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List of works by Peter Donnelly

A New Statistical Method for Haplotype Reconstruction from Population Data

scientific article (publication date: April 2001)

A common sequence motif associated with recombination hot spots and genome instability in humans

A comparison of bayesian methods for haplotype reconstruction from population genotype data

scientific article

A comparison of phasing algorithms for trios and unrelated individuals

scientific article

A fine-scale chimpanzee genetic map from population sequencing

scientific article

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

scientific article published in June 2009

A genome-wide association analysis of a broad psychosis phenotype identifies three loci for further investigation

scientific article published on 17 July 2013

A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.

scientific article

A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection

scientific article

A model-based approach to capture genetic variation for future association studies

scientific article

A reassessment of genetic diversity in Icelanders: strong evidence from multiple loci for relative homogeneity caused by genetic drift.

scientific article published in July 2003

A robust clustering algorithm for identifying problematic samples in genome-wide association studies

scientific article published on 3 November 2011

A second generation human haplotype map of over 3.1 million SNPs

scientific article

A statistical method for predicting classical HLA alleles from SNP data

scientific article

Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis

scientific article published on 29 September 2013

Appealing statistics.

scientific article

Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots

scientific article

Assessing allele-specific expression across multiple tissues from RNA-seq read data

scientific article

Assessing association between protein truncating variants and quantitative traits

scientific article published on 16 July 2013

Assessing population differentiation and isolation from single-nucleotide polymorphism data

article by George Nicholson et al published October 2002 in Journal of the Royal Statistical Society Series B: Statistical Methodology

Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants

scientific article

Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank

scientific article published on 31 July 2017

Bayesian hierarchical mixture modeling to assign copy number from a targeted CNV array

scientific article published on 18 July 2011

Bayesian refinement of association signals for 14 loci in 3 common diseases

scientific article published on 28 October 2012

Case-control studies of association in structured or admixed populations.

scientific article

Choice of transcripts and software has a large effect on variant annotation

scientific article

Class II HLA interactions modulate genetic risk for multiple sclerosis

scientific article published on 07 September 2015

Clinical whole-genome sequencing in severe early-onset epilepsy reveals new genes and improves molecular diagnosis

scientific article published on 25 January 2014

Coalescents and genealogical structure under neutrality.

scientific article

Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus

scientific article

Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis

scientific article published on 6 January 2013

Common variants near ATM are associated with glycemic response to metformin in type 2 diabetes

scientific article

Comparison of fine-scale recombination rates in humans and chimpanzees

scientific article published on 10 February 2005

Congenital myasthenic syndromes due to mutations in ALG2 and ALG14.

scientific article

Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip

scientific article

Disease model distortion in association studies ⬇️

scientific article published on 17 March 2011

Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21.

scientific article

Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination

scientific article

Efficient computation with a linear mixed model on large-scale data sets with applications to genetic studies

article

Erratum: Germline mutations affecting the proofreading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas

scientific article published in June 2013

Erratum: Sequence data and association statistics from 12,940 type 2 diabetes cases and controls

scientific article published on 23 January 2018

Erratum: Strong genetic evidence for a selective influence of GABAA receptors on a component of the bipolar disorder phenotype

article

Estimating recombination rates from population genetic data

scientific article

Estimating the Age of the Common Ancestor of Men from the ZFY Intron

scientific article published in Science

Evaluating DNA profile evidence when the suspect is identified through a database search.

scientific article published in July 1996

Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

scientific article published on 5 March 2012

Exome sequencing identifies rare LDLR and APOA5 alleles conferring risk for myocardial infarction

scientific article

Factors influencing meiotic recombination revealed by whole-genome sequencing of single sperm

scientific article published on 01 March 2019

Gene-gene interactions in breast cancer susceptibility

scientific article

Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci

scientific article

Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis

scientific article

Genome mapping with anchored clones: theoretical aspects.

scientific article published in December 1991

Genome-sequencing anniversary. Making sense of the data.

scientific article

Genome-wide and fine-resolution association analysis of malaria in West Africa

scientific article

Genome-wide association analysis identifies 13 new risk loci for schizophrenia

scientific article published in October 2013

Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke

scientific article

Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

scientific article

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls

scientific article

Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region

scientific article

Genome-wide detection and characterization of positive selection in human populations

scientific article

Genome-wide strategies for detecting multiple loci that influence complex diseases

scientific article

Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility

scientific article

Genomic Dissection of Bipolar Disorder and Schizophrenia, Including 28 Subphenotypes

article

Genomic tools for evolution and conservation in the chimpanzee: Pan troglodytes ellioti is a genetically distinct population

scientific article

Germline mutations affecting the proofreading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas ⬇️

scientific article

HAPGEN2: simulation of multiple disease SNPs

scientific article published on 8 June 2011

Homozygous mutations in a predicted endonuclease are a novel cause of congenital dyserythropoietic anemia type I

scientific article published on 28 May 2013

How convincing is DNA evidence?

