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List of works by Sean W. Graham

10KP: A phylodiverse genome sequencing plan.

scientific article

A Target Capture-Based Method to Estimate Ploidy From Herbarium Specimens

scientific article published on 24 July 2019

A bi‐organellar phylogenomic study of Pandanales: inference of higher‐order relationships and unusual rate‐variation patterns

scientific article published in 2020

A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem

scientific article published on 10 April 2019

A customized nuclear target enrichment approach for developing a phylogenomic baseline for Dioscorea yams (Dioscoreaceae).

scientific article

A few-gene plastid phylogenetic framework for mycoheterotrophic monocots.

scientific article

A new carnivorous plant lineage (<i>Triantha</i>) with a unique sticky-inflorescence trap

scientific article published in 2021

A transcriptome-based resolution for a key taxonomic controversy in Cupressaceae

scientific article published on 01 January 2019

A transcriptome-based resolution for a key taxonomic controversy in Cupressaceae.

scientific article published in January 2019

Afrothismiaceae (Dioscoreales), a new fully mycoheterotrophic family endemic to tropical Africa

Afrothismiaceae (Dioscoreales), a new fully mycoheterotrophic family endemic to tropical Africa

scientific article published in 2023

Ancient Gondwana break-up explains the distribution of the mycoheterotrophic family Corsiaceae (Liliales)

Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?

scientific article published on May 2009

Between two fern genomes

scientific article

Bryophyte-specific primers for retrieving plastid genes suitable for phylogenetic inference.

scientific article

Challenging the paradigms of leaf evolution: Class III HD-Zips in ferns and lycophytes

scientific article published on 7 July 2016

Characterization of the adenosine deaminase-related growth factor (ADGF) gene family in Drosophila.

scientific article published in December 2001

Choosing and using a plant DNA barcode

scientific article

Comprehensive cross-genome survey and phylogeny of glycoside hydrolase family 16 members reveals the evolutionary origin of EG16 and XTH proteins in plant lineages

article

Contrasting patterns of support among plastid genes and genomes for major clades of the monocotyledons

article

Cryptic species in an ancient flowering‐plant lineage (Hydatellaceae, Nymphaeales) revealed by molecular and micromorphological data

article

Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny.

scientific article

Discordant Phylogenomic Placement of Hydnoraceae and Lactoridaceae Within Piperales Using Data From All Three Genomes

scientific article published on 12 April 2021

Discriminating plant species in a local temperate flora using the rbcL+matK DNA barcode

article

Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology

scientific article

Does complete plastid genome sequencing improve species discrimination and phylogenetic resolution in Araucaria?

scientific article published on 22 January 2015

Early genome duplications in conifers and other seed plants

scientific article

Evolution of Geosiris (Iridaceae): historical biogeography and plastid-genome evolution in a genus of non-photosynthetic tropical rainforest herbs disjunct across the Indian Ocean

scientific article

Evolution of strigolactone receptors by gradual neo-functionalization of KAI2 paralogues ⬇️

scientific article published on 29 June 2017

Evolutionary significance of an unusual chloroplast DNA inversion found in two basal angiosperm lineages

scientific article published in March 2000

Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants

scientific article

Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics

scientific article

Genomic Rearrangements and Sequence Evolution across Brown Algal Organelles

scientific article published in 2021

Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns

scientific article (publication date: 6 May 2014)

How well do we understand the overall backbone of cycad phylogeny? New insights from a large, multigene plastid data set.

scientific article

Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree

scientific article

Incomplete lineage sorting and local extinction shaped the complex evolutionary history of the Paleogene relict conifer genus, Chamaecyparis (Cupressaceae)

scientific article published in April 2022

Inference of higher-order conifer relationships from a multi-locus plastid data setThis paper is one of a selection of papers published in the Special Issue on Systematics Research

article

Inference of higher-order relationships in the cycads from a large chloroplast data set.

scientific article

Inference of phylogenetic relationships among the subfamilies of grasses (Poaceae: Poales) using meso-scale exemplar-based sampling of the plastid genome

scholarly article by Jeffery M. Saarela & Sean W. Graham published January 2010 in Botany

Inferring the higher-order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set.

scientific article

Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes.

scientific article

Introduction to the Darwin special issue: The abominable mystery1

scientific article published on 01 January 2009

Introduction to “Plant systematics at the species level” / Introduction pour « La systématique des plantes au niveau de l’espèce »

article

Introduction to “The state of plant systematics research” / Introduction pour « L’état de la systématique des plantes »

article

Localized Retroprocessing as a Model of Intron Loss in the Plant Mitochondrial Genome

scientific article

Macroevolutionary dynamics in the transition of angiosperms to aquatic environments

scientific article published in 2022

Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants

scientific article published on 10 October 2016

Mitochondrial genome evolution in Alismatales: Size reduction and extensive loss of ribosomal protein genes

scientific article

Mitochondrial genomic data are effective at placing mycoheterotrophic lineages in plant phylogeny

scientific article published in 2022

Molecular Phylogenetics of Bromus (Poaceae: Pooideae) Based on Chloroplast and Nuclear DNA Sequence Data

scholarly article by Jeffery M. Saarela et al published 2007 in Aliso

Molecular phylogenetics of Hydatellaceae (Nymphaeales): sexual-system homoplasy and a new sectional classification.

