Search filters

List of works by Youping Deng

3D protein structure prediction with genetic tabu search algorithm

scientific article

A Fourier transformation based method to mine peptide space for antimicrobial activity

scientific article published on 26 September 2006

A comparative study of different machine learning methods on microarray gene expression data

scientific article

A hidden Markov model-based algorithm for identifying tumour subtype using array CGH data ⬇️

scientific article published on December 23, 2011

A hybrid machine learning-based method for classifying the Cushing's Syndrome with comorbid adrenocortical lesions

scientific article

A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2,4DNT ⬇️

scientific article published on December 1, 2010

A novel gene network inference algorithm using predictive minimum description length approach

scientific article

A robust detail preserving anisotropic diffusion for speckle reduction in ultrasound images ⬇️

scientific article published on December 23, 2011

A transcriptional dynamic network during Arabidopsis thaliana pollen development ⬇️

scientific article published on December 23, 2011

Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms

scientific article

An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments

An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data

scientific article

An improved approach for the segmentation of starch granules in microscopic images ⬇️

scientific article published on November 2, 2010

Analysis and functional annotation of expressed sequence tags from the fall armyworm Spodoptera frugiperda

scientific article

Analysis of Common and Specific Mechanisms of Liver Function Affected by Nitrotoluene Compounds ⬇️

scientific article published on February 8, 2011

Analyzing adjuvant radiotherapy suggests a non monotonic radio-sensitivity over tumor volumes

scientific article

Assessment of gene order computing methods for Alzheimer's disease

scientific article

Association of six CpG-SNPs in the inflammation-related genes with coronary heart disease

scientific article published on 25 July 2016

Batch Blast Extractor: an automated blastx parser application

scientific article

CPNE1 silencing inhibits the proliferation, invasion and migration of human osteosarcoma cells.

scientific article published on 4 December 2017

Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida

scientific article

Commonality and differences of methylation signatures in the plasma of patients with pancreatic cancer and colorectal cancer

scientific article

Comparison of feature selection and classification for MALDI-MS data

scientific article

Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks

scientific article

Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2

scientific article

Development of a novel DNA sequencing method not only for hepatitis B virus genotyping but also for drug resistant mutation detection ⬇️

scientific article published on January 23, 2013

Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB06).

scientific article published on 12 December 2006

Development of somatic mutation signatures for risk stratification and prognosis in lung and colorectal adenocarcinomas

article published in 2019

Evaluation of Plasma miR-21 and miR-152 as Diagnostic Biomarkers for Common Types of Human Cancers

scientific article published on 5 February 2016

Exploring virus relationships based on virus-host protein-protein interaction network ⬇️

scientific article published on December 23, 2011

Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer Regions of Nuclear Ribosomal DNA ⬇️

scientific article published on August 30, 2012

Feature selection and classification of MAQC-II breast cancer and multiple myeloma microarray gene expression data

scientific article

From genes to networks: in systematic points of view ⬇️

scientific article published on December 23, 2011

From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite

scientific article (publication date: 7 July 2010)

Gene regulation mediated by microRNAs in response to green tea polyphenol EGCG in mouse lung cancer

scientific article

Gene selection and classification for cancer microarray data based on machine learning and similarity measures ⬇️

scientific article published on December 23, 2011

GeneVenn - A web application for comparing gene lists using Venn diagrams

scientific article published on 10 April 2007

Genomic signatures and gene networking: challenges and promises ⬇️

scientific article published on December 23, 2011

Genomics, molecular imaging, bioinformatics, and bio-nano-info integration are synergistic components of translational medicine and personalized healthcare research

scientific article

Global lipidomics identified plasma lipids as novel biomarkers for early detection of lung cancer

scientific article published on 11 November 2017

Global lipidomics reveals two plasma lipids as novel biomarkers for the detection of squamous cell lung cancer: A pilot study.