scientific article published in March 1994

Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome

scientific article

Human metabolic profiles are stably controlled by genetic and environmental variation

scientific article

Human recombination hot spots hidden in regions of strong marker association

article published in 2005

Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci ⬇️

scientific article published on June 9, 2013

Identifying loci affecting trait variability and detecting interactions in genome-wide association studies

scientific article published on 15 October 2018

Including known covariates can reduce power to detect genetic effects in case-control studies

scientific article published on 22 July 2012

Inference in Forensic Identification

Inference of population structure using multilocus genotype data

scientific article (2000)

Inferring coalescence times from DNA sequence data

scientific article published on February 1997

Inferring identify from DNA profile evidence.

scientific article

Insights into Platypus Population Structure and History from Whole-Genome Sequencing.

scientific article published in May 2018

Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility

scientific article

Interpreting genetic variability: the effects of shared evolutionary history.

scientific article published on January 1996

Is mate choice in humans MHC-dependent?

scientific article

Jefferson fathered slave's last child

scientific article

Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes

scientific article

Likelihoods and simulation methods for a class of nonneutral population genetics models.

scientific article

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi.

scientific article published on 6 June 2018

Match probability calculations for multi-locus DNA profiles ⬇️

scientific article published on January 1, 1995

Mosaic PPM1D mutations are associated with predisposition to breast and ovarian cancer

scientific article

Multicohort analysis of the maternal age effect on recombination

scientific article

Multiple instances of ancient balancing selection shared between humans and chimpanzees

scientific article

New models of collaboration in genome-wide association studies: the Genetic Association Information Network

scientific article (publication date: September 2007)

On the Functional Central Limit Theorem for the Ewens Sampling Formula

scientific article published in 1991

Optimal sequencing strategies for surveying molecular genetic diversity.

scientific article

Pairwise comparisons of mitochondrial DNA sequences in subdivided populations and implications for early human evolution.

scientific article

Partition structures, Polya urns, the Ewens sampling formula, and the ages of alleles

scientific article published on 01 October 1986

Patterns of genetic differentiation and the footprints of historical migrations in the Iberian Peninsula

Patterns of genetic differentiation and the footprints of historical migrations in the Iberian Peninsula

scientific article published in Nature Communications

People of the British Isles: preliminary analysis of genotypes and surnames in a UK-control population

scientific article published on 10 August 2011

Peter Donnelly: How juries are fooled by statistics

TEDGlobal 2005

Phenome-wide association studies across large population cohorts support drug target validation

scientific article published in Nature Communications

Platypus and echidna genomes reveal mammalian biology and evolution

scientific article published on 06 January 2021

Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event

scientific article published on 29 January 2012

Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children

scientific article published on 26 May 2016

Progress and promise in understanding the genetic basis of common diseases

scientific article

Quantifying the underestimation of relative risks from genome-wide association studies

scientific article

Re-engineering the zinc fingers of PRDM9 reverses hybrid sterility in mice.

scientific article published on 3 February 2016

Recessive mutations in SPTBN2 implicate β-III spectrin in both cognitive and motor development

scientific article (publication date: 2012)

Recombination and population structure in Salmonella enterica.

scientific article

Recombination in the human Pseudoautosomal region PAR1.

scientific article

Replicating genotype-phenotype associations

scientific article (publication date: 7 June 2007)

Sequence data and association statistics from 12,940 type 2 diabetes cases and controls

scientific article published on 19 December 2017

Sequencing of human genomes with nanopore technology

scientific article published on 23 April 2019

Some interactive particle systems

DPhil Thesis of Peter Donnelly

Strong genetic evidence for a selective influence of GABAA receptors on a component of the bipolar disorder phenotype

scientific article

The Coalescent Process With Selfing ⬇️

scientific article published on July 1, 1997

The UK Biobank resource with deep phenotyping and genomic data

scientific article published in Nature

The ages of alleles and a coalescent

scientific article published in 1986

The correlation between reading and mathematics ability at age twelve has a substantial genetic component

scientific article

The distribution and causes of meiotic recombination in the human genome

scientific article

The effects of human population structure on large genetic association studies

scientific article

The fine-scale genetic structure of the British population

scientific article

The fine-scale structure of recombination rate variation in the human genome

scientific article

The genetic architecture of type 2 diabetes

scientific article (publication date: 11 July 2016)

The influence of recombination on human genetic diversity

scientific article

The mutation rate in the human mtDNA control region

scientific article

The population genealogy of the infinitely--many neutral alleles model.

scientific article published in January 1987

The role of ATM in response to metformin treatment and activation of AMPK.

scientific article

Transcriptome and genome sequencing uncovers functional variation in humans

scientific article

Where Next for Genetics and Genomics?

scientific article

[DNA Fingerprinting: A Review of the Controversy]: Comment: Some Causes for Concern about DNA Profiles

article

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