scientific article published on 2 April 2012

Monocot fossils suitable for molecular dating analyses

article

Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots

scientific article published in 2018

Morphological and phylogenetic relationships of the threatened geophyte Wurmbea novae-zelandiae (Colchicaceae) from New Zealand, with notes on typification

article

Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well

scientific article

Mycoheterotrophic Epirixanthes (Polygalaceae) has a typical angiosperm mitogenome but unorthodox plastid genomes

scientific article published on 01 November 2019

Organellomic data sets confirm a cryptic consensus on (unrooted) land-plant relationships and provide new insights into bryophyte molecular evolution

scientific article published on 08 December 2019

Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor

scientific article published on 27 September 2014

Parallel Loss of a Slowly Evolving Intron from Two Closely Related Families in Asparagales

scientific article published in 2004

Paralogous radiations of PIN proteins with multiple origins of noncanonical PIN structure

scientific article

Phylogenetic congruence and discordance among one morphological and three molecular data sets from Pontederiaceae.

scientific article

Phylogenetic reconstruction of the evolution of stylar polymorphisms in Narcissus (Amaryllidaceae).

scientific article

Phylogenetic relationships in the monocot order Commelinales, with a focus on PhilydraceaeThis paper is one of a selection of papers published in the Special Issue on Systematics Research

article

Phylogenomic inference in extremis: A case study with mycoheterotroph plastomes

scientific article published on 01 March 2018

Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica

article

Phylogenomics and plastome evolution of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii

scientific article published in 2022

Phylogeny of the Alismatales (Monocotyledons) and the relationship ofAcorus(Acorales?)

scholarly article by Gitte Petersen et al published 16 April 2015 in Cladistics

Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages

scientific article published in 2023

Phytochrome diversity in green plants and the origin of canonical plant phytochromes

scientific article published on 28 July 2015

Planning the future of plant systematics: Report on a special colloquium at the Royal Netherlands Academy of Arts and Sciences

scientific article published on 05 December 2016

Plastid phylogenomics and molecular evolution of Alismatales

scientific article published in 2015

Plastid phylogenomics and molecular evolution of Thismiaceae (Dioscoreales)

scientific article published in 2023

Plastomes on the edge: the evolutionary breakdown of mycoheterotroph plastid genomes

scientific article

Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.

scientific article published in June 2011

Reconstructing the age and historical biogeography of the ancient flowering-plant family Hydatellaceae (Nymphaeales)

scientific article (publication date: 13 May 2014)

Reconstruction of the Evolution of Reproductive Characters in Pontederiaceae using Phylogenetic Evidence from Chloroplast DNA Restriction-Site Variation

scientific article published on August 1996

Repeated evolution of net venation and fleshy fruits among monocots in shaded habitats confirms a priori predictions: evidence from an ndhF phylogeny

scientific article

Rooting phylogenetic trees with distant outgroups: a case study from the commelinoid monocots

scientific article

Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants

scientific article published on 18 December 2019

Spatial patterns of plant diversity below-ground as revealed by DNA barcoding

scientific article

The Evolution of HD2 Proteins in Green Plants.

scientific article

The Highly Reduced Plastome of Mycoheterotrophic Sciaphila (Triuridaceae) Is Colinear with Its Green Relatives and Is under Strong Purifying Selection.

scientific article

The P. patens chromosome-scale assembly reveals moss genome structure and evolution. ⬇️

scientific article

The Unique Role of the ECERIFERUM2-LIKE Clade of the BAHD Acyltransferase Superfamily in Cuticular Wax Metabolism

scientific article

The evolutionary history of ferns inferred from 25 low-copy nuclear genes

scientific article

The imbalanced supertree of flowering-plant phylogeny

scientific article

The origin and evolution of phototropins

scientific article published on 12 August 2015

Towards a phylogenetic nomenclature of Tracheophyta ⬇️

scientific article (publication date: August 2007)

Transcriptome-derived evidence supports recent polyploidization and a major phylogeographic division in Trithuria submersa (Hydatellaceae, Nymphaeales).

scientific article published on 27 November 2015

Transcriptome-mining for single-copy nuclear markers in ferns

scientific article

Understanding the spectacular failure of DNA barcoding in willows (Salix): does this result from a trans-specific selective sweep?

scientific article published on 15 July 2014

Using herbarium-derived DNAs to assemble a large-scale DNA barcode library for the vascular plants of Canada.

scientific article published on 22 December 2017

Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms

scientific article published on 01 November 2000

Utility of a large, multigene plastid data set in inferring higher-order relationships in ferns and relatives (monilophytes)

scientific article (publication date: 26 August 2010)

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