List of works - Peter J. Bickel

A model for sequential evolution of ligands by exponential enrichment (SELEX) data

article

A nonparametric view of network models and Newman-Girvan and other modularities

scientific article

An assumption-free exact test for fixed-design linear models with exchangeable errors

scientific article published in 2020

An overview of recent developments in genomics and associated statistical methods

scientific article

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

scientific article published in June 2007

Asymptotic normality of maximum likelihood and its variational approximation for stochastic blockmodels ⬇️

scholarly article from 'The Annals of Statistics' published in 2013

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

scientific article

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

scientific article

Comparative analysis of regulatory information and circuits across distant species

scientific article

Comparative analysis of the transcriptome across distant species

scientific article

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

scientific article

Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data

scientific article

DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila

scientific article published on 10 December 2012

David Blackwell, 1919-2010: An explorer in mathematics and statistics

scientific article published on 13 November 2020

Detecting DNA regulatory motifs by incorporating positional trends in information content

scientific article

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

scientific article published on 23 July 2009

Diversity and dynamics of the Drosophila transcriptome

scientific article

Edgeworth Expansions in Nonparametric Statistics

scientific article published in 1974

Estimating motifs under order restrictions

scientific article published on 10 January 2005

Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy

article published in the Proceedings of the National Academy of Sciences of the United States of America

Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila

scientific article

Finding important sites in protein sequences

scientific article

GeneFishing to reconstruct context specific portraits of biological processes

scientific article published on 04 September 2019

Genome-guided transcript assembly by integrative analysis of RNA sequence data.

scientific article

Genome-wide analysis of promoter architecture in Drosophila melanogaster.

scientific article

Hypothesis testing for automated community detection in networks ⬇️

scholarly article from 'Journal of the Royal Statistical Society: Series B (Statistical Methodology)' published in 2016

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Likelihood-based model selection for stochastic block models ⬇️

scholarly article from 'The Annals of Statistics' published in 2017

Long noncoding RNAs are rarely translated in two human cell lines

scientific article

Maximum Likelihood Estimation of Intrinsic Dimension ⬇️

scientific article published in January 2005

Measuring reproducibility of high-throughput experiments

scientific article published on 13 October 2011

Metalearners for estimating heterogeneous treatment effects using machine learning

article

NETWORK MODELLING OF TOPOLOGICAL DOMAINS USING HI-C DATA

scientific article published on 01 September 2019

Navigating and mining modENCODE data

scientific article

Nonparametric Variable Selection and Modeling for Spatial and Temporal Regulatory Networks

scientific article published on January 1, 2012

Nonparametric identification of regulatory interactions from spatial and temporal gene expression data

scientific article

On Some Alternative Estimates for Shift in the p-Variate One Sample Problem

scientific article published in 1964

On Some Robust Estimates of Location

scientific article published in 1965

On maximizing item information and matching difficulty with ability

On robust regression with high-dimensional predictors

scientific article published on 16 August 2013

Optimal M-estimation in high-dimensional regression

scientific article published on 16 August 2013

Parametric Robustness: Small Biases can be Worthwhile

scientific article published in 1984

Projection pursuit in high dimensions

scientific article published on 27 August 2018

Pseudo-likelihood methods for community detection in large sparse networks ⬇️

scholarly article from 'The Annals of Statistics' published in 2013

Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study

scholarly article

Regularized estimation of large covariance matrices

scientific article published in 2008

Simultaneous analysis of Lasso and Dantzig selector

scientific article published in 2009

Some Asymptotic Theory for the Bootstrap

scientific article published in 1981

Some theory for Fisher's linear discriminant function, `naive Bayes', and some alternatives when there are many more variables than observations ⬇️

scholarly article from 'Bernoulli' published in 2004

Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation

scientific article

Substitution in Conditional Expectation

scientific article published in 1968

System wide analyses have underestimated protein abundances and the importance of transcription in mammals

scientific article published on 27 February 2014

Systematic evaluation of factors influencing ChIP-seq fidelity

scientific article

The Asymptotic Theory of Galton's Test and a Related Simple Estimate of Location

scientific article published in 1967

The method of moments and degree distributions for network models ⬇️

scholarly article from 'The Annals of Statistics' published in 2011

Using Residuals Robustly I: Tests for Heteroscedasticity, Nonlinearity

scientific article published in 1978

List of works by Peter J. Bickel

A model for sequential evolution of ligands by exponential enrichment (SELEX) data

A nonparametric view of network models and Newman-Girvan and other modularities

An assumption-free exact test for fixed-design linear models with exchangeable errors

An overview of recent developments in genomics and associated statistical methods

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

Asymptotic normality of maximum likelihood and its variational approximation for stochastic blockmodels ⬇️

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

Comparative analysis of regulatory information and circuits across distant species

Comparative analysis of the transcriptome across distant species

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data

DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila

David Blackwell, 1919-2010: An explorer in mathematics and statistics

Detecting DNA regulatory motifs by incorporating positional trends in information content

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

Diversity and dynamics of the Drosophila transcriptome

Edgeworth Expansions in Nonparametric Statistics

Estimating motifs under order restrictions

Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy

Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila

Finding important sites in protein sequences

GeneFishing to reconstruct context specific portraits of biological processes

Genome-guided transcript assembly by integrative analysis of RNA sequence data.

Genome-wide analysis of promoter architecture in Drosophila melanogaster.

Hypothesis testing for automated community detection in networks ⬇️

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Likelihood-based model selection for stochastic block models ⬇️

Long noncoding RNAs are rarely translated in two human cell lines

Maximum Likelihood Estimation of Intrinsic Dimension ⬇️

Measuring reproducibility of high-throughput experiments

Metalearners for estimating heterogeneous treatment effects using machine learning

NETWORK MODELLING OF TOPOLOGICAL DOMAINS USING HI-C DATA

Navigating and mining modENCODE data

Nonparametric Variable Selection and Modeling for Spatial and Temporal Regulatory Networks

Nonparametric identification of regulatory interactions from spatial and temporal gene expression data

On Some Alternative Estimates for Shift in the p-Variate One Sample Problem

On Some Robust Estimates of Location

On maximizing item information and matching difficulty with ability

On robust regression with high-dimensional predictors

Optimal M-estimation in high-dimensional regression

Parametric Robustness: Small Biases can be Worthwhile

Projection pursuit in high dimensions

Pseudo-likelihood methods for community detection in large sparse networks ⬇️

Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study

Regularized estimation of large covariance matrices

Simultaneous analysis of Lasso and Dantzig selector

Some Asymptotic Theory for the Bootstrap

Some theory for Fisher's linear discriminant function, `naive Bayes', and some alternatives when there are many more variables than observations ⬇️

Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation

Substitution in Conditional Expectation

System wide analyses have underestimated protein abundances and the importance of transcription in mammals

Systematic evaluation of factors influencing ChIP-seq fidelity

The Asymptotic Theory of Galton's Test and a Related Simple Estimate of Location

The method of moments and degree distributions for network models ⬇️

Using Residuals Robustly I: Tests for Heteroscedasticity, Nonlinearity

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