List of works - Norihiro Okada

A SINE-derived element constitutes a unique modular enhancer for mammalian diencephalic Fgf8

scientific article

A mammalian conserved element derived from SINE displays enhancer properties recapitulating Satb2 expression in early-born callosal projection neurons

scientific article

A retroposon analysis of Afrotherian phylogeny

scientific article

Acquisition of endonuclease specificity during evolution of L1 retrotransposon

scientific article published on 30 June 2007

Afrotherian phylogeny as inferred from complete mitochondrial genomes

scientific article

Ancient SINEs from African endemic mammals

scientific article

B chromosomes have a functional effect on female sex determination in Lake Victoria cichlid fishes

scientific article

Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage

scientific article published on 16 May 2006

Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens

scientific article published on 17 June 2020

Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes.

scientific article published on 24 December 2008

Characterization of V1R receptor (ora) genes in Lake Victoria cichlids

scientific article

Characterization of a novel SINE superfamily from invertebrates: "Ceph-SINEs" from the genomes of squids and cuttlefish

scientific article published on 12 November 2009

Chronology of the extant African elephant species and case study of the species identification of the small African elephant with the molecular phylogenetic method

scientific article

Coelacanth genomes reveal signatures for evolutionary transition from water to land

scientific article (publication date: October 2013)

Conserved orthologous vomeronasal type 1 receptor genes among goat, sheep and cow

article

Conserved repertoire of orthologous vomeronasal type 1 receptor genes in ruminant species.

scientific article published on 15 September 2009

Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate

scientific journal article

Data of RNA-seq transcriptomes of liver, bone, heart, kidney and blood in klotho mice at a pre-symptomatic state and the effect of a traditional Japanese multi-herbal medicine, juzentaihoto

publication published on 22 April 2022

Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution.

scientific article

Determining the Position of Storks on the Phylogenetic Tree of Waterbirds by Retroposon Insertion Analysis

scientific article

Emergence of mammals by emergency: exaptation.

scientific article

Erratum to “The status of the Japanese and East Asian bats of the genus Myotis (Vespertilionidae) based on mitochondrial sequences” [Mol. Phylogenet. Evol. 28 (2003) 297–307]

article

Evolution of CHR-2 SINEs in cetartiodactyl genomes: possible evidence for the monophyletic origin of toothed whales

Evolutionary Gain of Dbx1 Expression Drives Subplate Identity in the Cerebral Cortex

scientific article published on 01 October 2019

Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications

article

Extremely slow rate of evolution in the HOX cluster revealed by comparison between Tanzanian and Indonesian coelacanths

scientific article

First application of the SINE (short interspersed repetitive element) method to infer phylogenetic relationships in reptiles: an example from the turtle superfamily Testudinoidea

scientific article published on 10 March 2004

Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria—An analysis based on SINEs and mitochondrial DNA

article

Genetically distinct coelacanth population off the northern Tanzanian coast

scientific article (publication date: November 2011)

Genomic expansion of the Bov-A2 retroposon relating to phylogeny and breed management

Identification of four Engrailed genes in the Japanese lamprey, Lethenteron japonicum

scientific article published in June 2008

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

Intra- and interfamily relationships of Vespertilionidae inferred by various molecular markers including SINE insertion data

scientific article

LINEs mobilize SINEs in the eel through a shared 3' sequence.

scientific article published on November 2002

Lineage-specific expansion of vomeronasal type 2 receptor-like (OlfC) genes in cichlids may contribute to diversification of amino acid detection systems

scientific article

MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals

scientific article published on 12 February 2016

Mitochondrial phylogenetics and evolution of mysticete whales.

scientific article

Mitochondrial phylogeny of hedgehogs and monophyly of Eulipotyphla

scientific article

Molecular evidence from retroposons that whales form a clade within even-toed ungulates.

scientific article

Molecular phylogenetic study on the origin and evolution of Mustelidae

scientific article published on 12 February 2007

Multiple episodic evolution events in V1R receptor genes of East-African cichlids

scientific article

MyrSINEs: A novel SINE family in the anteater genomes

article

New candidate species most closely related to penguins.

scientific article

Newly discovered young CORE-SINEs in marsupial genomes

scientific article published on 12 October 2007

Phylogenetic analysis of diprotodontian marsupials based on complete mitochondrial genomes

scientific article

Phylogeny of galactolipid synthase homologs together with their enzymatic analyses revealed a possible origin and divergence time for photosynthetic membrane biogenesis.

scientific article published on 30 December 2011

Possible involvement of SINEs in mammalian-specific brain formation

scholarly article

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Baleen whale phylogeny and a past extensive radiation event revealed by SINE insertion analysis

scientific article published on 5 December 2005

Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals

scientific article (publication date: 31 March 2009)

Reverse evolution in RH1 for adaptation of cichlids to water depth in Lake Tanganyika.

scientific article

Rooting the eutherian tree: the power and pitfalls of phylogenomics

scientific article (publication date: 2007)

SINEs and LINEs share common 3' sequences: a review.

scientific article published on December 1997

Speciation through sensory drive in cichlid fish.

scientific article

The complete mitochondrial genomes of deep-sea squid (Bathyteuthis abyssicola), bob-tail squid (Semirossia patagonica) and four giant cuttlefish (Sepia apama, S. latimanus, S. lycidas and S. pharaonis), and their application to the phylogenetic anal

scientific article published on 26 June 2013

The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis.

