissociation behavior of doubly-charged tryptic peptides: correlation of gas-phase cleavage abundance with ramachandran plots

scientific article published in March 2004

Dissociation of tetrameric ions of noncovalent streptavidin complexes formed by electrospray ionization

scientific article published in June 1995

Distinct cerebrospinal fluid proteomes differentiate post-treatment lyme disease from chronic fatigue syndrome

scientific article

Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations

scientific article published on 17 September 2018

Distortion of ion structures by field asymmetric waveform ion mobility spectrometry

scientific article published in February 2007

Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142.

scientific article

Does trypsin cut before proline?

scientific article

DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets

scientific article

Dual Polarity Ion Confinement and Mobility Separations

scientific article published on 04 March 2019

Dual spatial maps of transcript and protein abundance in the mouse brain

scientific article published on June 2009

Dynamic Proteome Analysis of Cyanothece sp. ATCC 51142 under Constant Light

article

Dynamic host energetics and cytoskeletal proteomes in human immunodeficiency virus type 1-infected human primary CD4 cells: analysis by multiplexed label-free mass spectrometry

scientific article published on 08 July 2009

Dynamic light scattering measurements of reverse micelle phases in liquid and supercritical ethane

article published in 1988

Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles

scientific article

Dynamic range expansion applied to mass spectrometry based on data-dependent selective ion ejection in capillary liquid chromatography fourier transform ion cyclotron resonance for enhanced proteome characterization.

scientific article

Dynamically assisted gated trapping for Fourier transform ion cyclotron mass spectrometry

scientific article published on 01 January 2001

Dynamically multiplexed ion mobility time-of-flight mass spectrometry

scientific article

ESI-FTICR mass spectrometry employing data-dependent external ion selection and accumulation.

scientific article

Ecological distribution and population physiology defined by proteomics in a natural microbial community.

scientific article

Editorial: Electrophoresis 18/2002

Effect of denisty on enthalpy and entropy of transfer for supercritical fluid chroamtography

Effect of pressure on electrospray characteristics

scientific article published on 6 November 2009

Effect of reducing disulfide-containing proteins on electrospray ionization mass spectra

scientific article published on 01 April 1990

Effect of solute concentration on retention in supercritical fluid chromatography

article published in 1987

Effect of temperature and modifier concentration on retention in supercritical fluid chromatography

Effect of the partial molar volume of the solute in the stationary phase on retention in supercritical fluid chromatography

article by Clement R. Yonker & Richard D. Smith published January 1988 in Journal of Chromatography

Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods

scientific article

Effects of pressure on retention in supercritical fluid chromatography

Elastomeric microchip electrospray emitter for stable cone-jet mode operation in the nanoflow regime

scientific article published on 18 April 2008

Electrospray characteristic curves: in pursuit of improved performance in the nanoflow regime

scientific article published on 27 September 2007

Electrospray ionization Fourier transform ion cyclotron resonance analysis of large polymerase chain reaction products

scientific article published in April 2000

Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometric analysis of the recombinant human macrophage colony stimulating factor β and derivatives

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PRISM: a data management system for high-throughput proteomics

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Packed Capillary Reversed-Phase Liquid Chromatography with High-Performance Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry for Proteomics

scientific article published on 01 April 2001

Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.

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Pendular proteins in gases and new avenues for characterization of macromolecules by ion mobility spectrometry

scholarly article

Peptide and protein analysis by electrospray ionization-mass spectrometry and capillary electrophoresis-mass spectrometry

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Peptide orientation affects selectivity in ion-exchange chromatography

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Performance of capillary restrictors in supercritical fluid chromatography

scientific article published in 1986

Perturbations in the lipid profile of individuals with newly diagnosed type 1 diabetes mellitus: lipidomics analysis of a Diabetes Antibody Standardization Program sample subset

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Phase behavior of inverse microemulsions for the polymerization of acrylamide in near-critical and supercritical continuous phases