scientific article published on 18 May 2018

Global protein interactome exploration through mining genome-scale data in Arabidopsis thaliana ⬇️

scientific article published on November 2, 2010

ILOOP--a web application for two-channel microarray interwoven loop design

scientific article

Identification of biomarkers that distinguish chemical contaminants based on gene expression profiles

scientific article

Identification of genes and pathways involved in kidney renal clear cell carcinoma

scientific article

Identification of new members of hydrophobin family using primary structure analysis

scientific article published on 12 December 2006

Identification of plasma lipid biomarkers for prostate cancer by lipidomics and bioinformatics

scientific article

In vitro gene regulatory networks predict in vivo function of liver ⬇️

scientific article published on November 12, 2010

Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer

scholarly article by Mengjie Guo published in December 2018

Integrated lipidomics and transcriptomic analysis of peripheral blood reveals significantly enriched pathways in type 2 diabetes mellitus ⬇️

scientific article published on January 23, 2013

Integrative microRNA and gene profiling data analysis reveals novel biomarkers and mechanisms for lung cancer

scientific article

Investigation of transmembrane proteins using a computational approach

scientific article

Mass segmentation using a combined method for cancer detection ⬇️

scientific article published on December 23, 2011

Maximizing biomarker discovery by minimizing gene signatures ⬇️

scientific article published on December 23, 2011

Maximum predictive power of the microarray-based models for clinical outcomes is limited by correlation between endpoint and gene expression profile ⬇️

scientific article published on December 23, 2011

MicroRNA and messenger RNA profiling reveals new biomarkers and mechanisms for RDX induced neurotoxicity

scientific article

Neurotoxicogenomic investigations to assess mechanisms of action of the munitions constituents RDX and 2,6-DNT in Northern bobwhite (Colinus virginianus).

scientific article published on 5 May 2009

Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data

scientific article

Nucleosome structure incorporated histone acetylation site prediction in arabidopsis thaliana ⬇️

scientific article published on November 2, 2010

Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data

scientific article published on 12 December 2006

Plasma MicroRNA Pair Panels as Novel Biomarkers for Detection of Early Stage Breast Cancer

scientific article published on 01 January 2018

Plasma lipidomics profiling identified lipid biomarkers in distinguishing early-stage breast cancer from benign lesions

scientific article published on 02 May 2016

Plasma small ncRNA pair panels as novel biomarkers for early-stage lung adenocarcinoma screening

Predictive Minimum Description Length Principle Approach to Inferring Gene Regulatory Networks ⬇️

scientific article published on January 1, 2011

Promoting synergistic research and education in genomics and bioinformatics.

scientific article

RNA-Seq and Network Analysis Revealed Interacting Pathways in TGF-β-Treated Lung Cancer Cell Lines

scientific article published on January 2014

Reconstruct gene regulatory network using slice pattern model

scientific article

RiboaptDB: a comprehensive database of ribozymes and aptamers

scientific article published on 6 September 2006

SVM Classifier - a comprehensive java interface for support vector machine classification of microarray data

scientific article published on 12 December 2006

Speckle reducing bilateral filter for cattle follicle segmentation

scientific article

State Space Model with hidden variables for reconstruction of gene regulatory networks ⬇️

scientific article published on December 23, 2011

Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition

scientific article

The Evaluation of Serum Biomarkers for Non-small Cell Lung Cancer (NSCLC) Diagnosis

scientific article published on 29 November 2018

The clinical significance of snail protein expression in gastric cancer: a meta-analysis

scientific article published on 25 July 2016

The current trend of genomics research for human diseases ⬇️

scientific article published on January 23, 2013

The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25-35 triggered in SH-SY5Y cell

scholarly article by Ling Hu published in December 2018

Toxicogenomic analysis provides new insights into molecular mechanisms of the sublethal toxicity of 2,4,6-trinitrotoluene in Eisenia fetida

scientific article

Transcriptome profiling of Saccharomyces cerevisiae mutants lacking C2H2 zinc finger proteins

scientific article

Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida

scientific article

Transcriptomic profiles of peripheral white blood cells in type II diabetes and racial differences in expression profiles

scientific article

Paulina is supported by:

About Paulina

Help