scientific article published on 14 December 2008

The genomic substrate for adaptive radiation in African cichlid fish

scientific article

The rise and fall of the CR1 subfamily in the lineage leading to penguins

scientific article published on 20 December 2005

The status of the Japanese and East Asian bats of the genus Myotis (Vespertilionidae) based on mitochondrial sequences

article

Toothed whale monophyly reassessed by SINE insertion analysis: the absence of lineage sorting effects suggests a small population of a common ancestral species

scientific article published on 17 August 2006

Unique Mammalian tRNA-Derived Repetitive Elements in Dermopterans: The t-SINE Family and Its Retrotransposition Through Multiple Sources

scientific article published on 28 July 2003

Vertebrate rhodopsin adaptation to dim light via rapid meta-II intermediate formation

scientific article published on 25 October 2009

magp4 gene may contribute to the diversification of cichlid morphs and their speciation

scientific article published on 6 March 2006

List of works by Norihiro Okada

A SINE-derived element constitutes a unique modular enhancer for mammalian diencephalic Fgf8

A mammalian conserved element derived from SINE displays enhancer properties recapitulating Satb2 expression in early-born callosal projection neurons

A retroposon analysis of Afrotherian phylogeny

Acquisition of endonuclease specificity during evolution of L1 retrotransposon

Afrotherian phylogeny as inferred from complete mitochondrial genomes

Ancient SINEs from African endemic mammals

B chromosomes have a functional effect on female sex determination in Lake Victoria cichlid fishes

Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage

Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens

Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes.

Characterization of V1R receptor (ora) genes in Lake Victoria cichlids

Characterization of a novel SINE superfamily from invertebrates: "Ceph-SINEs" from the genomes of squids and cuttlefish

Chronology of the extant African elephant species and case study of the species identification of the small African elephant with the molecular phylogenetic method

Coelacanth genomes reveal signatures for evolutionary transition from water to land

Conserved orthologous vomeronasal type 1 receptor genes among goat, sheep and cow

Conserved repertoire of orthologous vomeronasal type 1 receptor genes in ruminant species.

Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate

Data of RNA-seq transcriptomes of liver, bone, heart, kidney and blood in klotho mice at a pre-symptomatic state and the effect of a traditional Japanese multi-herbal medicine, juzentaihoto

Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution.

Determining the Position of Storks on the Phylogenetic Tree of Waterbirds by Retroposon Insertion Analysis

Emergence of mammals by emergency: exaptation.

Erratum to “The status of the Japanese and East Asian bats of the genus Myotis (Vespertilionidae) based on mitochondrial sequences” [Mol. Phylogenet. Evol. 28 (2003) 297–307]

Evolution of CHR-2 SINEs in cetartiodactyl genomes: possible evidence for the monophyletic origin of toothed whales

Evolutionary Gain of Dbx1 Expression Drives Subplate Identity in the Cerebral Cortex

Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications

Extremely slow rate of evolution in the HOX cluster revealed by comparison between Tanzanian and Indonesian coelacanths

First application of the SINE (short interspersed repetitive element) method to infer phylogenetic relationships in reptiles: an example from the turtle superfamily Testudinoidea

Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria—An analysis based on SINEs and mitochondrial DNA

Genetically distinct coelacanth population off the northern Tanzanian coast

Genomic expansion of the Bov-A2 retroposon relating to phylogeny and breed management

Identification of four Engrailed genes in the Japanese lamprey, Lethenteron japonicum

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

Intra- and interfamily relationships of Vespertilionidae inferred by various molecular markers including SINE insertion data

LINEs mobilize SINEs in the eel through a shared 3' sequence.

Lineage-specific expansion of vomeronasal type 2 receptor-like (OlfC) genes in cichlids may contribute to diversification of amino acid detection systems

MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals

Mitochondrial phylogenetics and evolution of mysticete whales.

Mitochondrial phylogeny of hedgehogs and monophyly of Eulipotyphla

Molecular evidence from retroposons that whales form a clade within even-toed ungulates.

Molecular phylogenetic study on the origin and evolution of Mustelidae

Multiple episodic evolution events in V1R receptor genes of East-African cichlids

MyrSINEs: A novel SINE family in the anteater genomes

New candidate species most closely related to penguins.

Newly discovered young CORE-SINEs in marsupial genomes

Phylogenetic analysis of diprotodontian marsupials based on complete mitochondrial genomes

Phylogeny of galactolipid synthase homologs together with their enzymatic analyses revealed a possible origin and divergence time for photosynthetic membrane biogenesis.

Possible involvement of SINEs in mammalian-specific brain formation

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Baleen whale phylogeny and a past extensive radiation event revealed by SINE insertion analysis

Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals

Reverse evolution in RH1 for adaptation of cichlids to water depth in Lake Tanganyika.

Rooting the eutherian tree: the power and pitfalls of phylogenomics

SINEs and LINEs share common 3' sequences: a review.

Speciation through sensory drive in cichlid fish.

The complete mitochondrial genomes of deep-sea squid (Bathyteuthis abyssicola), bob-tail squid (Semirossia patagonica) and four giant cuttlefish (Sepia apama, S. latimanus, S. lycidas and S. pharaonis), and their application to the phylogenetic anal

The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis.

The genomic substrate for adaptive radiation in African cichlid fish

The rise and fall of the CR1 subfamily in the lineage leading to penguins

The status of the Japanese and East Asian bats of the genus Myotis (Vespertilionidae) based on mitochondrial sequences

Toothed whale monophyly reassessed by SINE insertion analysis: the absence of lineage sorting effects suggests a small population of a common ancestral species

Unique Mammalian tRNA-Derived Repetitive Elements in Dermopterans: The t-SINE Family and Its Retrotransposition Through Multiple Sources

Vertebrate rhodopsin adaptation to dim light via rapid meta-II intermediate formation

magp4 gene may contribute to the diversification of cichlid morphs and their speciation

Éléments mobiles SINE en phylogénie