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List of works by Patrick John Keeling

(048-051) Proposals to Exclude the Phylum Microsporidia from the Code

scientific article (publication date: May 2009)

A Brief History of Plastids and their Hosts

scientific article published on 01 March 2004

A Comparative Overview of the Flagellar Apparatus of Dinoflagellate, Perkinsids and Colpodellids

scientific article

A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction

scientific article published on 15 November 2017

A Novel Polyubiquitin Structure in Cercozoa and Foraminifera: Evidence for a New Eukaryotic Supergroup

article

A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. fam. and a Type Species, Eupelagonema oceanica n. gen. & sp

scientific article published on 29 August 2018

A bacterial proteorhodopsin proton pump in marine eukaryotes

scientific article

A broad distribution of the alternative oxidase in microsporidian parasites

scientific article

A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1alpha

scholarly article

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

scientific article

A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer

scientific article

A complex distribution of elongation family GTPases EF1A and EFL in basal alveolate lineages

scientific article published on September 2014

A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem

scientific article published on 10 April 2019

A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators

scientific article published on 23 September 2019

A high density of ancient spliceosomal introns in oxymonad excavates

scientific article published on 25 April 2006

A high frequency of overlapping gene expression in compacted eukaryotic genomes

scientific article

A kingdom's progress: Archezoa and the origin of eukaryotes

A kleptoplastidic dinoflagellate and the tipping point between transient and fully integrated plastid endosymbiosis

scientific article published on 19 August 2019

A lack of parasitic reduction in the obligate parasitic green alga Helicosporidium

scientific article (publication date: May 2014)

A new case of kleptoplasty in animals: Marine flatworms steal functional plastids from diatoms

scientific article published on 17 July 2019

A new vesicular compartment in Encephalitozoon cuniculi

scientific article published on 28 November 2011

A single cryptomonad cell harbors a complex community of organelles, bacteria, a phage, and selfish elements

scientific article published in May 2023

A tertiary plastid uses genes from two endosymbionts

scientific article published on 9 February 2006

A transcriptional fusion of genes encoding glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and enolase in dinoflagellates

scientific article published on July 2005

A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes

scientific article published on 03 April 2019

Acquisition of an animal gene by microsporidian intracellular parasites

scientific article published on August 2011

Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens

scientific article

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

scientific article

Alpha and beta subunits of pyruvate dehydrogenase E1 from the microsporidian Nosema locustae: mitochondrion-derived carbon metabolism in microsporidia

scientific article

Alpha- and beta-tubulin phylogenies support a close relationship between the microsporidia Brachiola algerae and Antonospora locustae.

scientific article

Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family

scientific article published in December 1996

Alveolate and chlorophycean mitochondrial cox2 genes split twice independently

scientific article

Amalga-like virus infecting Antonospora locustae, a microsporidian pathogen of grasshoppers, plus related viruses associated with other arthropods

scientific article

An ADP/ATP-specific mitochondrial carrier protein in the microsporidian Antonospora locustae

scientific article

An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome

scientific article published on 24 April 2019

An infB-Homolog in Sulfolobus acidocaldarius

scientific article published in 1996

An introduction to the special issue: Oxyrrhis marina, a model organism?

article

Analysis of EST data of the marine protist Oxyrrhis marina, an emerging model for alveolate biology and evolution

scientific article

Analysis of the beta-tubulin genes from Enterocytozoon bieneusi isolates from a human and rhesus macaque

scientific article

Archaea: narrowing the gap between prokaryotes and eukaryotes

scientific article

Archaebacterial genomes: eubacterial form and eukaryotic content

scientific article published on December 1994

Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes

scientific article

Arrhythmia and hypertrophic cardiomyopathy

scientific article published on December 1, 1992

Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework

scientific article published on 23 October 2019

Bacterial catalase in the microsporidian Nosema locustae: implications for microsporidian metabolism and genome evolution.

scientific article published in October 2003

Biogeography and Character Evolution of the Ciliate Genus Euplotes (Spirotrichea, Euplotia), with Description of Euplotes curdsi sp. nov

scientific article (publication date: 2016)

Branching network of proteinaceous filaments within the parasitophorous vacuole of Encephalitozoon cuniculi and Encephalitozoon hellem.

scientific article

Bridge over troublesome plastids

scientific article published in Nature

Broad genomic and transcriptional analysis reveals a highly derived genome in dinoflagellate mitochondria

scientific article

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

scientific article

COMMON EVOLUTIONARY ORIGIN OF STARCH BIOSYNTHETIC ENZYMES IN GREEN AND RED ALGAE1

article by Nicola J Patron & Patrick J. Keeling published 16 November 2005 in Journal of Phycology