Phosphate-containing polyethylene glycol polymers prevent lethal sepsis by multidrug-resistant pathogens

scientific article published on 25 November 2013

Phosphopeptide elution times in reversed-phase liquid chromatography

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Phosphoprotein Isotope-Coded Affinity Tags: Application to the Enrichment and Identification of Low-Abundance Phosphoproteins

scientific article published on 01 February 2002

Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses

scientific article published in June 2001

Phosphoprotein isotope-coded solid-phase tag approach for enrichment and quantitative analysis of phosphopeptides from complex mixtures.

scientific article published on October 2003

Phosphoproteome profiling of human skin fibroblast cells in response to low- and high-dose irradiation

scientific article published in May 2006

Phosphoproteomics profiling of human skin fibroblast cells reveals pathways and proteins affected by low doses of ionizing radiation

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Physical/chemical separations in the break-up of highly charged droplets from electrosprays

scientific article published on 01 March 2001

Picoelectrospray ionization mass spectrometry using narrow-bore chemically etched emitters

scientific article published on January 2014

Plasma biomarkers for detecting Hodgkin's lymphoma in HIV patients.

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Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics

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Post-translational modifications of chicken myelin basic protein charge components.

scientific article published on 10 July 2008

Preparation of 20-μm-i.d. Silica-Based Monolithic Columns and Their Performance for Proteomics Analyses

scientific article published in 2005

Preservation of non-covalent associations in electrospray ionization mass spectrometry: Multiply charged polypeptide and protein dimers

scholarly article by Richard D. Smith et al published July 1992 in Journal of Mass Spectrometry

Pressure and composition gradients in capillary supercritical fluid chromatography

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Pressure effects on the phase behavior of a propylene/water/surfactant mixture

Pressure limited sustained off-resonance irradiation for collision-activated dissociation in fourier transform mass spectrometry.

scientific article published in January 1999

Pressure programmed microbore column supercritical fluid chromatography-mass spectrometry for the determination of organophosphorus insecticides

scientific article published in March 1988

Pressure programming in supercritical fluid chromatography

scientific article published on 01 April 1985

Pressurized pepsin digestion in proteomics: an automatable alternative to trypsin for integrated top-down bottom-up proteomics

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Principles and practice of electrospray ionization—mass spectrometry for large polypeptides and proteins

scholarly article by Richard D. Smith et al published September 1991 in Mass Spectrometry Reviews

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome

scientific article published in January 2005

Probing Proteomes Using Capillary Isoelectric Focusing-Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

scientific article published on 01 June 1999

Probing RegA/RNA interactions using electrospray ionization-fourier transform ion cyclotron resonance-mass spectrometry.

scientific article published in August 1998

Probing proteomes—seeing the whole picture?

Probing the energetics of dissociation of carbonic anhydrase-ligand complexes in the gas phase.

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Production of H2O2 in hydrocarbon-O2CF3Br systems

Production of powders and films by the rapid expansion of supercritical solutions

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Profiling signaling polarity in chemotactic cells.

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Proofreading activity of Pfu thermostable DNA polymerase on a 6-O-methylguanine-containing template monitored by ESI-FTICR mass spectrometry.

scientific article published in July 2004

Protein analyses using differential ion mobility microchips with mass spectrometry

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Protein co-expression network analysis (ProCoNA).

scientific article published on June 2013

Protein identification using top-down.

