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List of works by Karl R. Clauser

A face in the crowd: recognizing peptides through database search

scientific article published on 29 August 2011

A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease.

scientific article

Addendum: A breast cancer stem cell niche supported by juxtacrine signalling from monocytes and macrophages

scientific article published on 01 December 2015

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.

scientific article

An Integrative Framework Reveals Signaling-to-Transcription Events in Toll-like Receptor Signaling

scientific article

Antibodies to biotin enable large-scale detection of biotinylation sites on proteins

scientific article published on 16 October 2017

Bead-based profiling of tyrosine kinase phosphorylation identifies SRC as a potential target for glioblastoma therapy

scientific article

Cdk5 is required for memory function and hippocampal plasticity via the cAMP signaling pathway.

scientific article published on 30 September 2011

Clawing through evolution: toxin diversification and convergence in the ancient lineage Chilopoda (centipedes)

scientific article

Comparative Analysis of Mitochondrial N-Termini from Mouse, Human, and Yeast.

scientific article published on 25 January 2017

Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.

scientific article published on 25 April 2017

De novo peptide sequencing via manual interpretation of MS/MS spectra

scientific article published on 01 May 2002

Evaluation of advanced precursor determination for tandem mass tag (TMT)-based quantitative proteomics across instrument platforms

article

Extracellular matrix signatures of human mammary carcinoma identify novel metastasis promoters

scientific article published on 11 March 2014

Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.

scientific article

Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals.

scientific article published on April 2016

Identification of constitutive and gamma-interferon- and interleukin 4-regulated proteins in the human renal carcinoma cell line ACHN.

scientific article published on March 1997

Integrated proteomic analysis of post-translational modifications by serial enrichment.

scientific article published on 09 June 2013

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

scientific article

Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels

scientific article

Mass spectrometry-based proteomics reveals potential roles of NEK9 and MAP2K4 in resistance to PI3K inhibitors in triple negative breast cancers.

scientific article published on 22 February 2018

MatrisomeDB: the ECM-protein knowledge database

scientific article published on 01 January 2020

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. ⬇️

scientific article

Methods, Tools and Current Perspectives in Proteogenomics

scientific article published on 29 April 2017

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins

scientific article

Modification site localization scoring: strategies and performance

scientific article

Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury.

scientific article

Plk1 self-organization and priming phosphorylation of HsCYK-4 at the spindle midzone regulate the onset of division in human cells

scientific article

Proteogenomic integration reveals therapeutic targets in breast cancer xenografts

scientific article published on 28 March 2017

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

scientific article published on 31 October 2013

Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells

scientific article published on 04 September 2019

Proteomic characterization of human multiple myeloma bone marrow extracellular matrix.

scientific article published on 27 March 2017

Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate.

scientific article published on 19 April 2007

Proteomics Standards Initiative Extended FASTA Format

scientific article published on 23 May 2019

Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups

scientific article published on 01 September 2018

Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression.

scientific article published on 10 January 2017

Quantitative, multiplexed workflow for deep analysis of human blood plasma and biomarker discovery by mass spectrometry.

scientific article published on 27 July 2017

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

scientific article published on 14 December 2015

Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry

scientific article published on 01 July 2018

Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

scientific article

SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs

scientific article published on 02 October 2020

Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides

scientific article published in November 1996

Sequencing-Grade De novo Analysis of MS/MS Triplets (CID/HCD/ETD) From Overlapping Peptides ⬇️

scientific article published on May 30, 2013

Shotgun Protein Sequencing with Meta-contig Assembly ⬇️

scientific article published on July 13, 2012

Shotgun protein sequencing: assembly of peptide tandem mass spectra from mixtures of modified proteins.

scientific article published on 19 April 2007

Site-specific identification and quantitation of endogenous SUMO modifications under native conditions.

scientific article published on 27 October 2017

Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells

scientific article published on 21 February 2019

Systematic discovery of TLR signaling components delineates viral-sensing circuits

scientific article

TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach

scientific article published on 09 April 2019

The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices

scientific article published on 9 December 2011

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

scientific article

Use of mass spectrometry to identify protein biomarkers of disease severity in the synovial fluid and serum of patients with rheumatoid arthritis

scientific article published on 01 December 2004

Valosin-containing protein phosphorylation at Ser784 in response to DNA damage

scientific article

iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass Spectra

iPRG 2012 Study: Detecting Modified Peptides in a Complex Mixture

iPRG 2012 Study: Detecting Modified Peptides in a Complex Mixture.

scientific article published in January 2012

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