Cascades of convergent evolution: the corresponding evolutionary histories of euglenozoans and dinoflagellates

scholarly article

Causes and effects of nuclear genome reduction

scientific article

Centrohelid heliozoans of Ukraine with a description of a new genus and species (Haptista: Centroplasthelida)

scientific article published in 2022

Characterisation of a non-canonical genetic code in the oxymonad Streblomastix strix

scientific article published in March 2003

Characterization of a divergent Sec61beta gene in microsporidia

scientific article

Characterization of new cristamonad species from kalotermitid termites including a novel genus, Runanympha ⬇️

scholarly article published in 2021

Characterization of periplastidal compartment-targeting signals in chlorarachniophytes

scientific article published on 4 February 2010

Chlorarachniophytes

Chromalveolates and the evolution of plastids by secondary endosymbiosis

scientific article (publication date: 2009)

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites

scientific article

Chromulinavorax destructans, a pathogen of microzooplankton that provides a window into the enigmatic candidate phylum Dependentiae.

scientific article published on 31 May 2019

Chromulinavorax destructans, a pathogenic TM6 bacterium with an unusual replication strategy targeting protist mitochondrion

Class II photolyase in a microsporidian intracellular parasite

scientific article published on August 2004

Collodictyon--an ancient lineage in the tree of eukaryotes

scientific article

Colpodella spp.-like parasite infection in woman, China

scientific article published in January 2012

Colponemids represent multiple ancient alveolate lineages

scientific article

Combining morphology, behaviour and genomics to understand the evolution and ecology of microbial eukaryotes

scientific article published on 07 October 2019

Comment on "A green algal apicoplast ancestor"

scientific article published on 01 July 2003

Comment on "The evolution of modern eukaryotic phytoplankton".

scientific article published in December 2004

Comment on “Does constructive neutral evolution play an important role in the origin of cellular complexity?” DOI 10.1002/bies.201100010

article

Comparative genomics of microsporidia.

scientific article

Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation

scientific article

Comparative profiling of overlapping transcription in the compacted genomes of microsporidia Antonospora locustae and Encephalitozoon cuniculi

scientific article published on 20 February 2008

Comparative rates of evolution in endosymbiotic nuclear genomes

scientific article published on 14 June 2006

Complete genome sequences from three genetically distinct strains reveal high intraspecies genetic diversity in the microsporidian Encephalitozoon cuniculi

scientific article published on 4 January 2013

Complete nucleotide sequence of the Sulfolobus islandicus multicopy plasmid pRN1.

scientific article published on March 1996

Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus

scientific article

Complex distribution of EFL and EF-1alpha proteins in the green algal lineage

scientific article

Complex phylogenetic distribution of a non-canonical genetic code in green algae

scientific article

Complex protein targeting to dinoflagellate plastids

scientific article published in May 2005

Concerted evolution in protists: recent homogenization of a polyubiquitin gene in Trichomonas vaginalis

scientific article published in November 1995

Congruent evidence from alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of microsporidia

scientific article published in April 2003

Contributions of Oxyrrhis marina to molecular biology, genomics and organelle evolution of dinoflagellates

scholarly article by Claudio H. Slamovits published in December 2010

Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink

scientific article published on 09 January 2020

Correlated SEM, FIB-SEM, TEM, and NanoSIMS imaging of microbes from the hindgut of a lower termite: methods for in situ functional and ecological studies of uncultivable microbes.

scientific article published on 11 October 2013

Corrigendum to "A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem" [Mol. Phylogenet. Evol. 136 (2019) 138-150]

scientific article published on 18 September 2019

Cryptic organelles in parasitic protists and fungi

scientific article published on January 2003

Cthulhu Macrofasciculumque n. g., n. sp. and Cthylla Microfasciculumque n. g., n. sp., a newly identified lineage of parabasalian termite symbionts

scientific article published on 18 March 2013

DNA BARCODING OF CHLORARACHNIOPHYTES USING NUCLEOMORPH ITS SEQUENCES1

Description of Colponema vietnamica sp.n. and Acavomonas peruviana n. gen. n. sp., two new alveolate phyla (Colponemidia nom. nov. and Acavomonidia nom. nov.) and their contributions to reconstructing the ancestral state of alveolates and eukaryotes

scientific article (publication date: 2014)

Description of two species of early branching dinoflagellates, Psammosa pacifica n. g., n. sp. and P. atlantica n. sp

scientific article

Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements

scientific article

Dinoflagellate nucleus contains an extensive endomembrane network, the nuclear net

scientific article published in Scientific Reports

Diplonemids – A Review on "New" Flagellates on the Oceanic Block

scientific article published in April 2022

Distinct localization patterns of two putative mitochondrial proteins in the microsporidian Encephalitozoon cuniculi

scientific article published in March 2008

Distribution and phylogeny of EFL and EF-1alpha in Euglenozoa suggest ancestral co-occurrence followed by differential loss

scientific article

Divergent genomic trajectories predate the origin of animals and fungi

Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites.