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Protein identification with a single accurate mass of a cysteine-containing peptide and constrained database searching

scientific article published on March 2000

Proteogenomic analysis of bacteria and archaea: a 46 organism case study

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Proteogenomics: needs and roles to be filled by proteomics in genome annotation

scientific article published on January 2008

Proteome analyses of strains ATCC 51142 and PCC 7822 of the diazotrophic cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced H₂ production

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Proteome analyses using accurate mass and elution time peptide tags with capillary LC time-of-flight mass spectrometry

scientific article published on September 2003

Proteome analysis by mass spectrometry

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Proteome analysis of Borrelia burgdorferi response to environmental change

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Proteome analysis of DNA damage-induced neuronal death using high throughput mass spectrometry

scientific article published in April 2004

Proteome analysis of camptothecin-treated cortical neurons using isotope-coded affinity tags

scientific article published in June 2002

Proteome analysis of liver cells expressing a full-length hepatitis C virus (HCV) replicon and biopsy specimens of posttransplantation liver from HCV-infected patients

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Proteome analysis using selective incorporation of isotopically labeled amino acids

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Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation

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Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer

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Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome

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Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor

scientific article published on 25 June 2008

Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags

scientific article published on 14 February 2008

Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive NanoLC-MS

scientific article published on 14 June 2018

Proteomic Profiling of Intact Proteins Using WAX-RPLC 2-D Separations and FTICR Mass Spectrometry

Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression

scientific article published on 17 May 2020

Proteomic analysis of Lyme disease: global protein comparison of three strains of Borrelia burgdorferi

scientific article published in April 2005

Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages

scientific article published on 7 August 2006

Proteomic analysis of bronchoalveolar lavage fluid proteins from mice infected with Francisella tularensis ssp. novicida

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Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique".

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Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

scientific article published on 15 May 2015

Proteomic and transcriptomic analyses of "Candidatus Pelagibacter ubique" describe the first PII-independent response to nitrogen limitation in a free-living Alphaproteobacterium

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Proteomic approaches to bacterial differentiation

scientific article published on 17 August 2006

Proteomic biomarkers in plasma that differentiate rapid and slow decline in lung function in adult cigarette smokers with chronic obstructive pulmonary disease (COPD).

scientific article published on 5 May 2010

Proteomic characterization of nipple aspirate fluid: identification of potential biomarkers of breast cancer

scientific article published on July 2003

Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling

scientific article published on 11 December 2013

Proteomic investigation of the time course responses of RAW 264.7 macrophages to infection with Salmonella enterica

scientific article published on 15 June 2009

Proteomic profiling of human liver biopsies: hepatitis C virus-induced fibrosis and mitochondrial dysfunction

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Proteomic profiling of nonenzymatically glycated proteins in human plasma and erythrocyte membranes

scientific article published on 09 April 2008

Proteomics analysis of the causative agent of typhoid fever

scientific article published on January 2008

Proteomics based on high-efficiency capillary separations

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Proteomics by FTICR mass spectrometry: top down and bottom up

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Proton transfer reactions of multiply charged peptide and protein cations and anions

Proton- and deuteron-transfer reactions to ethane and ethane-d6: Internal-energy effects in the formation and decomposition of C2H7+

Pseudorandom sequence modifications for ion mobility orthogonal time-of-flight mass spectrometry

scientific article published on March 2008

Pulsed multiple reaction monitoring approach to enhancing sensitivity of a tandem quadrupole mass spectrometer

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QC-ART: A tool for real-time quality control assessment of mass spectrometry-based proteomics data

scientific article published on 17 April 2018

Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues.

scientific article published on 10 November 2017

Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-metabolic labeling

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Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling.

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Quantitative analysis of human immunodeficiency virus type 1-infected CD4+ cell proteome: dysregulated cell cycle progression and nuclear transport coincide with robust virus production

scientific article published on 9 May 2007

Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography.

scientific article published on 12 September 2008

Quantitative phosphoproteomics identifies filaggrin and other targets of ionizing radiation in a human skin model.

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Quantitative proteome analysis of breast cancer cell lines using 18O-labeling and an accurate mass and time tag strategy

scientific article published on May 2006

Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach.

