List of works - Didier Boichard

A missense mutation (p.Tyr452Cys) in the CAD gene compromises reproductive success in French Normande cattle

scientific article published on 02 May 2019

A missense mutation in PFAS (phosphoribosylformylglycinamidine synthase) is likely causal for embryonic lethality associated with the MH1 haplotype in Montbéliarde dairy cattle.

scientific article published on 09 August 2017

A multi-scale analysis of bull sperm methylome revealed both species peculiarities and conserved tissue-specific features.

scientific article

A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

scientific article

A system-based analysis of the genetic determinism of udder conformation and health phenotypes across three French dairy cattle breeds

scientific article published on 02 July 2018

Alternative models for QTL detection in livestock. II. Likelihood approximations and sire marker genotype estimations

article by Brigitte Mangin et al published 15 May 1999 in Genetics Selection Evolution

An initiator codon mutation in SDE2 causes recessive embryonic lethality in Holstein cattle.

scientific article published on 18 April 2018

Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health

scientific article

C-Nap1 mutation affects centriole cohesion and is associated with a Seckel-like syndrome in cattle.

scientific article

Characterization of the DGAT1 K232A and variable number of tandem repeat polymorphisms in French dairy cattle

scientific article published on 01 June 2007

Coding and noncoding variants in HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle

scientific article published on 11 August 2016

Combined analysis of data from two granddaughter designs: A simple strategy for QTL confirmation and increasing experimental power in dairy cattle.

scientific article published in May 2003

Comparison of Bayesian and partial least squares regression methods for mid-infrared prediction of cheese-making properties in Montbéliarde cows

scientific article published on 06 June 2019

Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology.

scientific article

Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

scientific article

Design of a bovine low-density SNP array optimized for imputation

scientific article (publication date: 2012)

Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2

scientific article

Efficiency of multi-breed genomic selection for dairy cattle breeds with different sizes of reference population.

scientific article published on 3 April 2014

Estimation of genetic parameters for quantitative trait loci for dairy traits in the French Holstein population

scientific article published on 01 October 2006

Fine mapping and physical characterization of two linked quantitative trait loci affecting milk fat yield in dairy cattle on BTA26.

scientific article

Fine mapping of quantitative trait loci affecting female fertility in dairy cattle on BTA03 using a dense single-nucleotide polymorphism map.

scientific article published on April 2008

Fine tuning genomic evaluations in dairy cattle through SNP pre-selection with the Elastic-Net algorithm ⬇️

scientific article published on December 1, 2011

GRAIN: a computer program to calculate ancestral and partial inbreeding coefficients using a gene dropping approach.

scientific article published in April 2015

Genetic and nongenetic factors contributing to differences in αS-casein phosphorylation isoforms and other major milk proteins.

scientific article published on 17 May 2017

Genetic architecture of individual variation in recombination rate on the X chromosome in cattle

scientific article published on 10 July 2020

Genetic parameters for cheese-making properties and milk composition predicted from mid-infrared spectra in a large data set of Montbéliarde cows

scientific article published on 07 September 2018

Genetic parameters for clinical mastitis, somatic cell score, production, udder type traits, and milking ease in first lactation Holsteins

scientific article published on 01 October 1999

Genetic parameters for first lactation dairy traits in Friesian, Montbéliarde and Normande breeds ⬇️

scientific article published on January 1, 1987

Genetic parameters of milk production traits in response to a short once-daily milking period in crossbred Holstein × Normande dairy cows

scientific article published on 28 December 2017

Genetic tools to improve reproduction traits in dairy cattle.

scientific article published on December 2014

Genetics of resistance to mastitis in dairy cattle.

scientific article published on September 2003

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.

scientific article published on 28 August 2015

Genome-wide association study for milking speed in French Holstein cows

scientific article published on 26 April 2018

Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle.

scientific article

Genomic selection in domestic animals: Principles, applications and perspectives.

scientific article published on 13 May 2016

High-density marker imputation accuracy in sixteen French cattle breeds

scientific article published on 03 September 2013

Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

scientific article published on 24 October 2017

Identification of the ABCC4, IER3, and CBFA2T2 candidate genes for resistance to paratuberculosis from sequence-based GWAS in Holstein and Normande dairy cattle

scientific article published on 17 March 2020

Identification of the putative ancestral allele of bovine single-nucleotide polymorphisms

scientific article published on 26 May 2014

Improvement of genomic prediction by integrating additional single nucleotide polymorphisms selected from imputed whole genome sequencing data

scientific article published on 05 July 2019

Imputation for sequencing variants preselected to a customized low-density chip

scientific article published on 12 June 2020

In silico identification of variations in microRNAs with a potential impact on dairy traits using whole ruminant genome SNP datasets

scientific article published on 01 October 2021

Inbreeding and crossbreeding parameters for production and fertility traits in Holstein, Montbéliarde, and Normande cows

scientific article published on 14 May 2015

Inclusion of cow records in genomic evaluations and impact on bias due to preferential treatment.