scientific article

Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean

scientific article

Diversity and evolutionary history of plastids and their hosts ⬇️

scientific article published on October 1, 2004

Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions

scientific article

Dual targeting of aminoacyl-tRNA synthetases to the mitochondrion and complex plastid in chlorarachniophytes

scientific article published on 4 October 2012

EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES1

EFL GTPase in Cryptomonads and the Distribution of EFL and EF-1α in Chromalveolates

scientific article published on 10 August 2006

Early eukaryotic origins and metazoan elaboration of MAPR family proteins

scientific article published on 08 April 2020

Ecological Genomics of the Microsporidia

Endosymbiosis: Bacteria Sharing the Load ⬇️

scientific article published on August 23, 2011

Endosymbiosis: The feeling is not mutual

scientific article published on 14 June 2017

Endosymbiosis: protein targeting further erodes the organelle/symbiont distinction

scientific article published in July 2014

Endosymbiotic gene transfer in tertiary plastid-containing dinoflagellates

scientific article published on 02 December 2013

Environmental PCR survey to determine the distribution of a non-canonical genetic code in uncultivable oxymonads

scientific article published on January 2008

Environmental barcoding reveals massive dinoflagellate diversity in marine environments

scientific article published in 2010

Environmental distribution of coral-associated relatives of apicomplexan parasites

scientific article

Environmental science. Rethinking the marine carbon cycle: factoring in the multifarious lifestyles of microbes

scientific article

Erratum: Corrigendum: A bacterial proteorhodopsin proton pump in marine eukaryotes

scientific article published in Nature Communications

Euglenozoan kleptoplasty illuminates the early evolution of photoendosymbiosis

scientific article published on 16 March 2023

EukRef-Ciliophora: a manually curated, phylogeny-based database of small subunit rRNA gene sequences of ciliates

scientific article published on 01 June 2018

EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution

scientific article published on 17 September 2018

Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate barcode marker

scientific article published in 2012

Evidence for the retention of two evolutionary distinct plastids in dinoflagellates with diatom endosymbionts

scientific article

Evidence for transitional stages in the evolution of euglenid group II introns and twintrons in the Monomorphina aenigmatica plastid genome

scientific article

Evidence from SSU rRNA phylogeny that Octomitus is a sister lineage to Giardia

scientific article

Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi

scientific article (publication date: 2000)

Evidence that eukaryotic triosephosphate isomerase is of alpha-proteobacterial origin

scientific article

Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast

scientific article

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

scientific article

Evolution of Ultrasmall Spliceosomal Introns in Highly Reduced Nuclear Genomes

scientific article published on 20 April 2009

Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids

scientific article published on 02 March 2020

Evolution of red algal plastid genomes: ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers

scientific article

Evolution of the sex-related locus and genomic features shared in microsporidia and fungi

scientific article

Evolution: Causality and the Origin of Parasitism

scientific article published on 01 February 2016

Evolutionary relationship between translation initiation factor eIF-2gamma and selenocysteine-specific elongation factor SELB: change of function in translation factors

scientific article published in December 1998

Expressed sequence tag (EST) survey of the highly adapted green algal parasite, Helicosporidium

scientific article published in August 2005

Extensive Reduction of the Nuclear Pore Complex in Nucleomorphs

scientific article published in 2019

Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase.

scientific article published on 27 March 2018

Eye-like ocelloids are built from different endosymbiotically acquired components

scientific article

Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives

scientific article

Fe-S Cluster Assembly in Oxymonads and Related Protists

scientific article published on 01 November 2018

First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolution

scientific article published on 24 November 2011

First finding of free-living representatives of Prokinetoplastina and their nuclear and mitochondrial genomes ⬇️

scientific article

Fish Parasite Dinoflagellates Haidadinium ichthyophilum and Piscinoodinium Share a Recent Common Ancestor.

scientific article published on 25 May 2017

Five questions about microsporidia

scientific article published in September 2009

Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home?

scientific article published in August 2001

Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies

scientific article

Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont

scientific article published on 13 June 2016

Functional and ecological impacts of horizontal gene transfer in eukaryotes

scientific article

GENOMICS: Deep Questions in the Tree of Life

scientific article published in Science

Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites

scientific article

Gene Conversion Shapes Linear Mitochondrial Genome Architecture ⬇️

scientific article published on January 1, 2013

Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate

scientific article published on 12 September 2020

Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates

scientific article

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

scientific article published on 06 April 2020

Genome Compaction and Stability in Microsporidian Intracellular Parasites

Genome Evolution and Nitrogen Fixation in Bacterial Ectosymbionts of a Protist Inhabiting Wood-Feeding Cockroaches

scientific article

Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities.