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Quantitative proteomic approaches for studying phosphotyrosine signaling.

scientific article published on February 2007

Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size

scientific article published on 4 November 2011

Quantitative site-specific reactivity profiling of S-nitrosylation in mouse skeletal muscle using cysteinyl peptide enrichment coupled with mass spectrometry

scientific article published on 28 December 2012

RNA type III secretion signals that require Hfq

scientific article published on 8 February 2013

Radial stratification of ions as a function of mass to charge ratio in collisional cooling radio frequency multipoles used as ion guides or ion traps

scholarly article by Aleksey V. Tolmachev et al published 30 October 2000 in Rapid Communications in Mass Spectrometry

Rapid Calculation of Isotope Distributions

scientific article published in 1995

Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations

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Rapid and Simultaneous Characterization of Drug Conjugation in Heavy and Light Chains of a Monoclonal Antibody Revealed by High-Resolution Ion Mobility Separations in SLIM

scientific article published on 17 March 2020

Rapid and efficient capillary column supercritical fluid chromatography with mass spectrometric detection

scientific article published in 1984

Rapid and efficient protein digestion using trypsin-coated magnetic nanoparticles under pressure cycles

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Rapid expansion of supercritical fluid solutions: solute formation of powders, thin films, and fibers

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Rapid precipitation of low vapor pressure solids from supercritical fluid solutions: the formation of thin films and powders

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Rapid quantitative measurements of proteomes by Fourier transform ion cyclotron resonance mass spectrometry

scientific article published on 01 May 2001

Rapid sample processing for LC-MS-based quantitative proteomics using high intensity focused ultrasound

scientific article published on 08 August 2008

Reaction of hydrodinitrogen(1+) with methanol. Internal energy effects in proton transfer reactions

Reactions of CH3+ (CD3+) with C3H6O isomers

scientific article published in 1977

Reactions of KrH+ and O2H+ with CH4, C2H4, C2H6 and NH3

Reactions of [CH3]+ and [CD3]+ with alcohols

scholarly article by Richard D. Smith & Jean H. Futrell published December 1978 in Journal of Mass Spectrometry

Reactions of rare-gas hydride ions with ethylene

Reactions of thermal energy (2P)C+ ions with several molecules

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)

scientific article

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles).

scientific article published on 3 November 2011

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).

scientific article published on 14 December 2011

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).

scientific article published in December 2011

Reduced elution speed detection for capillary electrophoresis/mass spectrometry

Reevaluation of the coding potential and proteomic analysis of the BAC-derived rhesus cytomegalovirus strain 68-1.

scientific article

Region-specific protein abundance changes in the brain of MPTP-induced Parkinson's disease mouse model

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Regulation of the low-dose radiation paracrine-specific anchorage-independent growth response by annexin A2.

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Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells

scientific article published on 30 January 2013

Resin-assisted enrichment of N-terminal peptides for characterizing proteolytic processing.

scientific article published on 27 June 2013

Resin-assisted enrichment of thiols as a general strategy for proteomic profiling of cysteine-based reversible modifications

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Retention in supercritical fluid chromatography: influence of the partial molar volume of the solute in the stationary phase

article by Clement R. Yonker & Richard D. Smith published March 1988 in The journal of physical chemistry

Retrieval of DNA Using Soft-Landing after Mass Analysis by ESI-FTICR for Enzymatic Manipulation

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Reverse Micelle Supercritical Fluid Separations

Reverse micelle and microemulsion phases in supercritical fluids

Reverse micelle and microemulsion phases in supercritical xenon and ethane: light scattering and spectroscopic probe studies

scholarly article by John L. Fulton et al published May 1989 in The journal of physical chemistry

Reverse micelle supercritical fluid chromatography

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Reverse micelles and microemulsions in near-critical and supercritical fluids

Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells

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Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics

scientific article published on 22 April 2015

Ribbon storage techniques for liquid chromatography-mass spectrometry

scientific article published in 1981

Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline

scientific article

Robust trypsin coating on electrospun polymer nanofibers in rigorous conditions and its uses for protein digestion

SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes

scientific article published on 06 September 2019

STEPS: a grid search methodology for optimized peptide identification filtering of MS/MS database search results

scientific article published on 4 February 2013

Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes ⬇️

scientific article published on 5 April 2013

Sample introduction and separation in capillary electrophoresis, and combination with mass spectrometric detection

scientific article published on 01 January 1989

Scaling of the resolving power and sensitivity for planar FAIMS and mobility-based discrimination in flow- and field-driven analyzers

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Secondary ion reactions in benzene

Selected ion accumulation of noncovalent complexes in a fourier transform ion cyclotron resonance mass spectrometer

article published in 1995

Selected-ion accumulation from an external electrospray ionization source with a fourier-transform ion cyclotron resonance mass spectrometer

scholarly article by James E. Bruce et al published October 1993 in Rapid Communications in Mass Spectrometry

Selection of the optimum electrospray voltage for gradient elution LC-MS measurements

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Selective incorporation of isotopically labeled amino acids for identification of intact proteins on a proteome-wide level

scientific article published in January 2002

Sensitive immunoassays of nitrated fibrinogen in human biofluids

scientific article published on 19 March 2010

Sensitivity considerations for large molecule detection by capillary electrophoresis-electrospray ionization mass spectrometry

scientific article published on 01 September 1990

Sensitivity enhancement of electrospray ionization-MS for aqueous solutions in the corona-assisted cone-jet mode

article published in 1997

Separation and Detection of Intact Noncovalent Protein Complexes from Mixtures by On-Line Capillary Isoelectric Focusing-Mass Spectrometry

scientific article published on 01 November 2000

Separation and classification of lipids using differential ion mobility spectrometry

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Separation of a set of peptide sequence isomers using differential ion mobility spectrometry

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Separation of peptide isomers with variant modified sites by high-resolution differential ion mobility spectrometry

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Separation of protein conformers by differential ion mobility in hydrogen-rich gases

scientific article published on 25 June 2013

Separation of variant methylated histone tails by differential ion mobility

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Separation of β-Amyloid Tryptic Peptide Species with Isomerized and Racemized l-Aspartic Residues with Ion Mobility in Structures for Lossless Ion Manipulations.

scientific article published on 12 March 2019

Serpentine Ultralong Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations

scientific article published on 23 March 2017

Serum proteomics reveals systemic dysregulation of innate immunity in type 1 diabetes

scientific article published on 31 December 2012

Sheathless capillary electrophoresis-electrospray ionization mass spectrometry using 10 μm I.D. capillaries: Analyses of tryptic digests of cytochrome c

scientific article published on 01 January 1994

Shotgun proteomics identifies proteins specific for acute renal transplant rejection.

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Simple sodium dodecyl sulfate-assisted sample preparation method for LC-MS-based proteomics applications

scientific article published on 2 March 2012

Simulation of ion motion in FAIMS through combined use of SIMION and modified SDS.

scientific article published on November 2009

Simulation-based optimization of the electrodynamic ion funnel for high sensitivity electrospray ionization mass spectrometry

Simultaneous fragmentation of multiple ions using IMS drift time dependent collision energies

scientific article published on 4 December 2007

Site-specific proteomics approach for study protein S-nitrosylation

scientific article published on September 2010

Slow ionic metastable processes as a probe for quantum mechanical tunneling

Slow metastable decomposition of methane and deuterated methanes molecular ions

Slow metastable transitions in aromatic species

scholarly article by Richard D. Smith & Jean H. Furtell published May 1976 in Journal of Mass Spectrometry

Small volume and low flow-rate electrospray lonization mass spectrometry of aqueous samples

scholarly article by David C. Gale & Richard D. Smith published November 1993 in Rapid Communications in Mass Spectrometry

Solubilities in Supercritical Fluids: The Application of Chromatographic Measurement Methods

Solubilities of caffeine and theophylline in supercritical ammonia

Solvent-induced conformational changes of polypeptides probed by electrospray-ionization mass spectrometry

scientific article published on March 1991

Sorption isotherms in supercritical fluid chromatography

Sorption isotherms of mobile phase components in capillary supercritical fluid chromatography

Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis

scientific article published on 10 April 2013

Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry

scientific article published on 25 January 2007

Spatial mapping of the neurite and soma proteomes reveals a functional Cdc42/Rac regulatory network

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Spatial phosphoprotein profiling reveals a compartmentalized extracellular signal-regulated kinase switch governing neurite growth and retraction

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Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets

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Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation

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Specific metal-oligonucleotide binding studied by high resolution tandem mass spectrometry

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Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice

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Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra

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Spectroscopic studies of metal chelates in supercritical fluids

Stable isotope-coded proteomic mass spectrometry

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Stationary phase solvation in capillary supercritical fluid chromatography

article by Clement R. Yonker & Richard D. Smith published July 1989 in Analytical Chemistry

Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns

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Stepwise Mobilization of Focused Proteins in Capillary Isoelectric Focusing Mass Spectrometry

scientific article published on 01 April 2000

Storage stability of diesel fuel marine: relation to e.s.r. measurements

Strategy for degradomic-peptidomic analysis of human blood plasma

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Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry

scientific article published on 7 March 2017

Study of retention processes in capillary supercritical fluid chromatography with binary fluid mobile phases

Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling

scientific article published on January 2013

Subambient pressure ionization with nanoelectrospray source and interface for improved sensitivity in mass spectrometry

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Suite of activity-based probes for cellulose-degrading enzymes

scientific article (publication date: 19 December 2012)

Supercritical Fluid Technologies for Ceramic-Processing Applications

Supercritical fluid chromatography - mass spectrometry

Supercritical fluid chromatography and supercritical fluid chromatography—mass spectrometry of marine diesel fuel

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Supercritical fluid chromatography-mass spectrometry: A potentially useful technique for porphyrin analysis

Supercritical fluid extraction and direct fluid injection mass spectrometry for the determination of trichothecene mycotoxins in wheat samples

scientific article published on 01 October 1986

Suppression of the lower charge state ions in the external accumulation RF multipole with a reduced trapping DC potential

scientific article published on 01 November 2003

Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics

scientific article published on 01 March 2021

Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella

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Systems virology identifies a mitochondrial fatty acid oxidation enzyme, dodecenoyl coenzyme A delta isomerase, required for hepatitis C virus replication and likely pathogenesis

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Tailored noise waveform/collision-induced dissociation of ions stored in a linear ion trap combined with liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry.

scientific article published in January 2004

Tandem Mass Tag Labeling Facilitates Reversed-Phase Liquid Chromatography-Mass Spectrometry Analysis of Hydrophilic Phosphopeptides

scientific article published on 28 August 2019

Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets

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Tandem mass spectrometry of highly charged cytochrome c molecular ions produced by electrospray ionization

Tandem mass spectrometry of very large molecules. 2. Dissociation of multiply charged proline-containing proteins from electrospray ionization

scientific article published on 01 February 1993

Tandem mass spectrometry of very large molecules: serum albumin sequence information from multiply charged ions formed by electrospray ionization.

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Targeted Quantification of Phosphorylation Dynamics in the Context of EGFR-MAPK Pathway.

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Targeted comparative proteomics by liquid chromatography-tandem Fourier ion cyclotron resonance mass spectrometry.

scientific article published on January 2005

Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics.

scientific article published on 16 January 2007

Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer

scientific article published on 19 July 2017

Targeted quantification of low ng/mL level proteins in human serum without immunoaffinity depletion

scientific article published on 13 June 2013

Targeted tandem mass spectrometry for high-throughput comparative proteomics employing NanoLC-FTICR MS with external ion dissociation

scientific article published in 2007

Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics

scientific article (publication date: 2010)

The formation of polymer fibers from the rapid expansion of supercritical fluid solutions

