List of works by Stephanie A. Malfatti

A compendium of multi-omic sequence information from the Saanich Inlet water column

scientific article published on 31 October 2017

A comprehensive multi-omics approach uncovers adaptations for growth and survival of Pseudomonas aeruginosa on n-alkanes

scientific article

A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae

scientific article published on 19 February 2013

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

scholarly article

Community-wide plasmid gene mobilization and selection

scientific article

Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal

scientific article

Comparative genomics suggests an independent origin of cytoplasmic incompatibility in Cardinium hertigii

scientific article

Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000

scientific article

Complete genome sequence of Francisella philomiragia ATCC 25017.

scientific article

Complete genome sequence of Halogeometricum borinquense type strain (PR3)

scientific article

Complete genome sequence of Rhizobium leguminosarum bv trifolii strain WSM2304, an effective microsymbiont of the South American clover Trifolium polymorphum

scientific article

Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419

scientific article (publication date: 28 January 2010)

Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707.

scientific article

Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris

scientific article

Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill

scientific article published on 23 May 2012

Defining the core Arabidopsis thaliana root microbiome

scientific article

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

scientific article

Genome of Ochrobactrum anthropi ATCC 49188 T, a versatile opportunistic pathogen and symbiont of several eukaryotic hosts

scientific article

Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255.

scientific article

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

scientific article published on 08 January 2016

Global distribution of a wild alga revealed by targeted metagenomics

scientific article

Identification of MglA-regulated genes reveals novel virulence factors in Francisella tularensis

scientific article

Insights into the phylogeny and coding potential of microbial dark matter

scientific article

Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens

scientific article (publication date: June 2013)

Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach

scientific article

Mesophilic and thermophilic conditions select for unique but highly parallel microbial communities to perform carboxylate platform biomass conversion

scientific article (publication date: 2012)

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

scientific article

Metagenomes from two microbial consortia associated with Santa Barbara seep oil.

scientific article

Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron

scientific article published on 25 February 2013

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

scientific article

Microbial iron cycling in acidic geothermal springs of yellowstone national park: integrating molecular surveys, geochemical processes, and isolation of novel fe-active microorganisms

scientific article published on 26 March 2012

Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments ⬇️

scholarly article

Pathogenomic Sequence Analysis of Bacillus cereus and Bacillus thuringiensis Isolates Closely Related to Bacillus anthracis

scientific article

Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions

scientific article published on 19 May 2015

Pestoides F, an atypical Yersinia pestis strain from the former Soviet Union.

scientific article published on January 2007

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass

scientific article (publication date: 2013)

Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production ⬇️

scientific article published on July 31, 2010

Tackling soil diversity with the assembly of large, complex metagenomes

scientific article

The DNA sequence and biology of human chromosome 19

scientific article

The complete genome sequence of Bacillus thuringiensis Al Hakam

scientific article published on 2 March 2007

The complete genome sequence of Francisella tularensis, the causative agent of tularemia

scientific article

The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate

scientific article

The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes

scientific article

The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2

scientific article

The metagenome of an anaerobic microbial community decomposing poplar wood chips

scientific article

Whole-Genome Analyses of Speciation Events in Pathogenic Brucellae

scientific article

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