Search filters

List of works by Pierre Tuffery

A Computational Methodology to Overcome the Challenges Associated With the Search for Specific Enzyme Targets to Develop Drugs Against Leishmania major.

scientific article

A Free Web-Based Protocol to Assist Structure-Based Virtual Screening Experiments

scientific article published on 19 September 2019

A Functional Role for the Monomethylated Gln-51 and Lys-53 Residues of the 49GGQTK53 Motif of eL42 from Human 80S Ribosomes.

scientific article published on 31 March 2017

A Generalized Attraction–Repulsion Potential and Revisited Fragment Library Improves PEP-FOLD Peptide Structure Prediction

scientific article published on 17 March 2022

A coarse-grained protein force field for folding and structure prediction.

scientific article published in November 2007

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)

scientific article published on 22 April 2020

A critical assessment of hidden markov model sub-optimal sampling strategies applied to the generation of peptide 3D models.

scientific article published on 18 June 2016

Accessing external innovation in drug discovery and development.

scientific article published on 24 April 2015

BCSearch: fast structural fragment mining over large collections of protein structures.

scientific article

BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes

scientific article published on 6 November 2014

BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes.

scientific article published on 4 December 2014

CS-PSeq-Gen: simulating the evolution of protein sequence under constraints.

scientific article published in July 2002

Cloning and modeling of CD8 beta in the amphibian ambystoma Mexicanum. Evolutionary conserved structures for interactions with major histocompatibility complex (MHC) class I molecules.

scientific article

Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.

scientific article published in November 2003

DaReUS-Loop: a web server to model multiple loops in homology models

scientific article published on 01 July 2019

DaReUS-Loop: accurate loop modeling using fragments from remote or unrelated proteins

scientific article published in Scientific Reports

De novo peptide structure prediction: an overview

scientific article published on 01 January 2015

Dependency between consecutive local conformations helps assemble protein structures from secondary structures using Go potential and greedy algorithm.

scientific article

Detecting protein candidate fragments using a structural alphabet profile comparison approach.

scientific article

Enhanced protein fold recognition using a structural alphabet.

scientific article

Exploring an alignment free approach for protein classification and structural class prediction.

scientific article published on 19 November 2007

FAF-Drugs: free ADME/tox filtering of compound collections.

scientific article published on July 2006

Fast protein fragment similarity scoring using a Binet-Cauchy kernel.

scientific article

Flexibility and binding affinity in protein-ligand, protein-protein and multi-component protein interactions: limitations of current computational approaches.

scientific article

Forme: An interactive package for protein backbone deformation ⬇️

scientific article published on 01 September 1991

Fpocket: an open source platform for ligand pocket detection.

scientific article

Frog2: Efficient 3D conformation ensemble generator for small compounds. ⬇️

scientific article

Frog: a FRee Online druG 3D conformation generator.

scientific article published on 7 May 2007

HHalign-Kbest: exploring sub-optimal alignments for remote homology comparative modeling.

scientific article published on 30 July 2015

Hidden Markov model approach for identifying the modular framework of the protein backbone.

scientific article

Hidden Markov model-derived structural alphabet for proteins: the learning of protein local shapes captures sequence specificity.

scientific article

Improved PEP-FOLD Approach for Peptide and Miniprotein Structure Prediction.

scientific article

In silico characterization of the interaction between LSKL peptide, a LAP-TGF-beta derived peptide, and ADAMTS1

scientific article published on 31 January 2016

In silico structural characterization of protein targets for drug development against Trypanosoma cruzi

scientific article published on 24 September 2016

InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs.

scientific article published in July 2018

InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information

scientific article published on 29 April 2016

Lys53 of ribosomal protein L36AL and the CCA end of a tRNA at the P/E hybrid site are in close proximity on the human ribosome.

scientific article

MTiOpenScreen: a web server for structure-based virtual screening.

scientific article published on 8 April 2015

Missense mutations in SLC26A8, encoding a sperm-specific activator of CFTR, are associated with human asthenozoospermia

scientific article published on 11 April 2013

Online structure-based screening of purchasable approved drugs and natural compounds: retrospective examples of drug repositioning on cancer targets

scientific article published on 17 August 2018

PCE: web tools to compute protein continuum electrostatics

scientific article

PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex

scientific article published on 29 April 2016

PEP-FOLD: an online resource for de novo peptide structure prediction.

scientific article published on 11 May 2009

PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.

scientific article

PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces

scientific article published on 6 May 2014

PatchSearch: a web server for off-target protein identification

scientific article published on 01 July 2019

Peptide Suboptimal Conformation Sampling for the Prediction of Protein-Peptide Interactions

scientific article published in January 2017

PredAcc: prediction of solvent accessibility

scientific article published on 01 February 1999

Prediction of protein side chain conformations: a study on the influence of backbone accuracy on conformation stability in the rotamer space.

scientific article published on April 1997

Prediction of the positioning of the seven transmembrane alpha-helices of bacteriorhodopsin. A molecular simulation study

scientific article published on 01 March 1994

Probing the quality control mechanism of the Escherichia coli twin-arginine translocase with folding variants of a de novo-designed heme protein.

scientific article published on 20 March 2018

Progress with peptide scanning to study structure-activity relationships: the implications for drug discovery

scientific article published on 16 June 2016

Protease profiling of liver fibrosis reveals the ADAM metallopeptidase with thrombospondin type 1 motif, 1 as a central activator of transforming growth factor beta

scientific article published on 01 December 2011

Proteo3Dnet: a web server for the integration of structural information with interactomics data

scientific article published on 01 July 2021

RPBS: a web resource for structural bioinformatics

scientific article

SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace.

scientific article published on July 2006

SCit: web tools for protein side chain conformation analysis

scientific article

The CCA-end of P-tRNA Contacts Both the Human RPL36AL and the A-site Bound Translation Termination Factor eRF1 at the Peptidyl Transferase Center of the Human 80S Ribosome.

scientific article published on 11 July 2014

The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems

scientific article published on 23 April 2014

XmMol: an X11 and motif program for macromolecular visualization and modeling

scientific article published on 01 February 1995

fpocket: online tools for protein ensemble pocket detection and tracking.

scientific article published on 16 May 2010

wwLigCSRre: a 3D ligand-based server for hit identification and optimization

scientific article (publication date: July 2009)

Paulina is supported by:

About Paulina

Help