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The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation

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The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery

scientific article published on June 2007

The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle

scholarly article

The genome organization of Thermotoga maritima reflects its lifestyle

scientific article published in April 2013

The identification of novel potential injury mechanisms and candidate biomarkers in renal allograft rejection by quantitative proteomics

scientific article published on 12 December 2013

The influence of sample preparation and replicate analyses on HeLa Cell phosphoproteome coverage

scientific article published on 16 April 2008

The interface of capillary electrophoresis with high performance fourier transform ion cyclotron resonance mass spectrometry for biomolecule characterization

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The ion funnel: theory, implementations, and applications

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The laser ablation ion funnel: Sampling for in situ mass spectrometry on Mars

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The mammary epithelial cell secretome and its regulation by signal transduction pathways

scientific article published in January 2008

The metastable dissociation of C3H8+ at long times in a tandem ICR mass spectrometer

article published in 1975

The observation of non-covalent interactions in solution by electrospray ionization mass spectrometry: Promise, pitfalls and prognosis

scholarly article by Richard D. Smith & Karen J. Light-Wahl published September 1993 in Journal of Mass Spectrometry

The preparation of polycarbosilane powders and fibers during rapid expansion of supercritical fluid solutions

article published in 1986

The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions

scientific article published on 16 May 2006

The trace element chemistry of coal during combustion and the emissions from coal-fired plants

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The use of a stable internal mass standard for accurate mass measurements of oligonucleotide fragment ions using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry with infrared multiphoton dissociation

scholarly article by Steven A. Hofstadler et al published 15 October 1998 in Rapid Communications in Mass Spectrometry

The use of accurate mass tags for high-throughput microbial proteomics

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The use of enhanced recovery after surgery (ERAS) principles in Scottish orthopaedic units--an implementation and follow-up at 1 year, 2010-2011: a report from the Musculoskeletal Audit, Scotland

scientific article published on 16 October 2012

The utility of accurate mass and LC elution time information in the analysis of complex proteomes

scientific article published on August 2005

Theoretical and experimental evaluation of the low m/z transmission of an electrodynamic ion funnel

scientific article published on 28 February 2006

Theoretical prediction of charged droplet evaporation and fission in electrospray ionization

Thermally induced dissociation of ions from electrospray mass spectrometry

scholarly article by Alan L. Rockwood et al published December 1991 in Rapid Communications in Mass Spectrometry

Thermochromic shifts in supercritical fluids

Time-base modulation for the correction of cyclotron frequency shifts observed in long-lived transients from fourier-transform ion-cyclotron-resonance mass spectrometry of electrosprayed biopolymers

scholarly article by James E. Bruce et al published August 1993 in Rapid Communications in Mass Spectrometry

Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions.

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Toward Plasma Proteome Profiling with Ion Mobility-Mass Spectrometry

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Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry

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Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique

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Transition-Metal-Mediated Rational Design and Self-Assembly of Chiral, Nanoscale Supramolecular Polyhedra with UniqueTSymmetry†

article by Peter J. Stang et al published July 1997 in Organometallics

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

scientific article published on 4 September 2008

Trapped-ion cell with improved DC potential harmonicity for FT-ICR MS

scientific article published on 31 January 2008

Trapping Radial Electric Field Optimization in Compensated FTICR Cells

article published in 2011

Trapping, Detection, and Mass Determination of Coliphage T4 DNA Ions by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

article published in 1995

Trauma-associated human neutrophil alterations revealed by comparative proteomics profiling

scientific article published on 22 May 2013

Traveling-Wave-Based Electrodynamic Switch for Concurrent Dual-Polarity Ion Manipulations in Structures for Lossless Ion Manipulations

scientific article published on 30 October 2019

Trends in mass spectrometry instrumentation for proteomics

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Trypsin coatings on electrospun and alcohol-dispersed polymer nanofibers for a trypsin digestion column

