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List of works by W. Hayes McDonald

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

scientific article

A unique covalent bond in basement membrane is a primordial innovation for tissue evolution.

scientific article published on 16 December 2013

Alteration of the Helicobacter pylori membrane proteome in response to changes in environmental salt concentration.

scientific article

Analysis of surface-exposed outer membrane proteins in Helicobacter pylori.

scientific article

Antagonistic roles for the ubiquitin ligase Asr1 and the ubiquitin-specific protease Ubp3 in subtelomeric gene silencing

scientific article published on 19 January 2016

Assigning function to yeast proteins by integration of technologies.

scientific article

Automatic quality assessment of peptide tandem mass spectra.

scientific article published in August 2004

Binding of the Covalent Flavin Assembly Factor to the Flavoprotein Subunit of Complex II.

scientific article published on 7 December 2015

Characterization of the MDSC proteome associated with metastatic murine mammary tumors using label-free mass spectrometry and shotgun proteomics

scientific article

Charting the protein complexome in yeast by mass spectrometry.

scientific article

Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA.

scientific article

Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress.

scientific article

Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback.

scientific article

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

scientific article (publication date: 2002)

Dual-tagging system for the affinity purification of mammalian protein complexes.

scientific article

Dynamics of the peroxisomal import cycle of PpPex20p: ubiquitin-dependent localization and regulation.

scientific article

Geometric Restraint Drives On- and Off-pathway Catalysis by the Escherichia coli Menaquinol:Fumarate Reductase ⬇️

scientific article

Global phosphotyrosine proteomics identifies PKCδ as a marker of responsiveness to Src inhibition in colorectal cancer

scientific article (publication date: 2013)

Glucose autoxidation induces functional damage to proteins via modification of critical arginine residues

scientific article

Growth phase-dependent composition of the Helicobacter pylori exoproteome.

scientific article

Helicobacter pylori exploits a unique repertoire of type IV secretion system components for pilus assembly at the bacteria-host cell interface

scientific article

Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry.

scientific article published on 18 September 2013

Iron Toxicity in the Retina Requires Alu RNA and the NLRP3 Inflammasome

scientific article published on 11 June 2015

LMO2 Oncoprotein Stability in T-Cell Leukemia Requires Direct LDB1 Binding

scientific article

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

scientific article published on January 2004

MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra.

scientific article published in August 2005

Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch.

scientific article published on 05 May 2009

Molecular and Structural Analysis of the Helicobacter pylori cag Type IV Secretion System Core Complex.

scientific article

Mus81-Eme1 are essential components of a Holliday junction resolvase

scientific article (publication date: 16 November 2001)

Myb-related fission yeast cdc5p is a component of a 40S snRNP-containing complex and is essential for pre-mRNA splicing.

scientific article

Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex.

scientific article published on 8 September 2003

Nse1, Nse2, and a novel subunit of the Smc5-Smc6 complex, Nse3, play a crucial role in meiosis.

scientific article published on 25 August 2004

Obesity and altered glucose metabolism impact HDL composition in CETP transgenic mice: a role for ovarian hormones.

scientific article published on 3 January 2012

P-REX1 creates a positive feedback loop to activate growth factor receptor, PI3K/AKT and MEK/ERK signaling in breast cancer.

scientific article

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

scientific article

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

scientific article published in October 2006

Protein disulfide isomerase serves as a molecular chaperone to maintain estrogen receptor alpha structure and function.

scientific article published on 11 May 2006

Proteolysis-independent regulation of the transcription factor Met4 by a single Lys 48-linked ubiquitin chain.

scientific article

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

scientific article published on 31 October 2013

Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome.

scientific article published on 24 June 2003

Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.

scientific article

RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress.

scientific article

Replication checkpoint kinase Cds1 regulates recombinational repair protein Rad60.

scientific article published on August 2003

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

scientific article published in October 2006

Sepp1(UF) forms are N-terminal selenoprotein P truncations that have peroxidase activity when coupled with thioredoxin reductase-1

scientific article published on 14 January 2014

Short forms of Ste20-related proline/alanine-rich kinase (SPAK) in the kidney are created by aspartyl aminopeptidase (Dnpep)-mediated proteolytic cleavage

scientific article

Shotgun proteomics and biomarker discovery.

scientific article

Shotgun proteomics: identification of unique protein profiles of apoptotic bodies from biliary epithelial cells

scientific article

Shotgun proteomics: integrating technologies to answer biological questions.

scientific article

Slx1-Slx4 are subunits of a structure-specific endonuclease that maintains ribosomal DNA in fission yeast.

scientific article

Staphylococcus aureus LukAB cytotoxin kills human neutrophils by targeting the CD11b subunit of the integrin Mac-1.

scientific article published on 10 June 2013

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

scientific article published on 11 August 2007

Swi1 and Swi3 are components of a replication fork protection complex in fission yeast.

scientific article

Tea4p links microtubule plus ends with the formin for3p in the establishment of cell polarity.

scientific article

The Clp1/Cdc14 phosphatase contributes to the robustness of cytokinesis by association with anillin-related Mid1.

scientific article published on 31 March 2008

The Nse5-Nse6 Dimer Mediates DNA Repair Roles of the Smc5-Smc6 Complex.

scientific article published in April 2006

The SBF- and MBF-associated protein Msa1 is required for proper timing of G1-specific transcription in Saccharomyces cerevisiae.

scientific article

The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae.

scientific article

The novel chemical entity YTR107 inhibits recruitment of nucleophosmin to sites of DNA damage, suppressing repair of DNA double-strand breaks and enhancing radiosensitization

scientific article

Use of high specific activity StarFire oligonucleotide probes to visualize low-abundance pre-mRNA splicing intermediates in S. pombe.

scientific article published on October 2000

iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass Spectra

iPRG 2012 Study: Detecting Modified Peptides in a Complex Mixture.

scientific article published in January 2012

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