scientific article published on 29 April 2008

Genome-based reconstruction of the protein import machinery in the secondary plastid of a chlorarachniophyte alga

scientific article

Genomic analyses of Symbiomonas scintillans show no evidence for endosymbiotic bacteria but does reveal the presence of giant viruses

scientific article published in April 2024

Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi

scientific article

Genomics: Evolution of the Genetic Code

scientific article published on September 2016

Global Diversity and Distribution of Close Relatives of Apicomplexan Parasites.

scientific article

Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs.

scientific article

Global distribution of a wild alga revealed by targeted metagenomics

scientific article

HSP90, tubulin and actin are retained in the tertiary endosymbiont genome of Kryptoperidinium foliaceum

scientific article

Heterotrophic flagellates and centrohelid heliozoans from marine waters of Curacao, the Netherlands Antilles

scientific article published on 20 November 2020

High Prevalence and Endemism of Trypanosomatids on a Small Caribbean Island

scientific article published on 18 December 2018

High-throughput environmental sequencing reveals high diversity of litter and moss associated protist communities along a gradient of drainage and tree productivity.

scientific article published on 7 February 2018

Highly Reduced Genomes of Protist Endosymbionts Show Evolutionary Convergence

scientific article published on 23 January 2020

Highly divergentCaenorhabditis andSaccharomyces tubulins evolved recently from genes encoding γ-tubulin

article

Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms

scientific article published on February 2014

Horizontal gene transfer in eukaryotic evolution

scientific article

Horizontal transfer of a eukaryotic plastid-targeted protein gene to cyanobacteria

scientific article

How a neutral evolutionary ratchet can build cellular complexity

scientific article published on July 2011

How exaptations facilitated photosensory evolution: Seeing the light by accident

scientific article published on June 2017

Identification of plant-like galactolipids in Chromera velia, a photosynthetic relative of malaria parasites

scientific article

Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing

scientific article

Increasing student understanding of microscope optics by building and testing the limits of simple, hand-made model microscopes.

scientific article

Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals

scientific article published on 09 April 2020

Intragenomic spread of plastid-targeting presequences in the coccolithophore Emiliania huxleyi

scientific article published on 30 March 2012

Irremediable Complexity?

scientific article published in Science

LESSARDIA ELONGATA GEN. ET SP. NOV. (DINOFLAGELLATA, PERIDINIALES, PODOLAMPACEAE) AND THE TAXONOMIC POSITION OF THE GENUS ROSCOFFIA1

scientific article published on 28 March 2003

Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates

scientific article

Lateral Gene Transfer of a Multigene Region from Cyanobacteria to Dinoflagellates Resulting in a Novel Plastid-Targeted Fusion Protein

article

Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis

scientific article published on 01 November 2000

Lateral gene transfer and the complex distribution of insertions in eukaryotic enolase

scientific article

Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans

scientific article

Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae

scientific article published in April 2004

Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase

scientific article

Life in science. Creationists made me do it.

scientific article published in August 2009

Linked genes for calmodulin and E2 ubiquitin-conjugating enzyme in Trichomonas vaginalis

scientific article published in November 1996

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

scientific article

Marine Protists Are Not Just Big Bacteria

scientific article published on June 2017

Microbial arms race: Ballistic "nematocysts" in dinoflagellates represent a new extreme in organelle complexity.

scientific article published on 31 March 2017

Microbial communities in sandy beaches from the three domains of life differ by microhabitat and intertidal location

scientific article published in 2022

Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis

scientific article

Microbiomes of microscopic marine invertebrates do not reveal signatures of phylosymbiosis

scientific article published in 2022

Microscopic marine invertebrates are reservoirs for cryptic and diverse protists and fungi

scientific article published in 2022

Microsporidia - Emergent Pathogens in the Global Food Chain

scientific article

Microsporidia evolved from ancestral sexual fungi

scientific article

Microsporidia: Biology and Evolution of Highly Reduced Intracellular Parasites

scientific article (publication date: October 2002)

Microsporidia: a journey through radical taxonomical revisions

article by Nicolas Corradi & Patrick J. Keeling published February 2009 in Fungal Biology Reviews