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Two dimensional many particle simulation of trapped ions

Two-dimensional electrophoretic/chromatographic separations combined with electrospray ionization FTICR mass spectrometry for high throughput proteome analysis

Two-dimensional gas-phase separations coupled to mass spectrometry for analysis of complex mixtures

scientific article published on October 2005

Two-dimensional ion mobility analyses of proteins and peptides

scientific article published in January 2009

Two-dimensional liquid chromatography system for online top-down mass spectrometry

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UNiquant, a program for quantitative proteomics analysis using stable isotope labeling

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Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome

scientific article published in February 2004

Ultra-sensitive and quantitative characterization of proteomes

scientific article published on 6 April 2006

Ultra-sensitive, high throughput and quantitative proteomics measurements

Ultrafast differential ion mobility spectrometry at extreme electric fields coupled to mass spectrometry

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Ultrafast differential ion mobility spectrometry at extreme electric fields in multichannel microchips

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Ultrahigh Resolution Isotope Distribution Calculations

scholarly article by Alan L. Rockwood et al published 15 January 1996 in Rapid Communications in Mass Spectrometry

Ultrahigh-resolution differential ion mobility spectrometry using extended separation times

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Ultrahigh-throughput proteomics using fast RPLC separations with ESI-MS/MS.

scientific article published in October 2005

Ultrasensitive and quantitative analyses from combined separations-mass spectrometry for the characterization of proteomes

scientific article published on April 2004

Ultrasensitive identification of localization variants of modified peptides using ion mobility spectrometry

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Ultrasensitive nanoelectrospray ionization-mass spectrometry using poly(dimethylsiloxane) microchips with monolithically integrated emitters

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Ultrasensitive proteomics using high-efficiency on-line micro-SPE-nanoLC-nanoESI MS and MS/MS.

scientific article published on January 2004

Ultrasensitive sample quantitation via selected reaction monitoring using CITP/CZE-ESI-triple quadrupole MS.

scientific article published on 20 November 2012

Understanding and Designing Field Asymmetric Waveform Ion Mobility Spectrometry Separations in Gas Mixtures

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Unexpected diversity of signal peptides in prokaryotes

scientific article published on 20 November 2012

UniPep--a database for human N-linked glycosites: a resource for biomarker discovery

scientific article published on 10 August 2006

Unraveling pancreatic islet biology by quantitative proteomics

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Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses

scientific article published in March 2003

Use of high-throughput mass spectrometry to elucidate host-pathogen interactions in Salmonella

scientific article published on December 2008

Use of small-diameter capillaries for increasing peptide and protein detection sensitivity in capillary electrophoresis-mass spectrometry

scientific article published on 01 May 1993

Using Electrospray Ionization FTICR Mass Spectrometry To Study Competitive Binding of Inhibitors to Carbonic Anhydrase

article published in 1995

Using size exclusion chromatography-RPLC and RPLC-CIEF as two-dimensional separation strategies for protein profiling

scientific article published on July 2006

Uterine deletion of Trp53 compromises antioxidant responses in the mouse decidua

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Utility of Accurate Mass Tags for Proteome-Wide Protein Identification

scientific article published on 01 July 2000

Utilizing human blood plasma for proteomic biomarker discovery

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VIPER: an advanced software package to support high-throughput LC-MS peptide identification

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Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis

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Variable low-mass filtering using an electrodynamic ion funnel

Variance contributions to band spread in capillary zone electrophoresis

Volatility of fly ash and coal

article by Richard D. Smith et al published September 1980 in Fuel

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

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Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry

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Zeptomole-Sensitivity Electrospray Ionization−Fourier Transform Ion Cyclotron Resonance Mass Spectrometry of Proteins

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[22] Electrospray ionization mass spectrometry

scientific article published on 01 January 1990

“Colored” Noise Waveforms and Quadrupole Excitation for the Dynamic Range Expansion of Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

scientific article published on 01 February 1996

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