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List of works by Yuri Lebedev

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Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling

scientific article published on 07 February 2014
Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.

scientific article
tcR: an R package for T cell receptor repertoire advanced data analysis.

scientific article
Human-specific subfamilies of HERV-K (HML-2) long terminal repeats: three master genes were active simultaneously during branching of hominoid lineages.

scientific article
Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing.

scientific article
Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling.

scientific article
Solitary HERV-K LTRs possess bi-directional promoter activity and contain a negative regulatory element in the U5 region

scientific article published on 01 April 2000
Quantitative tracking of T cell clones after haematopoietic stem cell transplantation.

scientific article
Quantitative profiling of immune repertoires for minor lymphocyte counts using unique molecular identifiers.

scientific article published on 08 May 2015
Endogenous retroviruses and human evolution

scientific article published on 01 January 2002
Mother and child T cell receptor repertoires: deep profiling study.

scientific article published on 25 December 2013
A technique for genome-wide identification of differences in the interspersed repeats integrations between closely related genomes and its application to detection of human-specific integrations of HERV-K LTRs.

scientific article
Long terminal repeats of human endogenous retrovirus K family (HERV-K) specifically bind host cell nuclear proteins

scientific article published on 01 January 1998
Subfamilies and nearest-neighbour dendrogram for the LTRs of human endogenous retroviruses HERV-K mapped on human chromosome 19: physical neighbourhood does not correlate with identity level.

scientific article published in January 1998
Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach

scientific article
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

scientific article
Normalization of genomic DNA using duplex-specific nuclease.

scientific article
Contribution of functional KIR3DL1 to ankylosing spondylitis.

scientific article published on 6 September 2010
High polymorphism level of genomic sequences flanking insertion sites of human endogenous retroviral long terminal repeats

scientific article published on 01 January 1999
Large-scale determination of the methylation status of retrotransposons in different tissues using a methylation tags approach.

scientific article published on 18 February 2004
First autologous hematopoietic SCT for ankylosing spondylitis: a case report and clues to understanding the therapy

scientific article published on 12 March 2012
The evidence for increased L1 activity in the site of human adult brain neurogenesis.

scientific article
Method for identification of condition-associated public antigen receptor sequences.

scientific article published on 13 March 2018
Tracking T-cell immune reconstitution after TCRαβ/CD19-depleted hematopoietic cells transplantation in children.

scientific article published on 4 November 2016
Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins

scientific article published on 20 November 2018
A new set of markers for human identification based on 32 polymorphic Alu insertions.

scientific article
Full-sized HERV-K (HML-2) human endogenous retroviral LTR sequences on human chromosome 21: map locations and evolutionary history

scientific article published on 01 July 2001
Individual characterization of stably expanded T cell clones in ankylosing spondylitis patients.

scientific article
Detecting T cell receptors involved in immune responses from single repertoire snapshots

scientific article published on 13 June 2019
High resolution mapping DNAs by R-loop atomic force microscopy

scientific article published on October 15, 1998
Genome-wide experimental identification and functional analysis of human specific retroelements.

scientific article
CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients.

scientific article published on 22 February 2018
Positioning of 72 potentially full size LTRs of human endogenous retroviruses HERV-K on the human chromosome 19 map. Occurrences of the LTRs in human gene sites.

scientific article published in October 1997
Human genome-specific HERV-K intron LTR genes have a random orientation relative to the direction of transcription, and, possibly, participated in antisense gene expression regulation

scientific article published in January 2003
Quantitative profiling reveals minor changes of T cell receptor repertoire in response to subunit inactivated influenza vaccine.

scientific article published on 15 February 2018
Conversion of Differentiation Inducer Resistance to Differentiation Inducer Sensitivity in Erythroleukemia Cells

scientific article published on July 1, 1990
The tissue-specific methylation of human-specific endogenous retroviral long terminal repeats

scientific article published on 01 September 2004
Unusually long target site duplications flanking some of the long terminal repeats of human endogenous retrovirus K in the human genome.

scientific article published in June 2004
A human endogenous retrovirus-like (HERV) LTR formed more than 10 million years ago due to an insertion of HERV-H LTR into the 5' LTR of HERV-K is situated on human chromosomes 10, 19 and Y.

scientific article published in April 1999
Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones

scientific article published on 21 February 2020
The functional analysis of polymorphic insertions of Alu retroelements at acute lymphoblastic leukemia

scientific article published on 01 May 2012
From East to West: patterns of genetic diversity of populations living in four Eurasian regions.

scientific article published on 7 February 2006
An advanced enrichment method for rare somatic retroelement insertions sequencing

scientific article published on 31 October 2018
A novel approach to identification of somatic retroelements' insertions in human genome

scientific article
Retroposons in modern human genome evolution

scientific article published on 01 November 2009
The oligoclonal expansion of T cells: study of its stability over time

scientific article
Reliability of immune receptor rearrangements as genetic markers for minimal residual disease monitoring.

scientific article published on 23 May 2016
Human trash ESTs--sequences from cDNA collection that are not aligned to genome assembly.

scientific article published in August 2008
Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection

scientific article published on 05 January 2021

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