Microsporidian Genome Structure and Function

Microsporidian mitochondrial proteins: expression in Antonospora locustae spores and identification of genes coding for two further proteins

scientific article published in May 2005

Microsporidian mitosomes retain elements of the general mitochondrial targeting system

scholarly article

Microsporidia–Emergent Pathogens in the Global Food Chain (Trends in Parasitology 32 , 336–348; April 2, 2016)

scientific article published on 27 June 2016

Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes

scientific article

Mitochondrial genome of a tertiary endosymbiont retains genes for electron transport proteins

scientific article

Molecular Evidence for the Polyphyly of Macrotrichomonas (Parabasalia: Cristamonadea) and a Proposal for Macrotrichomonoides n. gen.

scientific article

Molecular and morphological analysis of the family Calonymphidae with a description of Calonympha chia sp. nov., Snyderella kirbyi sp. nov., Snyderella swezyae sp. nov. and Snyderella yamini sp. nov.

scientific article

Molecular characterization and phylogeny of four new species of the genus Trichonympha (Parabasalia, Trichonymphea) from lower termite hindguts

scientific article published on 25 August 2017

Molecular characterization of parabasalian symbionts Coronympha clevelandii and Trichonympha subquasilla from the Hawaiian lowland tree termite Incisitermes immigrans

scientific article published on 5 February 2013

Molecular data and the evolutionary history of dinoflagellates

article by Juan F. Saldarriaga et al published May 2004 in European Journal of Protistology

Molecular phylogenetics of sessile <i>Dolium sedentarium</i>, a petalomonad euglenid

scientific article published in 2023

Molecular phylogenies of Parabasalia inferred from four protein genes and comparison with rRNA trees

scientific article published in May 2004

Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov

scientific article published in 2009

Molecular phylogeny and surface morphology of Colpodella edax (Alveolata): insights into the phagotrophic ancestry of apicomplexans

scientific article

Molecular phylogeny and surface morphology of marine aseptate gregarines (Apicomplexa): Selenidium spp. and Lecudina spp.

scientific article

Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles

scientific article published in June 2022

Moramonas marocensis gen. nov., sp. nov.: a jakobid flagellate isolated from desert soil with a bacteria-like, but bloated mitochondrial genome

scientific article

Morphological Identification and Single-Cell Genomics of Marine Diplonemids

scientific article

Morphological diversity between culture strains of a chlorarachniophyte, Lotharella globosa

scientific article

Morphology and molecular phylogeny of Pseudotrichonympha hertwigi and Pseudotrichonympha paulistana (Trichonymphea, parabasalia) from neotropical rhinotermitids

scientific article published on 7 September 2011

Morphology and molecular phylogeny of Staurojoenina mulleri sp. nov. (Trichonymphida, Parabasalia) from the hindgut of the kalotermitid Neotermes jouteli

scientific article

Morphology and phylogenetic position of Eucomonympha imla (Parabasalia: Hypermastigida).

scientific article

Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of apicomplexa, Chromera velia.

scientific article

Morphology, phylogeny, and diversity of Trichonympha (Parabasalia: Hypermastigida) of the wood-feeding cockroach Cryptocercus punctulatus

scientific article published in July 2009

Morphostasis in alveolate evolution

scientific article published in 2003

Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs

scholarly article published in 2021

Multiple Independent Origins of Apicomplexan-Like Parasites

scientific article published on 15 August 2019

Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages

scientific article published on 26 April 2007

Multiple parallel origins of parasitic Marine Alveolates

scientific article published on 3 November 2023

Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage

scientific article

New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals

scientific article published on 16 September 2020

New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals

scientific article published in 2020

New Species of Spirotrichonympha from Reticulitermes and the Relationships Among Genera in Spirotrichonymphea (Parabasalia).

scientific article published on 15 July 2017

Non-photosynthetic predators are sister to red algae

scientific article published on 17 July 2019

Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals

scientific article published on 15 June 2017

Novel ubiquitin fusion proteins: ribosomal protein P1 and actin

scientific article published on May 2003

Nuclear genome sequence survey of the Dinoflagellate Heterocapsa triquetra

scientific article published in November 2008

Nuclear-encoded proteins target to the plastid in Toxoplasma gondii and Plasmodium falciparum

scientific article (publication date: 13 October 1998)

Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids.

scientific article

Nucleus- and nucleomorph-targeted histone proteins in a chlorarachniophyte alga

scientific article published on 6 April 2011

Nucleus-encoded genes for plastid-targeted proteins in Helicosporidium: functional diversity of a cryptic plastid in a parasitic alga

scientific article published on October 2004

Nucleus-encoded periplastid-targeted EFL in chlorarachniophytes

scientific article published on 3 July 2008

Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids

scientific article

Nucleus-to-nucleus gene transfer and protein retargeting into a remnant cytoplasm of cryptophytes and diatoms

scientific article published on 13 September 2006

On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes

scientific article

Openly available illustrations as tools to describe eukaryotic microbial diversity

scientific article published on 21 November 2023

Organelle evolution: what's in a name?

scientific article

Organelle genome complexity scales positively with organism size in volvocine green algae

scientific article

Origins of microsporidia

scientific article published on January 1998

Ostreococcus tauri: seeing through the genes to the genome

scientific article published on 28 February 2007

Overexpression of molecular chaperone genes in nucleomorph genomes

scientific article

Parallel functional reduction in the mitochondria of apicomplexan parasites

scientific article published on 12 July 2021

Parallel genome reduction in symbionts descended from closely related free-living bacteria

scientific article published on 21 July 2017

Parasites go the full monty ⬇️

scientific article published on November 22, 2001

Patrick Keeling

scientific article published on 6 February 2017

Patterns of genome evolution among the microsporidian parasites Encephalitozoon cuniculi, Antonospora locustae and Enterocytozoon bieneusi

scientific article

Patterns that define the four domains conserved in known and novel isoforms of the protein import receptor Tom20

scientific article (publication date: 18 March 2005)

Phylogenetic Place of Microsporidia in the Tree of Eukaryotes

scholarly article published 1 August 2014

Phylogenetic diversity of parabasalian symbionts from termites, including the phylogenetic position of Pseudotrypanosoma and Trichonympha.

scientific article published in November 1998

Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra

scientific article

Phylogenetic position and morphology of spirotrichosomidae (parabasalia): new evidence from Leptospironympha of Cryptocercus punctulatus

scientific article published on 6 August 2009

Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean

scholarly article published in 2023

Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction

scientific article

Phylogenomics of novel ploeotid taxa contribute to the backbone of the euglenid tree

scientific article published in 2023

Phylogenomics of the Intracellular Parasite Mikrocytos mackini Reveals Evidence for a Mitosome in Rhizaria

Phylogenomics of the intracellular parasite Mikrocytos mackini reveals evidence for a mitosome in rhizaria

scientific article published on 25 July 2013

Phylogenomics shows unique traits in Noctilucales are derived rather than ancestral

scientific article published in 2022

Phylogenomics supports the monophyly of the Cercozoa

Phylogenomics supports the monophyly of the Cercozoa

scientific article published in January 2019

Phylogeny of gregarines (Apicomplexa) as inferred from small-subunit rDNA and beta-tubulin

scientific article (publication date: 2003)

Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods

scientific article published on 11 December 2018

Plant genomes: cyanobacterial genes revealed

scientific article published on 01 January 2003

Plastid-derived Type II fatty acid biosynthetic enzymes in chromists

scientific article published on August 2003

Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina.

scientific article

Plastid-targeting peptides from the chlorarachniophyte Bigelowiella natans

scientific article published in September 2004

Polymorphic insertions and deletions in parabasalian enolase genes

scientific article published in May 2004

Predatory colponemids are the sister group to all other alveolates

scientific article published on 20 April 2020

Progress towards the Tree of Eukaryotes

scientific article published on 01 August 2019

Proposals 048–051 to amend the International Code of Botanical Nomenclature ⬇️

scientific article published in 2009

Protein targeting in parasites with cryptic mitochondria

scientific article published on 20 December 2006

Protists and the Wild, Wild West of Gene Expression: New Frontiers, Lawlessness, and Misfits

scientific article published on 17 June 2016

Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes

scientific article published in 2022

Pseudotrichonympha leei, Pseudotrichonympha lifesoni, and Pseudotrichonympha pearti, new species of parabasalian flagellates and the description of a rotating subcellular structure

scientific article

Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology

scientific article published on 15 April 2020

Publisher Correction: Parallel genome reduction in symbionts descended from closely related free-living bacteria

scientific article published on 01 April 2018

Puromycin selection for stable transfectants of the oyster-infecting parasite Perkinsus marinus

Pyruvate-phosphate dikinase of oxymonads and parabasalia and the evolution of pyrophosphate-dependent glycolysis in anaerobic eukaryotes

scientific article published in January 2006

Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin

scientific article published on 16 May 2012

Re-examining alveolate evolution using multiple protein molecular phylogenies

scientific article published in January 2002

Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids

scholarly article published in 2023

Recycled plastids: a 'green movement' in eukaryotic evolution

scientific article

Reduction and compaction in the genome of the apicomplexan parasite Cryptosporidium parvum

scientific article published on May 2004

Reference Tree and Environmental Sequence Diversity of Labyrinthulomycetes

scientific article published on 22 June 2016

Relative rates of evolution among the three genetic compartments of the red alga Porphyra differ from those of green plants and do not correlate with genome architecture

scientific article published in July 2012

Reply to Speijer: Does complexity necessarily arise from selective advantage?