scientific article published on 27 December 2012

Influence of production, reproduction, morphology, and health traits on true and functional longevity in French Holstein cows

scientific article published in 2021

Invited review: Low milk somatic cell count and susceptibility to mastitis

scientific article published on 24 May 2018

Joint imputation of whole-genome sequence variants and large chromosomal deletions in cattle

scientific article published on 09 October 2019

LDSO: a program to simulate pedigrees and molecular information under various evolutionary forces.

scientific article published on 23 January 2012

Longitudinal study of Mycobacterium avium ssp. paratuberculosis fecal shedding patterns and concurrent serological patterns in naturally infected dairy cattle

scientific article published on 01 August 2019

Mapping Quantitative Trait Loci for Milk Production and Health of Dairy Cattle in a Large Outbred Pedigree ⬇️

scientific article published on August 1, 1998

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

scientific article published on 19 February 2018

Multivariate restricted maximum likelihood estimation of genetic parameters for growth, carcass and meat quality traits in French Large White and French Landrace pigs.

scientific article

New phenotypes for new breeding goals in dairy cattle ⬇️

scientific article published on April 1, 2012

Opportunities for genomic selection of cheese-making traits in Montbéliarde cows

scientific article published in 2022

Predicting male fertility from the sperm methylome: application to 120 bulls with hundreds of artificial insemination records

scientific article published on 27 April 2022

Progressive ataxia of Charolais cattle highlights a role of KIF1C in sustainable myelination

scientific article published on 01 August 2018

Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction.

scientific article

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

scientific article published on 13 September 2017

Relationship between milk somatic-cell counts in the first lactation and clinical mastitis occurrence in the second lactation of French Holstein cows

scientific article published on 01 July 2000

Restricted maximum likelihood estimates of genetic parameters of adult male and female Rhode Island red chickens divergently selected for residual feed consumption

scientific article published on 01 August 1995

Sequence variants selected from a multi-breed GWAS can improve the reliability of genomic predictions in dairy cattle

scientific article

Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows

scientific article published on 01 July 2019

Short communication: A splice site mutation in CENPU is associated with recessive embryonic lethality in Holstein cattle

scientific article published on 14 November 2019

Short communication: Confirmation of candidate causative variants on milk composition and cheesemaking properties in Montbéliarde cows

scientific article published on 13 September 2018

Short communication: Genetic parameters for milk protein composition predicted using mid-infrared spectroscopy in the French Montbéliarde, Normande, and Holstein dairy cattle breeds.

scientific article published on 14 June 2017

Short communication: Imputation performances of 3 low-density marker panels in beef and dairy cattle ⬇️

scientific article published on July 1, 2012

Short communication: correlations of marker-assisted breeding values with progeny-test breeding values for eight hundred ninety-nine French Holstein bulls

scientific article published on 01 June 2008

Studies on dairy production of milking ewes. I. - Estimates of genetic parameters for total milk composition and yield.

scientific article published on January 1987

Sustainable dairy cattle selection in the genomic era.

scientific article

The extent of linkage disequilibrium in a large cattle population of western Africa and its consequences for association studies.

scientific article published on 24 April 2007

Three methods to validate the estimation of genetic trend for dairy cattle.

scientific article published in February 1995

Use of sexed semen and female genotyping affects genetic and economic outcomes of Montbéliarde dairy herds depending on the farming system considered

scientific article published on 22 August 2019

Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle.

scientific article published on 18 September 2017

List of works by Didier Boichard

A missense mutation (p.Tyr452Cys) in the CAD gene compromises reproductive success in French Normande cattle

A missense mutation in PFAS (phosphoribosylformylglycinamidine synthase) is likely causal for embryonic lethality associated with the MH1 haplotype in Montbéliarde dairy cattle.

A multi-scale analysis of bull sperm methylome revealed both species peculiarities and conserved tissue-specific features.

A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds

A system-based analysis of the genetic determinism of udder conformation and health phenotypes across three French dairy cattle breeds

Alternative models for QTL detection in livestock. II. Likelihood approximations and sire marker genotype estimations

An initiator codon mutation in SDE2 causes recessive embryonic lethality in Holstein cattle.

Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health

C-Nap1 mutation affects centriole cohesion and is associated with a Seckel-like syndrome in cattle.

Characterization of the DGAT1 K232A and variable number of tandem repeat polymorphisms in French dairy cattle

Coding and noncoding variants in HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle

Combined analysis of data from two granddaughter designs: A simple strategy for QTL confirmation and increasing experimental power in dairy cattle.

Comparison of Bayesian and partial least squares regression methods for mid-infrared prediction of cheese-making properties in Montbéliarde cows

Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology.

Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

Design of a bovine low-density SNP array optimized for imputation

Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2

Efficiency of multi-breed genomic selection for dairy cattle breeds with different sizes of reference population.

Estimation of genetic parameters for quantitative trait loci for dairy traits in the French Holstein population

Fine mapping and physical characterization of two linked quantitative trait loci affecting milk fat yield in dairy cattle on BTA26.

Fine mapping of quantitative trait loci affecting female fertility in dairy cattle on BTA03 using a dense single-nucleotide polymorphism map.

Fine tuning genomic evaluations in dairy cattle through SNP pre-selection with the Elastic-Net algorithm ⬇️

GRAIN: a computer program to calculate ancestral and partial inbreeding coefficients using a gene dropping approach.

Genetic and nongenetic factors contributing to differences in αS-casein phosphorylation isoforms and other major milk proteins.

Genetic architecture of individual variation in recombination rate on the X chromosome in cattle

Genetic parameters for cheese-making properties and milk composition predicted from mid-infrared spectra in a large data set of Montbéliarde cows

Genetic parameters for clinical mastitis, somatic cell score, production, udder type traits, and milking ease in first lactation Holsteins

Genetic parameters for first lactation dairy traits in Friesian, Montbéliarde and Normande breeds ⬇️

Genetic parameters of milk production traits in response to a short once-daily milking period in crossbred Holstein × Normande dairy cows

Genetic tools to improve reproduction traits in dairy cattle.

Genetics of resistance to mastitis in dairy cattle.

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.

Genome-wide association study for milking speed in French Holstein cows

Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle.

Genomic selection in domestic animals: Principles, applications and perspectives.

High-density marker imputation accuracy in sixteen French cattle breeds

Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

Identification of the ABCC4, IER3, and CBFA2T2 candidate genes for resistance to paratuberculosis from sequence-based GWAS in Holstein and Normande dairy cattle

Identification of the putative ancestral allele of bovine single-nucleotide polymorphisms

Improvement of genomic prediction by integrating additional single nucleotide polymorphisms selected from imputed whole genome sequencing data

Imputation for sequencing variants preselected to a customized low-density chip

In silico identification of variations in microRNAs with a potential impact on dairy traits using whole ruminant genome SNP datasets

Inbreeding and crossbreeding parameters for production and fertility traits in Holstein, Montbéliarde, and Normande cows

Inclusion of cow records in genomic evaluations and impact on bias due to preferential treatment.

Influence of production, reproduction, morphology, and health traits on true and functional longevity in French Holstein cows

Invited review: Low milk somatic cell count and susceptibility to mastitis

Joint imputation of whole-genome sequence variants and large chromosomal deletions in cattle

LDSO: a program to simulate pedigrees and molecular information under various evolutionary forces.

Longitudinal study of Mycobacterium avium ssp. paratuberculosis fecal shedding patterns and concurrent serological patterns in naturally infected dairy cattle

Mapping Quantitative Trait Loci for Milk Production and Health of Dairy Cattle in a Large Outbred Pedigree ⬇️

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Multivariate restricted maximum likelihood estimation of genetic parameters for growth, carcass and meat quality traits in French Large White and French Landrace pigs.

New phenotypes for new breeding goals in dairy cattle ⬇️

Opportunities for genomic selection of cheese-making traits in Montbéliarde cows

Predicting male fertility from the sperm methylome: application to 120 bulls with hundreds of artificial insemination records

Progressive ataxia of Charolais cattle highlights a role of KIF1C in sustainable myelination

Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction.

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

Relationship between milk somatic-cell counts in the first lactation and clinical mastitis occurrence in the second lactation of French Holstein cows

Restricted maximum likelihood estimates of genetic parameters of adult male and female Rhode Island red chickens divergently selected for residual feed consumption

Sequence variants selected from a multi-breed GWAS can improve the reliability of genomic predictions in dairy cattle

Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows

Short communication: A splice site mutation in CENPU is associated with recessive embryonic lethality in Holstein cattle

Short communication: Confirmation of candidate causative variants on milk composition and cheesemaking properties in Montbéliarde cows

Short communication: Genetic parameters for milk protein composition predicted using mid-infrared spectroscopy in the French Montbéliarde, Normande, and Holstein dairy cattle breeds.

Short communication: Imputation performances of 3 low-density marker panels in beef and dairy cattle ⬇️

Short communication: correlations of marker-assisted breeding values with progeny-test breeding values for eight hundred ninety-nine French Holstein bulls

Studies on dairy production of milking ewes. I. - Estimates of genetic parameters for total milk composition and yield.

Sustainable dairy cattle selection in the genomic era.

The extent of linkage disequilibrium in a large cattle population of western Africa and its consequences for association studies.

Three methods to validate the estimation of genetic trend for dairy cattle.

Use of sexed semen and female genotyping affects genetic and economic outcomes of Montbéliarde dairy herds depending on the farming system considered

Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle.