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List of works by Paul Ahlquist

5' cis Elements Direct Nodavirus RNA1 Recruitment to Mitochondrial Sites of Replication Complex Formation

scientific article

An Amphipathic α-Helix Controls Multiple Roles of Brome Mosaic Virus Protein 1a in RNA Replication Complex Assembly and Function

scientific article (publication date: March 2009)

An alternate pathway for recruiting template RNA to the brome mosaic virus RNA replication complex

scientific article

Augmenting subnetwork inference with information extracted from the scientific literature

scientific article published on 27 June 2019

Brome mosaic virus 1a nucleoside triphosphatase/helicase domain plays crucial roles in recruiting RNA replication templates.

scientific article

Brome mosaic virus RNA replication: revealing the role of the host in RNA virus replication

scientific article

CARM1 Methylates Chromatin Remodeling Factor BAF155 to Enhance Tumor Progression and Metastasis

scientific article (publication date: 11 July 2016)

CARM1 methylates chromatin remodeling factor BAF155 to enhance tumor progression and metastasis

scientific article

Cellular transcription factor ZASC1 regulates murine leukemia virus transcription

scientific article

Cooperativity among Rev-associated nuclear export signals regulates HIV-1 gene expression and is a determinant of virus species tropism

scientific article

Cryo-electron tomography reveals novel features of a viral RNA replication compartment

scientific article published on 27 June 2017

Diverse activities of viral cis-acting RNA regulatory elements revealed using multicolor, long-term, single-cell imaging

scientific article

Drosophila RNAi screen identifies host genes important for influenza virus replication

scientific article

Establishment of human papillomavirus infection requires cell cycle progression

scientific article

Flock house virus RNA polymerase is a transmembrane protein with amino-terminal sequences sufficient for mitochondrial localization and membrane insertion

scientific article

Fundamental differences in cell cycle deregulation in human papillomavirus-positive and human papillomavirus-negative head/neck and cervical cancers

scientific article

Genes involved in DNA repair and nitrosamine metabolism and those located on chromosome 14q32 are dysregulated in nasopharyngeal carcinoma

scientific article

Genome-wide analysis of host factors in nodavirus RNA replication

scientific article

Genome-wide expression profiling reveals EBV-associated inhibition of MHC class I expression in nasopharyngeal carcinoma

scientific article

HIV-1 and M-PMV RNA Nuclear Export Elements Program Viral Genomes for Distinct Cytoplasmic Trafficking Behaviors.

scientific article

Host ESCRT proteins are required for bromovirus RNA replication compartment assembly and function

scientific article published on 6 March 2015

Host Factors in Positive-Strand RNA Virus Genome Replication

scientific article

Inducible yeast system for Viral RNA recombination reveals requirement for an RNA replication signal on both parental RNAs

scientific article

Inferring host gene subnetworks involved in viral replication

scientific article

Limited agreement of independent RNAi screens for virus-required host genes owes more to false-negative than false-positive factors

scientific article

Long-distance base pairing in flock house virus RNA1 regulates subgenomic RNA3 synthesis and RNA2 replication

scientific article

Membrane-shaping host reticulon proteins play crucial roles in viral RNA replication compartment formation and function

scientific article

MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins

scientific article

Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

scientific article published on 8 June 2015

Mutation of host DnaJ homolog inhibits brome mosaic virus negative-strand RNA synthesis

scientific article

Mutual interference between genomic RNA replication and subgenomic mRNA transcription in brome mosaic virus

scientific article

Nodavirus-induced membrane rearrangement in replication complex assembly requires replicase protein a, RNA templates, and polymerase activity

scientific article

Novel antivirals inhibit early steps in HPV infection

scientific article

Organelle luminal dependence of (+)strand RNA virus replication reveals a hidden druggable target

scientific article published on 24 January 2018

Organelle-Like Membrane Compartmentalization of Positive-Strand RNA Virus Replication Factories ⬇️

scientific article published on January 1, 2010

Production of infectious human papillomavirus independently of viral replication and epithelial cell differentiation

scientific article

RNA-dependent RNA polymerases, viruses, and RNA silencing

scientific article

Statistical use of argonaute expression and RISC assembly in microRNA target identification

scientific article

Structural analysis and modeling reveals new mechanisms governing ESCRT-III spiral filament assembly

scientific article

Subdomain cryo-EM structure of nodaviral replication protein A crown complex provides mechanistic insights into RNA genome replication

scientific article published on 20 July 2020

Sulfonation pathway inhibitors block reactivation of latent HIV-1.

scientific article

Systematic Identification of Novel, Essential Host Genes Affecting Bromovirus RNA Replication ⬇️

scientific article published on August 22, 2011

Systematic analyses of the cytotoxic effects of compound 11a, a putative synthetic agonist of photoreceptor-specific nuclear receptor (PNR), in cancer cell lines

scientific article

Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus

scientific article

The host cell sulfonation pathway contributes to retroviral infection at a step coincident with provirus establishment

scientific article

Three-dimensional analysis of a viral RNA replication complex reveals a virus-induced mini-organelle

scientific article (publication date: September 2007)

Top 10 plant viruses in molecular plant pathology

scientific article

Yeast Lsm1p-7p/Pat1p deadenylation-dependent mRNA-decapping factors are required for brome mosaic virus genomic RNA translation

scientific article

ZASC1 stimulates HIV-1 transcription elongation by recruiting P-TEFb and TAT to the LTR promoter

scientific article

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