scientific article published on 9 February 2010

Revealing the metabolic capacity of Streblomastix strix and its bacterial symbionts using single-cell metagenomics

scientific article published on 06 September 2019

Rhizaria

scientific article published on 01 February 2014

Rhizarian 'Novel Clade 10' Revealed as Abundant and Diverse Planktonic and Terrestrial Flagellates, including Aquavolon n. gen.

scientific article published on 15 April 2018

Role of horizontal gene transfer in the evolution of photosynthetic eukaryotes and their plastids

scientific article published on January 2009

Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO2, and CH4 fluxes in temperate rainforest soil

scientific article published on 11 December 2018

Shikimate pathway in apicomplexan parasites

scientific article

Shikimate pathway in apicomplexan parasites

scientific article published in Nature

Shrink it or lose it: balancing loss of function with shrinking genomes in the microsporidia ⬇️

scientific article published on January 1, 2011

Simplicity and complexity of microsporidian genomes

scientific article

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates

scientific article published on 10 October 2017

Single cell transcriptomics of ABEDINIUM reveals a new early-branching dinoflagellate lineage

scientific article published on 12 October 2020

Single-Cell DNA barcoding using sequences from the small subunit rRNA and internal transcribed spacer region identifies new species of Trichonympha and Trichomitopsis from the hindgut of the termite Zootermopsis angusticollis

scientific article published in 2013

Single-cell transcriptomics for microbial eukaryotes

scientific article

Single-cell transcriptomics using spliced leader PCR: Evidence for multiple losses of photosynthesis in polykrikoid dinoflagellates

scientific article

Splicing and transcription differ between spore and intracellular life stages in the parasitic microsporidia.

scientific article

Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia

scientific article

Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry

scientific article published on November 1998

Surface morphology of Saccinobaculus (Oxymonadida): implications for character evolution and function in oxymonads

scientific article published on 19 November 2007

Symbiont replacement between bacteria of different classes reveals additional layers of complexity in the evolution of symbiosis in the ciliate Euplotes.

scientific article published on 20 December 2017

Symbionts of the ciliate Euplotes: diversity, patterns and potential as models for bacteria-eukaryote endosymbioses

scientific article published on 17 July 2019

Symbiosis becoming permanent: Survival of the luckiest

scientific article published on 17 August 2015

Symbiosis, morphology, and phylogeny of Hoplonymphidae (Parabasalia) of the wood-feeding roach Cryptocercus punctulatus

scientific article published on 23 June 2011

Symbiotic innovation in the oxymonad Streblomastix strix

scientific article

Sympatric kelp species share a large portion of their surface bacterial communities

scientific article published in 2017

Taxonomy of the Apicomplexan Symbionts of Coral, including Corallicolida ord. nov., Reassignment of the Genus Gemmocystis , and Description of New Species Corallicola aquarius gen. nov. sp. nov. and Anthozoaphila gnarlus gen. nov. sp. nov

scientific article

Termite hindguts and the ecology of microbial communities in the sequencing age.

scientific article

Tertiary endosymbiosis in two dinotoms has generated little change in the mitochondrial genomes of their dinoflagellate hosts and diatom endosymbionts

scientific article published in 2012

Tetrapyrrole synthesis of photosynthetic chromerids is likely homologous to the unusual pathway of apicomplexan parasites

scientific article published on 30 September 2011

The "Other" : an Overview of the Family " Midichloriaceae"

scientific article published on 22 March 2022

The 'other' coral symbiont: Ostreobium diversity and distribution

scientific article

The 3D structure of the apical complex and association with the flagellar apparatus revealed by serial TEM tomography in Psammosa pacifica, a distant relative of the Apicomplexa

scientific article (publication date: 2014)

The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts

scientific article

The Function and Evolution of Motile DNA Replication Systems in Ciliates

scientific article published on 27 October 2020

The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape

scientific article

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

scientific article

The Morphology, Ultrastructure and Molecular Phylogeny of a New Freshwater Heterolobose Amoeba Parafumarolamoeba stagnalis n. sp. (Vahlkampfiidae; Heterolobosea)

scholarly article published in 2021

The Morphology, Ultrastructure and SSU rRNA Gene Sequence of a New Freshwater Flagellate, Neobodo borokensis n. sp. (Kinetoplastea, Excavata).

scientific article

The Number, Speed, and Impact of Plastid Endosymbioses in Eukaryotic Evolution ⬇️

scientific article published on February 28, 2013

The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer

scientific article

The RAB family GTPase Rab1A from Plasmodium falciparum defines a unique paralog shared by chromalveolates and rhizaria

scientific article published on July 2009

The complete mitochondrial genome from an unidentified Phalansterium species

article by Jean-François Pombert et al published 20 January 2013 in Protist genomics

The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured

scientific article

The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum

scientific article

The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis

scientific article

The dinoflagellates Durinskia baltica and Kryptoperidinium foliaceum retain functionally overlapping mitochondria from two evolutionarily distinct lineages

scientific article

The distribution of Elongation Factor-1 Alpha (EF-1alpha), Elongation Factor-Like (EFL), and a non-canonical genetic code in the ulvophyceae: discrete genetic characters support a consistent phylogenetic framework.

scientific article published in July 2009

The endosymbiotic origin, diversification and fate of plastids

scientific article

The eukaryome: Diversity and role of microeukaryotic organisms associated with animal hosts

scientific article published in 2019

The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins ⬇️

scientific article published on June 7, 2012

The fate of obligate endosymbionts: reduction, integration, or extinction

scientific article published on 27 August 2019

The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes

scientific article

The impact of history on our perception of evolutionary events: endosymbiosis and the origin of eukaryotic complexity

scientific article published on February 2014

The inadequacy of morphology for species and genus delineation in microbial eukaryotes: an example from the parabasalian termite symbiont coronympha

scientific article

The microbiome of a bacterivorous marine choanoflagellate contains a resource-demanding obligate bacterial associate

scientific article published on 15 August 2022

The mitochondrial genome of the entomoparasitic green alga helicosporidium

scientific article

The molecular phylogeny of Chionaster nivalis reveals a novel order of psychrophilic and globally distributed Tremellomycetes (Fungi, Basidiomycota)

scientific article published on 24 March 2021

The origins of malaria: there are more things in heaven and earth …

scientific article

The others: our biased perspective of eukaryotic genomes

scientific article

The phylogenetic position of Kofoidia loriculata (Parabasalia) and its implications for the evolution of the Cristamonadea

scientific article

The phylogenetic position of alpha- and beta-tubulins from the Chlorarachnion host and Cercomonas (Cercozoa).

scientific article

The phylogenetic position of the oxymonad Saccinobaculus based on SSU rRNA.

scientific article published on 12 July 2006

The phylogeny of colpodellids (Alveolata) using small subunit rRNA gene sequences suggests they are the free-living sister group to apicomplexans

scientific article

The reduced genome of the parasitic microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism

scientific article

The role of host phylogeny varies in shaping microbial diversity in the hindguts of lower termites

scientific article

The search for the missing link: a relic plastid in Perkinsus?

scientific article published on 22 August 2011

The secondary endosymbiont of the cryptomonad Guillardia theta contains alpha-, beta-, and gamma-tubulin genes

scientific article published in September 1999

The selfish pursuit of sex

scientific article published in Nature

Three-Dimensional Molecular Cartography of the Caribbean Reef-Building Coral Orbicella faveolata

scientific article published on 01 April 2021

Tracing the evolution of the light-harvesting antennae in chlorophyll a/b-containing organisms

scientific article published on 16 February 2007

Transfer of Nosema locustae (Microsporidia) to Antonospora locustae n. comb. based on molecular and ultrastructural data.

scientific article

Transformation of Diplonema papillatum, the type species of the highly diverse and abundant marine micro-eukaryotes Diplonemida (Euglenozoa).

scientific article published on 10 January 2018

Trichonympha burlesquei n. sp. from Reticulitermes virginicus and evidence against a cosmopolitan distribution of Trichonympha agilis in many termite hosts

scientific article

Twenty‐Fold Difference in Evolutionary Rates between the Mitochondrial and Plastid Genomes of Species with Secondary Red Plastids ⬇️

scientific article published on January 11, 2012

Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists

scientific article published on 25 November 2019

Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

scientific article

Validation of a universal set of primers to study animal-associated microeukaryotic communities

scientific article published on 25 July 2019

Viral proteins as a potential driver of histone depletion in dinoflagellates.

scientific article

What Can Environmental Sequences Tell Us About the Distribution of Low-Rank Taxa? The Case of Euplotes (Ciliophora, Spirotrichea), Including a Description of Euplotes enigma sp. nov

scientific article published on 13 August 2018

Who is Oxyrrhis marina? Morphological and phylogenetic studies on an unusual dinoflagellate

scholarly article by C. D. Lowe et al published 25 August 2010 in Journal of Plankton Research

Widespread and ancient distribution of a noncanonical genetic code in diplomonads

scientific article published in September 1997

Widespread recycling of processed cDNAs in dinoflagellates

scientific article published on 01 July 2008

X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates

scientific article

mRNA processing in Antonospora locustae spores

scientific article published on 26 September 2008

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